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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0199400 |
| Transcript ID | LotjaGi3g1v0199400.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Disease resistance protein (TIR-NBS-LRR class); TAIR: AT5G17680.2 disease resistance protein (TIR-NBS-LRR class); Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|G7JKN5|G7JKN5_MEDTR Disease resistance protein (TIR-NBS-LRR class); Found in the gene: LotjaGi3g1v0199400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:29092748..29096778) extracted from Lotus japonicus Gifu genome v1.2.
ATTCAATGCCAAGTGGGAGAGTGTGAATGTGAGACTTCTAACTTAAAGATAAGGTTGACCCAAGGTCAACTGAAATTGCT TCTTCCTTCTCTATTAAGTTGCAGATCCATGATGAATTGATGATACTCCAACTCCAACATATATGACCAGAAGTAGAATT TGAATCCCAACGGCCATAGCATAAGGTAAGATATTAAAGGTTAGTTGTTGGTTTACATTTATCTCAATCAATATTTTTGG CTAAAGATCCACTAATCGGATCATCTTGCTTGCTGGTTTGTTTATCAAAACTAAATATGATAATATCCTCTTCCCTTCAT TGCTTTTGACTAACACTTTATTTGACTTTTCCACTTTCTTTCCAGTTGTTACTTACCAACCATCGACCTCATATTCATGA TCTAAAAAGAACTTGTTCCAATCCAACGACACACTCTATCTCTGAATTCAAAAATTGAATATGGTGTATTTCTTTGTCTT ATGGTCATTTCTGTTAGTGTTGTTTTCCTTTGTCAGTCAGTTCCTTCTAAAAGGGAGGGGTATAGCAGCAGAGCCTGTAT CAGACAATGCTCCTCAAACAAACAAGCATGATGTTTTAGACCCACCTCAAGAAGAGAAGTATGATGTTTTTGTTAGCTTC CGGGGCGAGGACATCCGTGACGGTTTTCTTAGCCATCTGGCTGATGCTTTTCGTCAAAAGAAAATAAACGCCTTCATGGA TGATAAGCTTAAGAGAGGACAAGAAATATGGCCATCACTTGTTGGAGCAATTGAAGGATCATTGGTTTCAGTGATCATAT TCTCTGAAAACTACGCTACTTCACGCTGGTGTTTGAATGAATTGGTGAAAATACTTGAGTGCAGAGACAAATATGTACAC ACTGTAATACCAGTTTTCTACTGCGTAGATCCCACAGATGTACGACATCAAACAGGGAGTTATAAAGCAGCATTTGCTGA GCATACAAAAGAAATCGATCCGACCATGGTGCAAACATGGAGAGATGCTTTGAATAAATCTGCTAATTTATCAGGAAATA TTTCATCAGATTTTCGGTAAGCTTTTACTATTTCTTTCCAATAAATATTTAATACTTTCTTGCTTTTTCTGACAAAATTG CAAAAGACATCTTTTTTTTCCTCTGTAACTACTTCTACTGAAATGTGCGGCTACCTTTTTAGTTACTTCTTCCACACTTA TTGGACAAGTTCAAGCTAGGACCTTGTTTGTTCATTGAATTTAGTAGTTAAATTAGACTCCAGGAATACAATTAATTTTA TTCCAACTGGCAAATAGAAATGGTACTTTTTCCTTACAGATTTCTAGATAAGAACCCTTTATTTCGTTGGGACTTGACCC TCATAATGAATTTCCATTAAAAAGAAAGGAAAAACGAAAGGAATTGTTACAACATGGGTGTCTAACACCCCAGTAAAATA CAACTTCCAACCAAGTGAGCTAATAATTACACCATTGATTTTCACTCATAGTCTGTCTCTTCTATAGGAATGATGCTGAG CTGCTTGGAAAGATCATCAATGATGTGTTGCATCAAGTAAGGAGGTTGAGTAAGCCCACACTTAACTCAAAAGGATTTGT TGGAATTGGCAAATCAATTGCTGATATAGAAGTCTTGCTGCTGAAACAGTCAAAAGATGTCTGCATTATTGGAATTTGGG GTATGGGAGGTATCGGCAAGACAACTATTGCAGAACAAGTGTTCAATAAAATATGTTTTGAGTATGAAGGTACCTGTTTT TTGTCAAATGTAAGAGAAGAGTTAGAAAGACATGGAACAATTTATTTGAAAGAAAAACTTTTCTCCACACTACTAGGAGA AGATGTGAAAATAACGTCACCAAGTGGATTGTCTTATTATATTTGGAGAAGGATTAGTCGTATGAAGGTTCTCATTGTTC TTGATGATGTGAATGATTCAGATCAGCTGGAATTATTTGGAACTGTTGATAATTTTGGATCAGGTAGTAGAATAATTGTA ACAACTCGAGATAAGCAATTGCTTATAGCTAAAGAAGTTGATGATATACACGAGGTTGGGGTATTGAGTTCTGGTGAAGC ACTTGAGCTTTTCAATTTGATTGCCTTGAACCAAAGTCACCTTGAAATGGAGTATCATGAAACTTCAAAGAGGATTGTTG ATTATGCCAAAGGCATTCCATTAGTTCTTAAAGTTTTGGGTCATCTTCTTCGTGGAAAAGATCAGAAAGTATGGGAAAGC CACCTAGATAAGCTTAAGGAAATGCCGAGTAAAAAAGTTTATGATGTGATGAAATTGAGTTATGATGATCTAGATCGCAA AGAGAAAACGGTTTTTCGGGATATTTCTTGTTTCTTCAATGGAATGAATATGAAAGTGGACTCCATAAAAGCTTTATTGA AAGATCGTGAAAGTGATAATTCAGTGGCTCATGCGTTAGAAAGGCTGAAAGATAAAGCTCTTATAATTGTCTCCAAGGAT AATGTTGTATCTGTGCATGATATTATCAAAGAAATGGCTTGGGAGATTGTTCGCCAAGAATCTGATGGAAACATTGGAAA CCAAAGTCGATTTGGGGACGTTGATGAAGTATTGGAAAATGACAAGGTAATAGCCTAAATTATAATAACGTCTGTTAGAT AAACAGTTGATATGTGGCTTTTAATGGTGTTTAATTTTTTTCTTTCCTACATTGATTACAGGGGACGGATGCCATTAGAA TTATGCGGATGAACTTGTCAAAAATTAAGAGCAGCAACCTGAAGTTTAGCTCCAACATGTTTTCTAGGATGAGAAAACTT CAATTTCTTGATTTTTACGGGGAACGTGAAGACTACCCTGATATTCTTCCTGAGGGACTTCAATCTTTACCCAATAAATT AAGATATCTTCGTTGGATGAATTACCCTCTGAAATCCTTGCCAGAAAAATTTTCTGCAGAAAAACTTGTTATGTTGGACA TGACTTATAGCAATGTGGAGATACTTTGGGATGGAGTGCAGGTAATTCAAACATTGTGGGCATGTGTTGTGTCTTCATTT TGTGCTCTTAATTGAAGGAATACAAAACTAACATTAGCTCATGTGCTAGCTATGTCTTCATTTTGTTTTATTTTATTACA GAATCTGGTGAATTTAAAACAAGTTAAACTCCGTTGTTGTGTATTCCTGAAGGAGCTGCCCGACTTTTCAAAGGCCACAA ATCTTGAAGTGTTAATTGCCAGTTTTTGTTATGACTTGACTTGTGTGCATCCATTTATTTTCTCTCTGGGAAAGCTTGAG AAATTGGATCTTAGTCACTGCTCTTCCCTCACCAGCCTTACAAGTAATGCTCAACCAAGCTGCCTCAGTTATCTCAACCT AGAAGGGTGTAAAGATCTAACAGAGTTCTCAGTGACATCAGAGAATATGATAGAACTTAATCTGAGCGACACCGGAATCA AAGCATTGCCTTCATCATTTGGAAGTCAAAGAAAGCTTGAAATCCTTGATTTAGAACAAGGTAGAATTGAGAGCTTACCA TCATGCATTGTGAATCTCACAAGACTACGATATCTAAACCTAAGTGATTGTGAGAAGCTTCAAACATTGCCAGAACTTCC CCCCTCCGTTGAAACTCTACTTACCCGTGGCTGCAGCTCTTTGAAGACAGTGTTGTTCCCTTCAACAGCTACTGAACAAT CCCAGGAGAACAAGAAAAGGGTTGAGTTCTTTCAATGTGAGAGCTTGGATGAACGTTCTCTTTGGAAAAAATAACTTGTT GGGGAGATGCTGCAACACTTAACAAAAGGATGTTGATGACGGAAGCGATTCAAAGCGTGTCTACACACTAACTTTTAGGT TCAATTCGCCCCCACCAATTAATGTATATTGGATGCAATTGAGAAGAACGACGAATTTCCTTCAGGATACTTTGAAAACC TGGATGTGATTTGCACTAACACAACAAACATATCTTTAATAATAGTTTACATAGAGATGATTCCCAAAATTCACTCATGC ATTAGTGCAGTGAAAGATGATTTAGAATAAT
CDS sequence (LotjaGi3g1v0199400.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGTATTTCTTTGTCTTATGGTCATTTCTGTTAGTGTTGTTTTCCTTTGTCAGTCAGTTCCTTCTAAAAGGGAGGGG TATAGCAGCAGAGCCTGTATCAGACAATGCTCCTCAAACAAACAAGCATGATGTTTTAGACCCACCTCAAGAAGAGAAGT ATGATGTTTTTGTTAGCTTCCGGGGCGAGGACATCCGTGACGGTTTTCTTAGCCATCTGGCTGATGCTTTTCGTCAAAAG AAAATAAACGCCTTCATGGATGATAAGCTTAAGAGAGGACAAGAAATATGGCCATCACTTGTTGGAGCAATTGAAGGATC ATTGGTTTCAGTGATCATATTCTCTGAAAACTACGCTACTTCACGCTGGTGTTTGAATGAATTGGTGAAAATACTTGAGT GCAGAGACAAATATGTACACACTGTAATACCAGTTTTCTACTGCGTAGATCCCACAGATGTACGACATCAAACAGGGAGT TATAAAGCAGCATTTGCTGAGCATACAAAAGAAATCGATCCGACCATGGTGCAAACATGGAGAGATGCTTTGAATAAATC TGCTAATTTATCAGGAAATATTTCATCAGATTTTCGGAATGATGCTGAGCTGCTTGGAAAGATCATCAATGATGTGTTGC ATCAAGTAAGGAGGTTGAGTAAGCCCACACTTAACTCAAAAGGATTTGTTGGAATTGGCAAATCAATTGCTGATATAGAA GTCTTGCTGCTGAAACAGTCAAAAGATGTCTGCATTATTGGAATTTGGGGTATGGGAGGTATCGGCAAGACAACTATTGC AGAACAAGTGTTCAATAAAATATGTTTTGAGTATGAAGGTACCTGTTTTTTGTCAAATGTAAGAGAAGAGTTAGAAAGAC ATGGAACAATTTATTTGAAAGAAAAACTTTTCTCCACACTACTAGGAGAAGATGTGAAAATAACGTCACCAAGTGGATTG TCTTATTATATTTGGAGAAGGATTAGTCGTATGAAGGTTCTCATTGTTCTTGATGATGTGAATGATTCAGATCAGCTGGA ATTATTTGGAACTGTTGATAATTTTGGATCAGGTAGTAGAATAATTGTAACAACTCGAGATAAGCAATTGCTTATAGCTA AAGAAGTTGATGATATACACGAGGTTGGGGTATTGAGTTCTGGTGAAGCACTTGAGCTTTTCAATTTGATTGCCTTGAAC CAAAGTCACCTTGAAATGGAGTATCATGAAACTTCAAAGAGGATTGTTGATTATGCCAAAGGCATTCCATTAGTTCTTAA AGTTTTGGGTCATCTTCTTCGTGGAAAAGATCAGAAAGTATGGGAAAGCCACCTAGATAAGCTTAAGGAAATGCCGAGTA AAAAAGTTTATGATGTGATGAAATTGAGTTATGATGATCTAGATCGCAAAGAGAAAACGGTTTTTCGGGATATTTCTTGT TTCTTCAATGGAATGAATATGAAAGTGGACTCCATAAAAGCTTTATTGAAAGATCGTGAAAGTGATAATTCAGTGGCTCA TGCGTTAGAAAGGCTGAAAGATAAAGCTCTTATAATTGTCTCCAAGGATAATGTTGTATCTGTGCATGATATTATCAAAG AAATGGCTTGGGAGATTGTTCGCCAAGAATCTGATGGAAACATTGGAAACCAAAGTCGATTTGGGGACGTTGATGAAGTA TTGGAAAATGACAAGGGGACGGATGCCATTAGAATTATGCGGATGAACTTGTCAAAAATTAAGAGCAGCAACCTGAAGTT TAGCTCCAACATGTTTTCTAGGATGAGAAAACTTCAATTTCTTGATTTTTACGGGGAACGTGAAGACTACCCTGATATTC TTCCTGAGGGACTTCAATCTTTACCCAATAAATTAAGATATCTTCGTTGGATGAATTACCCTCTGAAATCCTTGCCAGAA AAATTTTCTGCAGAAAAACTTGTTATGTTGGACATGACTTATAGCAATGTGGAGATACTTTGGGATGGAGTGCAGGTAAT TCAAACATTGTGGGCATGTGTTGTGTCTTCATTTTGTGCTCTTAATTGA
Protein sequence (LotjaGi3g1v0199400.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVYFFVLWSFLLVLFSFVSQFLLKGRGIAAEPVSDNAPQTNKHDVLDPPQEEKYDVFVSFRGEDIRDGFLSHLADAFRQK KINAFMDDKLKRGQEIWPSLVGAIEGSLVSVIIFSENYATSRWCLNELVKILECRDKYVHTVIPVFYCVDPTDVRHQTGS YKAAFAEHTKEIDPTMVQTWRDALNKSANLSGNISSDFRNDAELLGKIINDVLHQVRRLSKPTLNSKGFVGIGKSIADIE VLLLKQSKDVCIIGIWGMGGIGKTTIAEQVFNKICFEYEGTCFLSNVREELERHGTIYLKEKLFSTLLGEDVKITSPSGL SYYIWRRISRMKVLIVLDDVNDSDQLELFGTVDNFGSGSRIIVTTRDKQLLIAKEVDDIHEVGVLSSGEALELFNLIALN QSHLEMEYHETSKRIVDYAKGIPLVLKVLGHLLRGKDQKVWESHLDKLKEMPSKKVYDVMKLSYDDLDRKEKTVFRDISC FFNGMNMKVDSIKALLKDRESDNSVAHALERLKDKALIIVSKDNVVSVHDIIKEMAWEIVRQESDGNIGNQSRFGDVDEV LENDKGTDAIRIMRMNLSKIKSSNLKFSSNMFSRMRKLQFLDFYGEREDYPDILPEGLQSLPNKLRYLRWMNYPLKSLPE KFSAEKLVMLDMTYSNVEILWDGVQVIQTLWACVVSSFCALN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 20 | 20 | - | – | |
| Phobius | 1 | 20 | 20 | - | – | |
| Phobius | 1 | 3 | 3 | - | – | |
| TMHMM | 2 | 19 | 18 | - | – | |
| Phobius | 4 | 15 | 12 | - | – | |
| Phobius | 16 | 20 | 5 | - | – | |
| Phobius | 21 | 682 | 662 | - | – | |
| PANTHER | 47 | 667 | 621 | 2.6E-256 | – | |
| PANTHER | 47 | 667 | 621 | 2.6E-256 | – | |
| SUPERFAMILY | 50 | 192 | 143 | 3.92E-40 | ||
| Gene3D | 51 | 217 | 167 | 3.9E-63 | ||
| ProSiteProfiles | 52 | 190 | 139 | 25.282 | ||
| SMART | 53 | 190 | 138 | 3.2E-46 | ||
| Pfam | 53 | 225 | 173 | 6.6E-46 | ||
| SUPERFAMILY | 211 | 478 | 268 | 2.78E-59 | ||
| Gene3D | 218 | 379 | 162 | 1.2E-28 | – | |
| Pfam | 242 | 465 | 224 | 1.2E-29 | ||
| PRINTS | 252 | 267 | 16 | 4.1E-20 | – | |
| PRINTS | 327 | 341 | 15 | 4.1E-20 | – | |
| Gene3D | 385 | 468 | 84 | 2.9E-8 | – | |
| PRINTS | 419 | 433 | 15 | 4.1E-20 | – | |
| SUPERFAMILY | 454 | 545 | 92 | 1.71E-7 | ||
| Gene3D | 559 | 679 | 121 | 1.4E-6 | ||
| PRINTS | 575 | 591 | 17 | 4.1E-20 | – | |
| SUPERFAMILY | 576 | 660 | 85 | 3.23E-5 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Signal transduction | The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. | ||
| Molecular function | ADP binding | Interacting selectively and non-covalently with ADP, adenosine 5'-diphosphate. |
Expression pattern of LotjaGi3g1v0199400.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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