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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0199400 |
| Transcript ID | LotjaGi3g1v0199400.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Disease resistance protein (TIR-NBS-LRR class); TAIR: AT5G17680.2 disease resistance protein (TIR-NBS-LRR class); Swiss-Prot: sp|Q9FI14|TAO1_ARATH Disease resistance protein TAO1; TrEMBL-Plants: tr|G7JKN5|G7JKN5_MEDTR Disease resistance protein (TIR-NBS-LRR class); Found in the gene: LotjaGi3g1v0199400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:29092469..29097125) extracted from Lotus japonicus Gifu genome v1.2.
AAAATTTAATAGGAAAATCTAAAGAAAAGGGGTTCCCCTGTAGAAAAATCTGAAAGAAATAACATAAATTCTGGTAGTGA GTTGTTTTAATCGGCCATAGTGAACACTATTCAATTATTTTACCAAGCTAAAAGGATGGACAAATTATTATTCGTTAATT CATTATTTCTTTCTCATTATAAAATAAAATTGCATTATTAAGGAGAACATTTCAAACAAACAAAATATTTTCATTGGCCC TGGAATGCTGGTACCAAACCCAAAGTAGAATTCGTCAAAATTCAATGCCAAGTGGGAGAGTGTGAATGTGAGACTTCTAA CTTAAAGATAAGGTTGACCCAAGGTCAACTGAAATTGCTTCTTCCTTCTCTATTAAGTTGCAGATCCATGATGAATTGAT GATACTCCAACTCCAACATATATGACCAGAAGTAGAATTTGAATCCCAACGGCCATAGCATAAGGTAAGATATTAAAGGT TAGTTGTTGGTTTACATTTATCTCAATCAATATTTTTGGCTAAAGATCCACTAATCGGATCATCTTGCTTGCTGGTTTGT TTATCAAAACTAAATATGATAATATCCTCTTCCCTTCATTGCTTTTGACTAACACTTTATTTGACTTTTCCACTTTCTTT CCAGTTGTTACTTACCAACCATCGACCTCATATTCATGATCTAAAAAGAACTTGTTCCAATCCAACGACACACTCTATCT CTGAATTCAAAAATTGAATATGGTGTATTTCTTTGTCTTATGGTCATTTCTGTTAGTGTTGTTTTCCTTTGTCAGTCAGT TCCTTCTAAAAGGGAGGGGTATAGCAGCAGAGCCTGTATCAGACAATGCTCCTCAAACAAACAAGCATGATGTTTTAGAC CCACCTCAAGAAGAGAAGTATGATGTTTTTGTTAGCTTCCGGGGCGAGGACATCCGTGACGGTTTTCTTAGCCATCTGGC TGATGCTTTTCGTCAAAAGAAAATAAACGCCTTCATGGATGATAAGCTTAAGAGAGGACAAGAAATATGGCCATCACTTG TTGGAGCAATTGAAGGATCATTGGTTTCAGTGATCATATTCTCTGAAAACTACGCTACTTCACGCTGGTGTTTGAATGAA TTGGTGAAAATACTTGAGTGCAGAGACAAATATGTACACACTGTAATACCAGTTTTCTACTGCGTAGATCCCACAGATGT ACGACATCAAACAGGGAGTTATAAAGCAGCATTTGCTGAGCATACAAAAGAAATCGATCCGACCATGGTGCAAACATGGA GAGATGCTTTGAATAAATCTGCTAATTTATCAGGAAATATTTCATCAGATTTTCGGTAAGCTTTTACTATTTCTTTCCAA TAAATATTTAATACTTTCTTGCTTTTTCTGACAAAATTGCAAAAGACATCTTTTTTTTCCTCTGTAACTACTTCTACTGA AATGTGCGGCTACCTTTTTAGTTACTTCTTCCACACTTATTGGACAAGTTCAAGCTAGGACCTTGTTTGTTCATTGAATT TAGTAGTTAAATTAGACTCCAGGAATACAATTAATTTTATTCCAACTGGCAAATAGAAATGGTACTTTTTCCTTACAGAT TTCTAGATAAGAACCCTTTATTTCGTTGGGACTTGACCCTCATAATGAATTTCCATTAAAAAGAAAGGAAAAACGAAAGG AATTGTTACAACATGGGTGTCTAACACCCCAGTAAAATACAACTTCCAACCAAGTGAGCTAATAATTACACCATTGATTT TCACTCATAGTCTGTCTCTTCTATAGGAATGATGCTGAGCTGCTTGGAAAGATCATCAATGATGTGTTGCATCAAGTAAG GAGGTTGAGTAAGCCCACACTTAACTCAAAAGGATTTGTTGGAATTGGCAAATCAATTGCTGATATAGAAGTCTTGCTGC TGAAACAGTCAAAAGATGTCTGCATTATTGGAATTTGGGGTATGGGAGGTATCGGCAAGACAACTATTGCAGAACAAGTG TTCAATAAAATATGTTTTGAGTATGAAGGTACCTGTTTTTTGTCAAATGTAAGAGAAGAGTTAGAAAGACATGGAACAAT TTATTTGAAAGAAAAACTTTTCTCCACACTACTAGGAGAAGATGTGAAAATAACGTCACCAAGTGGATTGTCTTATTATA TTTGGAGAAGGATTAGTCGTATGAAGGTTCTCATTGTTCTTGATGATGTGAATGATTCAGATCAGCTGGAATTATTTGGA ACTGTTGATAATTTTGGATCAGGTAGTAGAATAATTGTAACAACTCGAGATAAGCAATTGCTTATAGCTAAAGAAGTTGA TGATATACACGAGGTTGGGGTATTGAGTTCTGGTGAAGCACTTGAGCTTTTCAATTTGATTGCCTTGAACCAAAGTCACC TTGAAATGGAGTATCATGAAACTTCAAAGAGGATTGTTGATTATGCCAAAGGCATTCCATTAGTTCTTAAAGTTTTGGGT CATCTTCTTCGTGGAAAAGATCAGAAAGTATGGGAAAGCCACCTAGATAAGCTTAAGGAAATGCCGAGTAAAAAAGTTTA TGATGTGATGAAATTGAGTTATGATGATCTAGATCGCAAAGAGAAAACGGTTTTTCGGGATATTTCTTGTTTCTTCAATG GAATGAATATGAAAGTGGACTCCATAAAAGCTTTATTGAAAGATCGTGAAAGTGATAATTCAGTGGCTCATGCGTTAGAA AGGCTGAAAGATAAAGCTCTTATAATTGTCTCCAAGGATAATGTTGTATCTGTGCATGATATTATCAAAGAAATGGCTTG GGAGATTGTTCGCCAAGAATCTGATGGAAACATTGGAAACCAAAGTCGATTTGGGGACGTTGATGAAGTATTGGAAAATG ACAAGGTAATAGCCTAAATTATAATAACGTCTGTTAGATAAACAGTTGATATGTGGCTTTTAATGGTGTTTAATTTTTTT CTTTCCTACATTGATTACAGGGGACGGATGCCATTAGAATTATGCGGATGAACTTGTCAAAAATTAAGAGCAGCAACCTG AAGTTTAGCTCCAACATGTTTTCTAGGATGAGAAAACTTCAATTTCTTGATTTTTACGGGGAACGTGAAGACTACCCTGA TATTCTTCCTGAGGGACTTCAATCTTTACCCAATAAATTAAGATATCTTCGTTGGATGAATTACCCTCTGAAATCCTTGC CAGAAAAATTTTCTGCAGAAAAACTTGTTATGTTGGACATGACTTATAGCAATGTGGAGATACTTTGGGATGGAGTGCAG GTAATTCAAACATTGTGGGCATGTGTTGTGTCTTCATTTTGTGCTCTTAATTGAAGGAATACAAAACTAACATTAGCTCA TGTGCTAGCTATGTCTTCATTTTGTTTTATTTTATTACAGAATCTGGTGAATTTAAAACAAGTTAAACTCCGTTGTTGTG TATTCCTGAAGGAGCTGCCCGACTTTTCAAAGGCCACAAATCTTGAAGTGTTAATTGCCAGTTTTTGTTATGACTTGACT TGTGTGCATCCATTTATTTTCTCTCTGGGAAAGCTTGAGAAATTGGATCTTAGTCACTGCTCTTCCCTCACCAGCCTTAC AAGTAATGCTCAACCAAGCTGCCTCAGTTATCTCAACCTAGAAGGGTGTAAAGATCTAACAGAGTTCTCAGTGACATCAG AGAATATGATAGAACTTAATCTGAGCGACACCGGAATCAAAGCATTGCCTTCATCATTTGGAAGTCAAAGAAAGCTTGAA ATCCTTGATTTAGAACAAGGTAGAATTGAGAGCTTACCATCATGCATTGTGAATCTCACAAGACTACGATATCTAAACCT AAGTGATTGTGAGAAGCTTCAAACATTGCCAGAACTTCCCCCCTCCGTTGAAACTCTACTTACCCGTGGCTGCAGCTCTT TGAAGACAGTGTTGTTCCCTTCAACAGCTACTGAACAATCCCAGGAGAACAAGAAAAGGGTTGAGTTCTTTCAATGTGAG AGCTTGGATGAACGTTCTCTTTGGAAAAAATAACTTGTTGGGGAGATGCTGCAACACTTAACAAAAGGATGTTGATGACG GAAGCGATTCAAAGCGTGTCTACACACTAACTTTTAGGTTCAATTCGCCCCCACCAATTAATGTATATTGGATGCAATTG AGAAGAACGACGAATTTCCTTCAGGATACTTTGAAAACCTGGATGTGATTTGCACTAACACAACAAACATATCTTTAATA ATAGTTTACATAGAGATGATTCCCAAAATTCACTCATGCATTAGTGCAGTGAAAGATGATTTAGAATAATATAAATGGAA GAAAAATTGGTTGAATTATGTCTAATTTCGTGTCTGATTTTGCTGCTCAAGTTTCTCTATTTATAAAGAGATTAACTTCA TCCGGTGAAAATCTCTTGGTGAAGAGAACTCCTTCTTGCCTTTGTGAGCAATTTAGGATTCCTTACGGGGTGTCTGTAGA ACACTTGATCAACATCACTTTCATGTCGCACTAGGATTTCTTTGGGGGTTCTCCATAACTTTTCATTTTTGTTTTTCGCC ATTTTGATCCCATTTTCGCAAGAAGGTTGGGACACTTATTGGCCTCAGAATATGTGAATTCTAGAATTAACCCCATTCAT AAAATTCGACATGACTA
CDS sequence (LotjaGi3g1v0199400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGTATTTCTTTGTCTTATGGTCATTTCTGTTAGTGTTGTTTTCCTTTGTCAGTCAGTTCCTTCTAAAAGGGAGGGG TATAGCAGCAGAGCCTGTATCAGACAATGCTCCTCAAACAAACAAGCATGATGTTTTAGACCCACCTCAAGAAGAGAAGT ATGATGTTTTTGTTAGCTTCCGGGGCGAGGACATCCGTGACGGTTTTCTTAGCCATCTGGCTGATGCTTTTCGTCAAAAG AAAATAAACGCCTTCATGGATGATAAGCTTAAGAGAGGACAAGAAATATGGCCATCACTTGTTGGAGCAATTGAAGGATC ATTGGTTTCAGTGATCATATTCTCTGAAAACTACGCTACTTCACGCTGGTGTTTGAATGAATTGGTGAAAATACTTGAGT GCAGAGACAAATATGTACACACTGTAATACCAGTTTTCTACTGCGTAGATCCCACAGATGTACGACATCAAACAGGGAGT TATAAAGCAGCATTTGCTGAGCATACAAAAGAAATCGATCCGACCATGGTGCAAACATGGAGAGATGCTTTGAATAAATC TGCTAATTTATCAGGAAATATTTCATCAGATTTTCGGAATGATGCTGAGCTGCTTGGAAAGATCATCAATGATGTGTTGC ATCAAGTAAGGAGGTTGAGTAAGCCCACACTTAACTCAAAAGGATTTGTTGGAATTGGCAAATCAATTGCTGATATAGAA GTCTTGCTGCTGAAACAGTCAAAAGATGTCTGCATTATTGGAATTTGGGGTATGGGAGGTATCGGCAAGACAACTATTGC AGAACAAGTGTTCAATAAAATATGTTTTGAGTATGAAGGTACCTGTTTTTTGTCAAATGTAAGAGAAGAGTTAGAAAGAC ATGGAACAATTTATTTGAAAGAAAAACTTTTCTCCACACTACTAGGAGAAGATGTGAAAATAACGTCACCAAGTGGATTG TCTTATTATATTTGGAGAAGGATTAGTCGTATGAAGGTTCTCATTGTTCTTGATGATGTGAATGATTCAGATCAGCTGGA ATTATTTGGAACTGTTGATAATTTTGGATCAGGTAGTAGAATAATTGTAACAACTCGAGATAAGCAATTGCTTATAGCTA AAGAAGTTGATGATATACACGAGGTTGGGGTATTGAGTTCTGGTGAAGCACTTGAGCTTTTCAATTTGATTGCCTTGAAC CAAAGTCACCTTGAAATGGAGTATCATGAAACTTCAAAGAGGATTGTTGATTATGCCAAAGGCATTCCATTAGTTCTTAA AGTTTTGGGTCATCTTCTTCGTGGAAAAGATCAGAAAGTATGGGAAAGCCACCTAGATAAGCTTAAGGAAATGCCGAGTA AAAAAGTTTATGATGTGATGAAATTGAGTTATGATGATCTAGATCGCAAAGAGAAAACGGTTTTTCGGGATATTTCTTGT TTCTTCAATGGAATGAATATGAAAGTGGACTCCATAAAAGCTTTATTGAAAGATCGTGAAAGTGATAATTCAGTGGCTCA TGCGTTAGAAAGGCTGAAAGATAAAGCTCTTATAATTGTCTCCAAGGATAATGTTGTATCTGTGCATGATATTATCAAAG AAATGGCTTGGGAGATTGTTCGCCAAGAATCTGATGGAAACATTGGAAACCAAAGTCGATTTGGGGACGTTGATGAAGTA TTGGAAAATGACAAGGGGACGGATGCCATTAGAATTATGCGGATGAACTTGTCAAAAATTAAGAGCAGCAACCTGAAGTT TAGCTCCAACATGTTTTCTAGGATGAGAAAACTTCAATTTCTTGATTTTTACGGGGAACGTGAAGACTACCCTGATATTC TTCCTGAGGGACTTCAATCTTTACCCAATAAATTAAGATATCTTCGTTGGATGAATTACCCTCTGAAATCCTTGCCAGAA AAATTTTCTGCAGAAAAACTTGTTATGTTGGACATGACTTATAGCAATGTGGAGATACTTTGGGATGGAGTGCAGAATCT GGTGAATTTAAAACAAGTTAAACTCCGTTGTTGTGTATTCCTGAAGGAGCTGCCCGACTTTTCAAAGGCCACAAATCTTG AAGTGTTAATTGCCAGTTTTTGTTATGACTTGACTTGTGTGCATCCATTTATTTTCTCTCTGGGAAAGCTTGAGAAATTG GATCTTAGTCACTGCTCTTCCCTCACCAGCCTTACAAGTAATGCTCAACCAAGCTGCCTCAGTTATCTCAACCTAGAAGG GTGTAAAGATCTAACAGAGTTCTCAGTGACATCAGAGAATATGATAGAACTTAATCTGAGCGACACCGGAATCAAAGCAT TGCCTTCATCATTTGGAAGTCAAAGAAAGCTTGAAATCCTTGATTTAGAACAAGGTAGAATTGAGAGCTTACCATCATGC ATTGTGAATCTCACAAGACTACGATATCTAAACCTAAGTGATTGTGAGAAGCTTCAAACATTGCCAGAACTTCCCCCCTC CGTTGAAACTCTACTTACCCGTGGCTGCAGCTCTTTGAAGACAGTGTTGTTCCCTTCAACAGCTACTGAACAATCCCAGG AGAACAAGAAAAGGGTTGAGTTCTTTCAATGTGAGAGCTTGGATGAACGTTCTCTTTGGAAAAAATAA
Protein sequence (LotjaGi3g1v0199400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVYFFVLWSFLLVLFSFVSQFLLKGRGIAAEPVSDNAPQTNKHDVLDPPQEEKYDVFVSFRGEDIRDGFLSHLADAFRQK KINAFMDDKLKRGQEIWPSLVGAIEGSLVSVIIFSENYATSRWCLNELVKILECRDKYVHTVIPVFYCVDPTDVRHQTGS YKAAFAEHTKEIDPTMVQTWRDALNKSANLSGNISSDFRNDAELLGKIINDVLHQVRRLSKPTLNSKGFVGIGKSIADIE VLLLKQSKDVCIIGIWGMGGIGKTTIAEQVFNKICFEYEGTCFLSNVREELERHGTIYLKEKLFSTLLGEDVKITSPSGL SYYIWRRISRMKVLIVLDDVNDSDQLELFGTVDNFGSGSRIIVTTRDKQLLIAKEVDDIHEVGVLSSGEALELFNLIALN QSHLEMEYHETSKRIVDYAKGIPLVLKVLGHLLRGKDQKVWESHLDKLKEMPSKKVYDVMKLSYDDLDRKEKTVFRDISC FFNGMNMKVDSIKALLKDRESDNSVAHALERLKDKALIIVSKDNVVSVHDIIKEMAWEIVRQESDGNIGNQSRFGDVDEV LENDKGTDAIRIMRMNLSKIKSSNLKFSSNMFSRMRKLQFLDFYGEREDYPDILPEGLQSLPNKLRYLRWMNYPLKSLPE KFSAEKLVMLDMTYSNVEILWDGVQNLVNLKQVKLRCCVFLKELPDFSKATNLEVLIASFCYDLTCVHPFIFSLGKLEKL DLSHCSSLTSLTSNAQPSCLSYLNLEGCKDLTEFSVTSENMIELNLSDTGIKALPSSFGSQRKLEILDLEQGRIESLPSC IVNLTRLRYLNLSDCEKLQTLPELPPSVETLLTRGCSSLKTVLFPSTATEQSQENKKRVEFFQCESLDERSLWKK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 3 | 3 | - | – | |
| SignalP_EUK | 1 | 20 | 20 | - | – | |
| Phobius | 1 | 20 | 20 | - | – | |
| TMHMM | 2 | 19 | 18 | - | – | |
| Phobius | 4 | 15 | 12 | - | – | |
| Phobius | 16 | 20 | 5 | - | – | |
| Phobius | 21 | 875 | 855 | - | – | |
| PANTHER | 47 | 873 | 827 | 0.0 | – | |
| PANTHER | 47 | 873 | 827 | 0.0 | – | |
| SUPERFAMILY | 50 | 192 | 143 | 5.89E-40 | ||
| Gene3D | 51 | 217 | 167 | 6.0E-63 | ||
| ProSiteProfiles | 52 | 190 | 139 | 25.282 | ||
| SMART | 53 | 190 | 138 | 3.2E-46 | ||
| Pfam | 53 | 225 | 173 | 1.0E-45 | ||
| SUPERFAMILY | 211 | 478 | 268 | 5.06E-59 | ||
| Gene3D | 218 | 379 | 162 | 1.8E-28 | – | |
| Pfam | 242 | 465 | 224 | 2.3E-29 | ||
| PRINTS | 252 | 267 | 16 | 7.6E-25 | – | |
| PRINTS | 327 | 341 | 15 | 7.6E-25 | – | |
| Gene3D | 385 | 468 | 84 | 4.0E-8 | – | |
| PRINTS | 419 | 433 | 15 | 7.6E-25 | – | |
| SUPERFAMILY | 454 | 545 | 92 | 2.45E-7 | ||
| Gene3D | 557 | 759 | 203 | 4.5E-26 | ||
| SUPERFAMILY | 583 | 843 | 261 | 4.08E-37 | – | |
| PRINTS | 712 | 728 | 17 | 7.6E-25 | – | |
| Gene3D | 760 | 872 | 113 | 3.3E-12 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Signal transduction | The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. | ||
| Molecular function | ADP binding | Interacting selectively and non-covalently with ADP, adenosine 5'-diphosphate. |
Expression pattern of LotjaGi3g1v0199400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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