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LotjaGi3g1v0196000.1

Overview

Field Value
Gene ID LotjaGi3g1v0196000
Transcript ID LotjaGi3g1v0196000.1
Lotus japonicus genome version Gifu v1.2
Description Leucine-rich repeat receptor-like protein kinase family protein; TAIR: AT1G45616.1 receptor like protein 6; Swiss-Prot: sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12; TrEMBL-Plants: tr|A0A072UHN3|A0A072UHN3_MEDTR Verticillium wilt resistance-like protein; Found in the gene: LotjaGi3g1v0196000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:28565416..28570043) extracted from Lotus japonicus Gifu genome v1.2.

GGGTCATTGTCTTAAAAAATCTTAAAAGAGTCCCGTGTCAGAAGCAAAGCAATCGAAAAAGTCAACACACAATTAGATGG ACCGACATAGAAACGCGTAGATTCCAATAAAAATAATCTTAGTCTTCAACTAATGTTAGCCATATTGTTCTTTCTTTTCT GGCAAATCGCACACTGCAAAAATCAAAGTTATGACTTAAGACACAGTTTACTTTGAATGGTACACCACCTCTGAGTTGGT TTCTTGACCAATCCCATTTTATTATTCTCTTGCTTGCCTCCTCTTCCACTCTACTCTTCAACAAAACTTTTTACTTTTTG CCACTTTTTCTAAGCAAATTTCGGTGAGTTTAGGAAGAAAAACACTGGAAACACACAGGGTTGAAGGGTCTTGTTGATGG GTCTGCAACTTCATGAGACCAACATTTGTTCACTCAATTCTTCAGTTTTGTGTTGTTTTGCTGTCACTCAGAGTAGACAC CAATGAGAATTACATTGTTTTCATTGCTTTCCTTCATTCTCTGTCTCTGGATATATCTCAGCATCCACATCTCTGTTGCT TCTGCCAAATGTCTTCAAGATCAGCAATCATTGCTCCTTCAATTAAAAAACAGTCTCAAATTGAGCCCTGATAGTTCTAG CAAATTAAAGCTGTGGAATCAAAGCATTTCTTGCTGTGATTGGAGTGGTGTGAGCTGTGACAATGGTGGAAATGTTATTG GCCTTGACCTGAGTGGAGAATCAATCATTGGTGGATTTGACAATTCAAGTATCCTTTTCAGTTTCCAACATCTCCAGAAA CTGAACTTGGCTGTTAACAATTTCAATTCTGCCATTCCTTCTGGATTCAACAAGTTGGACAAGTTAACTTATCTGAATAT GTCATATGCTGGCTTTGTGGGGCAGATTCCCATAGAGATTTCTCTCCTGACAAGGTTGGTTACTCTTGACATCTCTTCTC TTAGCTATTTAACAGGCCAAGAGATGAAACTTGAGAACCCAAATCTACAAAAGCTGGTCCAAAGTCTCACTAGTCTTAGG AAATTGTATCTGGATGGTGTAAGTATAACAGCTGAGGGACAGGATTGGTGCAATGCTTTGCAGCCGTTGCGCAACCTGCG AGAACTGAGCATGCCCTTCTGCTGTCTCTCAGGACCCATTGATTCCACCCTGACAAGACTTGAGAATCTATCAGTCATTA TTCTTGATGGGAACAATTTTTCATCACCAGTGCCAGAAACATTTGCCAATTTCAAAAATCTGACCACCCTCAGTCTCGCG TCTTGCAAGTTGACTGGAAGGTTTCCTGAGAAGATCTTCCAGATTGGAACATTGTCAGTTATTGACATATCATCCAACAG CAATCTCCATGGTTTGTTTCCAGACTTCCCAATAAATGGATCTCTGCAGACCTTAAGAGTAAGTAACACAAGCTTCTCTG GAGAATTTCCACCCTCTATTGCTAACATGAGGCACTTATCTGAATTGGATCTATCCTATTGTCAATTTAATGGAACACTT CCCAATACAATGTCAAACCTCACAGAACTCAAGTACCTGGATTTGTCATTTAACAGCTTCACCGGTGCATTGCCATCATT TGCTCTGGCCAAAAAACTTGCCCACATAGACCTTTCTCATAATGGTTTAAGTGGGGAAATTCCATCATCTTCTCACTTTG AAGGATTGAACGAACTTGTCAGCATTGACTTGCGTTATAATTCTATCAATGGTAGCATTCCTTCAACACTTTTTACACTG CCATCCCTTCGGAAGATTCAGCTTTCCTTCAACCAGTTTAGTCAACTAGATGAATTCAGGAATGCATCTCCCTCTAAATT AAACACCCTTGATTTAAGTAGCAATGATCTATCAGGGCCTTTTCCGGCATCTATCTACCAGCTCGCTACACTCTCTATCC TCAAACTTGCCTCCAACAAGTTCAATGGGACAATGCAGCTAAATAAGCTTTTGGAGCTCAGAAATTTAACTGCACTAGAC CTTTCACAAAACAACTTATCAGTCAATGTGAACGTTACAAATGTTGAGCTGCCTTCATTTCCCAACATTAGCAATCTCAA TTTGGCATCCTGTAATTTGACAACGTTCCCTGGTTTCTTGAGAAACCAATCCAGATTAAATGTTCTGGACCTTTCAGATA ACCAGATTCAAGGAAAAGTGCCCAACTGGATTTGGAAACTGCAAAGTCTTCAAAGCCTTAATATTTCTCACAATTTGCTG ACTGACTTTGAAGGGCCTTTGCAGAATCTTACTTCCAACTTGATAGTCCTTGACCTTCATGACAATCAACTTCAGGGGAC AGTACCTGTTTTTCCTCAATATGCCGTCTATTTGGATTATTCAAGCAACAAATTCAGGTCTGCTATCCCACAAGATATCG GTAATTACCAGTCGTTTACTATTTTTCTTTCTCTTTCAAACAATAGCTTTCATGGAAGCATCCCAGATTCCCTCTGTAGT GCCTCAAGTCTTCAAGTGCTTGATCTTTCCATTAATAATATTTCTGGAGCAATTCCCTCATGCTTAATGGCAATGACCGA GACCCTTGGGGTATTAAATCTGAGAATGAACAATCTCACAGGTCCCATCCCAGATACTTTTCCAGCTTCCTGTGCTCTAA GGACTCTGGATCTCCAGAAAAATAAATTAGATGGTCAGATTCCAAAATCTCTTGCTAATTGCTCAGCACTAGAAGTCTTA GACCTTGGGAAAAACCGTATTGTTGATGGCTTTCCATGCATGTTGAAGAACATATCCACACTCCGAGTCTTGGTCTTGAG TAAAAACAAATTCCATGGTCCCATTGGATGTCCCCAGAATAATGGTACTTGGAAAAGGCTTCAGATAGTTGATCTAGCCT TTAACAACTTCAGCGGAAAACTACCAGGAAAATGCTTCACAAGGTGGGAGGCAATGATGTCTGGTGAAAACCAAGCTGAT TCTAAGGTAAATCACATCCGATTTCAGGTTCTTCAATATGATCAAATATACTATCAGGATTCAGTGACAGTTACAAGCAA AGGTCAGGGGATGGAGCTGGTTAAGATTCTAACTGTCTTCACTTCCATTGATTTCTCATCCAATCACTTCCAAGGGGAAA TACCAAAAGAGCTATTTGACTTTAAAGAACTCTATGTGCTTAATTTATCAAACAATGCTCTTTCTGGCCAAATTCAATCA TCTATAGGAAATCTGAAGCAGCTTGAGTCCCTGGACCTGTCAAATAACTCACTGGAAGGAGAAATTCCCACAGAGATTGC AAGGCTATCTTTCCTATCATTCCTGAACCTCACATTTAATCAACTGTCCGGAAAAATCCCTACAGGCACCCAAATTCAAT CATTTTCAGAAGCTTCCTTCATTGGCAATAAAGGATTATGTGGCCCTCCTTTGACTGCAAGCTGCAGTGCTAATCCAAGT CCACCAATGACAGAAGAATCAGACACAGAATTTGATTGGGACTGTATACCCACCGGAATTGGCTTTGGGGTTGGAGCTGG ACTAGTTTTTGCCCCATTGATGATGTGGGACAGAGGAAGAAAATGGAGCAATGATATCACAGACAAAATTCTTATGGCAA TTCTTCCATTGTTCGGGTTAGCTTATACCCCAATTGATGATGATGATGATGATGATGATGAAGGGGACAACGAGCAAGAC TCAAATATGACAGAGGACAGTGATTATGATGAGGAGGAAGAAGATTATCCAAGGTTCAGAGGGAGGTACTGTATCTTTTG TTCCAAGTTTGACATCACTATGAAGAAGGTCATTCATGACCCAAGCTGCACGTGCTGTCAACCATCACCAGCTTCAAATT CTACTCATTCATCAGATTCAGATTCCTCTTAGTCCTCCCATAAAAGATGAAAATGTGATAATCTGCTTCTGCTTCTTTTC TTTTTTCTTGTCTTTATTCTTTCTTCTGAATGCCTACATGTGTATATGTTGTACATAAACACACAAATTCATCCCAATGG TGGCAACCAACAATGATAAAACAATAAGCAATGGTGTCCATTTTGATTTTTCAGAAGGTTTTGTAGTAATCAATGATAAG AAAAAAAAAAAACTCAAGGAATAAAGCCAATGCTCATTCAGGATTTTCATCAAACACTTGGAGTGCTTACCTATCCAATG ACTGCTTAAACGTTTGTGTTTTAGTTGGGAGAACCATGCTCATCCATCAATAATAGCACTTTGTAGAGTAGCTAAGAACT AGGAAAGTGCAAATCGCTGTTTAGTTGAAACAAAACGCACAGGCTTAGATTTCAACAAGGAGTATGGACTCTTGGCAGTT GAATAGTAATTTGTTCCTTGGCAAAAATACAATTTCTTTTATCTAGAGGAACTAGAGGTATATTTTTCAGATTAAAGCTT GCACTTGAAACTACTTTGATCTCCTAATTGTATCATGTGAGGGAAATCAAAATCAGGAGATGCTTAAGGTCACTGTACTA TGCAGGGCTTGAGGTCATTGGAGATGTTCTTATAATGCAATTAAGCATCCAATAAAACGTTTGGGCTTTGTGATTAGAGC CAGAGGCACTGTTTGCACAAAATATTTTCTTCACCTACACCACATAATAGTTGTAAGATGTTTTCTTT 

CDS sequence (LotjaGi3g1v0196000.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAGAATTACATTGTTTTCATTGCTTTCCTTCATTCTCTGTCTCTGGATATATCTCAGCATCCACATCTCTGTTGCTTC TGCCAAATGTCTTCAAGATCAGCAATCATTGCTCCTTCAATTAAAAAACAGTCTCAAATTGAGCCCTGATAGTTCTAGCA AATTAAAGCTGTGGAATCAAAGCATTTCTTGCTGTGATTGGAGTGGTGTGAGCTGTGACAATGGTGGAAATGTTATTGGC CTTGACCTGAGTGGAGAATCAATCATTGGTGGATTTGACAATTCAAGTATCCTTTTCAGTTTCCAACATCTCCAGAAACT GAACTTGGCTGTTAACAATTTCAATTCTGCCATTCCTTCTGGATTCAACAAGTTGGACAAGTTAACTTATCTGAATATGT CATATGCTGGCTTTGTGGGGCAGATTCCCATAGAGATTTCTCTCCTGACAAGGTTGGTTACTCTTGACATCTCTTCTCTT AGCTATTTAACAGGCCAAGAGATGAAACTTGAGAACCCAAATCTACAAAAGCTGGTCCAAAGTCTCACTAGTCTTAGGAA ATTGTATCTGGATGGTGTAAGTATAACAGCTGAGGGACAGGATTGGTGCAATGCTTTGCAGCCGTTGCGCAACCTGCGAG AACTGAGCATGCCCTTCTGCTGTCTCTCAGGACCCATTGATTCCACCCTGACAAGACTTGAGAATCTATCAGTCATTATT CTTGATGGGAACAATTTTTCATCACCAGTGCCAGAAACATTTGCCAATTTCAAAAATCTGACCACCCTCAGTCTCGCGTC TTGCAAGTTGACTGGAAGGTTTCCTGAGAAGATCTTCCAGATTGGAACATTGTCAGTTATTGACATATCATCCAACAGCA ATCTCCATGGTTTGTTTCCAGACTTCCCAATAAATGGATCTCTGCAGACCTTAAGAGTAAGTAACACAAGCTTCTCTGGA GAATTTCCACCCTCTATTGCTAACATGAGGCACTTATCTGAATTGGATCTATCCTATTGTCAATTTAATGGAACACTTCC CAATACAATGTCAAACCTCACAGAACTCAAGTACCTGGATTTGTCATTTAACAGCTTCACCGGTGCATTGCCATCATTTG CTCTGGCCAAAAAACTTGCCCACATAGACCTTTCTCATAATGGTTTAAGTGGGGAAATTCCATCATCTTCTCACTTTGAA GGATTGAACGAACTTGTCAGCATTGACTTGCGTTATAATTCTATCAATGGTAGCATTCCTTCAACACTTTTTACACTGCC ATCCCTTCGGAAGATTCAGCTTTCCTTCAACCAGTTTAGTCAACTAGATGAATTCAGGAATGCATCTCCCTCTAAATTAA ACACCCTTGATTTAAGTAGCAATGATCTATCAGGGCCTTTTCCGGCATCTATCTACCAGCTCGCTACACTCTCTATCCTC AAACTTGCCTCCAACAAGTTCAATGGGACAATGCAGCTAAATAAGCTTTTGGAGCTCAGAAATTTAACTGCACTAGACCT TTCACAAAACAACTTATCAGTCAATGTGAACGTTACAAATGTTGAGCTGCCTTCATTTCCCAACATTAGCAATCTCAATT TGGCATCCTGTAATTTGACAACGTTCCCTGGTTTCTTGAGAAACCAATCCAGATTAAATGTTCTGGACCTTTCAGATAAC CAGATTCAAGGAAAAGTGCCCAACTGGATTTGGAAACTGCAAAGTCTTCAAAGCCTTAATATTTCTCACAATTTGCTGAC TGACTTTGAAGGGCCTTTGCAGAATCTTACTTCCAACTTGATAGTCCTTGACCTTCATGACAATCAACTTCAGGGGACAG TACCTGTTTTTCCTCAATATGCCGTCTATTTGGATTATTCAAGCAACAAATTCAGGTCTGCTATCCCACAAGATATCGGT AATTACCAGTCGTTTACTATTTTTCTTTCTCTTTCAAACAATAGCTTTCATGGAAGCATCCCAGATTCCCTCTGTAGTGC CTCAAGTCTTCAAGTGCTTGATCTTTCCATTAATAATATTTCTGGAGCAATTCCCTCATGCTTAATGGCAATGACCGAGA CCCTTGGGGTATTAAATCTGAGAATGAACAATCTCACAGGTCCCATCCCAGATACTTTTCCAGCTTCCTGTGCTCTAAGG ACTCTGGATCTCCAGAAAAATAAATTAGATGGTCAGATTCCAAAATCTCTTGCTAATTGCTCAGCACTAGAAGTCTTAGA CCTTGGGAAAAACCGTATTGTTGATGGCTTTCCATGCATGTTGAAGAACATATCCACACTCCGAGTCTTGGTCTTGAGTA AAAACAAATTCCATGGTCCCATTGGATGTCCCCAGAATAATGGTACTTGGAAAAGGCTTCAGATAGTTGATCTAGCCTTT AACAACTTCAGCGGAAAACTACCAGGAAAATGCTTCACAAGGTGGGAGGCAATGATGTCTGGTGAAAACCAAGCTGATTC TAAGGTAAATCACATCCGATTTCAGGTTCTTCAATATGATCAAATATACTATCAGGATTCAGTGACAGTTACAAGCAAAG GTCAGGGGATGGAGCTGGTTAAGATTCTAACTGTCTTCACTTCCATTGATTTCTCATCCAATCACTTCCAAGGGGAAATA CCAAAAGAGCTATTTGACTTTAAAGAACTCTATGTGCTTAATTTATCAAACAATGCTCTTTCTGGCCAAATTCAATCATC TATAGGAAATCTGAAGCAGCTTGAGTCCCTGGACCTGTCAAATAACTCACTGGAAGGAGAAATTCCCACAGAGATTGCAA GGCTATCTTTCCTATCATTCCTGAACCTCACATTTAATCAACTGTCCGGAAAAATCCCTACAGGCACCCAAATTCAATCA TTTTCAGAAGCTTCCTTCATTGGCAATAAAGGATTATGTGGCCCTCCTTTGACTGCAAGCTGCAGTGCTAATCCAAGTCC ACCAATGACAGAAGAATCAGACACAGAATTTGATTGGGACTGTATACCCACCGGAATTGGCTTTGGGGTTGGAGCTGGAC TAGTTTTTGCCCCATTGATGATGTGGGACAGAGGAAGAAAATGGAGCAATGATATCACAGACAAAATTCTTATGGCAATT CTTCCATTGTTCGGGTTAGCTTATACCCCAATTGATGATGATGATGATGATGATGATGAAGGGGACAACGAGCAAGACTC AAATATGACAGAGGACAGTGATTATGATGAGGAGGAAGAAGATTATCCAAGGTTCAGAGGGAGGTACTGTATCTTTTGTT CCAAGTTTGACATCACTATGAAGAAGGTCATTCATGACCCAAGCTGCACGTGCTGTCAACCATCACCAGCTTCAAATTCT ACTCATTCATCAGATTCAGATTCCTCTTAG 

Protein sequence (LotjaGi3g1v0196000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MRITLFSLLSFILCLWIYLSIHISVASAKCLQDQQSLLLQLKNSLKLSPDSSSKLKLWNQSISCCDWSGVSCDNGGNVIG LDLSGESIIGGFDNSSILFSFQHLQKLNLAVNNFNSAIPSGFNKLDKLTYLNMSYAGFVGQIPIEISLLTRLVTLDISSL SYLTGQEMKLENPNLQKLVQSLTSLRKLYLDGVSITAEGQDWCNALQPLRNLRELSMPFCCLSGPIDSTLTRLENLSVII LDGNNFSSPVPETFANFKNLTTLSLASCKLTGRFPEKIFQIGTLSVIDISSNSNLHGLFPDFPINGSLQTLRVSNTSFSG EFPPSIANMRHLSELDLSYCQFNGTLPNTMSNLTELKYLDLSFNSFTGALPSFALAKKLAHIDLSHNGLSGEIPSSSHFE GLNELVSIDLRYNSINGSIPSTLFTLPSLRKIQLSFNQFSQLDEFRNASPSKLNTLDLSSNDLSGPFPASIYQLATLSIL KLASNKFNGTMQLNKLLELRNLTALDLSQNNLSVNVNVTNVELPSFPNISNLNLASCNLTTFPGFLRNQSRLNVLDLSDN QIQGKVPNWIWKLQSLQSLNISHNLLTDFEGPLQNLTSNLIVLDLHDNQLQGTVPVFPQYAVYLDYSSNKFRSAIPQDIG NYQSFTIFLSLSNNSFHGSIPDSLCSASSLQVLDLSINNISGAIPSCLMAMTETLGVLNLRMNNLTGPIPDTFPASCALR TLDLQKNKLDGQIPKSLANCSALEVLDLGKNRIVDGFPCMLKNISTLRVLVLSKNKFHGPIGCPQNNGTWKRLQIVDLAF NNFSGKLPGKCFTRWEAMMSGENQADSKVNHIRFQVLQYDQIYYQDSVTVTSKGQGMELVKILTVFTSIDFSSNHFQGEI PKELFDFKELYVLNLSNNALSGQIQSSIGNLKQLESLDLSNNSLEGEIPTEIARLSFLSFLNLTFNQLSGKIPTGTQIQS FSEASFIGNKGLCGPPLTASCSANPSPPMTEESDTEFDWDCIPTGIGFGVGAGLVFAPLMMWDRGRKWSNDITDKILMAI LPLFGLAYTPIDDDDDDDDEGDNEQDSNMTEDSDYDEEEEDYPRFRGRYCIFCSKFDITMKKVIHDPSCTCCQPSPASNS THSSDSDSS 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SignalP_EUK 1 28 28 -
Phobius 1 4 4 -
SignalP_GRAM_POSITIVE 1 28 28 -
Phobius 1 28 28 -
Phobius 5 16 12 -
TMHMM 5 27 23 -
PANTHER 15 283 269 0.0
PANTHER 15 283 269 0.0
Phobius 17 28 12 -
SUPERFAMILY 29 301 273 4.42E-37
Phobius 29 1001 973 -
Gene3D 29 205 177 8.1E-34
Pfam 32 73 42 1.1E-8
SMART 101 124 24 170.0
ProSiteProfiles 103 125 23 5.109
Gene3D 206 303 98 2.2E-18
SMART 233 256 24 34.0
ProSiteProfiles 235 256 22 4.709
SUPERFAMILY 279 612 334 7.82E-56
PANTHER 286 372 87 0.0
PANTHER 286 372 87 0.0
Gene3D 304 400 97 6.4E-28
SMART 353 377 25 22.0
ProSiteProfiles 355 377 23 5.656
SMART 376 404 29 29.0
ProSiteProfiles 378 400 23 6.38
Gene3D 401 522 122 5.3E-21
ProSiteProfiles 404 427 24 5.171
PANTHER 424 1038 615 0.0
PANTHER 424 1038 615 0.0
SMART 426 447 22 14.0
ProSiteProfiles 428 449 22 6.133
Pfam 450 465 16 0.92
ProSiteProfiles 452 474 23 5.448
PRINTS 453 466 14 2.2E-5
ProSiteProfiles 476 497 22 4.932
SMART 499 532 34 390.0
SMART 499 520 22 86.0
ProSiteProfiles 501 522 22 6.357
Gene3D 524 984 461 2.0E-125
Pfam 527 586 60 6.8E-9
ProSiteProfiles 528 549 22 5.279
ProSiteProfiles 551 573 23 6.072
SMART 573 595 23 360.0
SMART 573 599 27 150.0
ProSiteProfiles 575 597 23 7.727
ProSiteProfiles 599 620 22 5.633
SUPERFAMILY 622 967 346 8.33E-51
ProSiteProfiles 669 690 22 5.91
ProSiteProfiles 694 716 23 4.578
ProSiteProfiles 718 741 24 5.61
Pfam 719 777 59 1.0E-6
SMART 740 759 20 180.0
ProSiteProfiles 742 761 20 4.893
ProSiteProfiles 889 911 23 5.533
Pfam 889 948 60 1.1E-7
SMART 911 935 25 12.0
PRINTS 911 924 14 2.2E-5
SMART 911 937 27 170.0
ProSiteProfiles 913 935 23 6.695
ProSiteProfiles 937 959 23 4.932
Phobius 1002 1022 21 -
Phobius 1023 1129 107 -
MobiDBLite 1051 1079 29 -
MobiDBLite 1051 1080 30 -

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0196000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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