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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0203100 |
| Transcript ID | LotjaGi3g1v0203100.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Regulator of chromosome condensation (RCC1) family protein; TAIR: AT4G14368.1 Regulator of chromosome condensation (RCC1) family protein; Swiss-Prot: sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1; TrEMBL-Plants: tr|A0A1J7FNN1|A0A1J7FNN1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0203100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:29640742..29647427) extracted from Lotus japonicus Gifu genome v1.2.
TGACCCAGTACTTTCCTCCCATTTCGCCTTCTCTCTCTCTTTCACTCATCTGCAATTTTTCCCCTTATACTTCGCTTAAC TTGATTCTACCCAAAAACAGAGACACTCAATGTTTCAATTCCATAACCCCTTCTGACAAATTTGATGATGATTCCCTGGT TTTATCATTAGATGCACACACAAAATACAGTTCTTTGAGCTTTGAATCTTCATTATTAGAGCCATTTTTATGAGAGGATG AATTTAAGAGGTTAAGGATCTATGAAAATGTGGACACGAAAACCTACCTAGCATTTTTGTTGTCCCTTGAGTTTCATCTT TGGCAATTACCATCCCATTTTTTCAGATGGAATGGCAGATCCTGCCAATTATGGGAATCTTGAGCATGAAACTAAACAGG TTAGTTTCTTAAATATTGTATGATATATGAATACTTAGTTATGATTATTATGTGGAGAAATATTTTGTCACATGGTTTGC CTTGATTTCTGTTGGTGTGTTACTCTAAGAGTAGATAAAAATGTCTCATTTTGGTATTGTCATGTTATAAGATGTGTGTG TTTATATGTTTTTACTTTTATACGAATAAGATTGTATGAATATAAGGAACACAAATTGTGCCATTCTTGGAGAAAAAACA AGAAAACCATTTTACTGTCATTGTGCATACACTTGGAAACTTTATATGATGTGGAAGTAATTTTCTGTTTATTCGTTGAA TTTTCTTTCCTTTATGTACAGTCAATGTTTGATATTTATATGGTTTTATGAAAGCTCAAGTAGCTTAGTGCTTTGTCAAG TAGAGTTTAATTTATTGATTACGCTCATTGGTTTAATGAAAGCTACAACGCTCGGTTAATTAAGTAAAAATAGTAGGGAA GAAAAGCCCTGCTAATAGGGGCTTAATTAGCTGAAATTATTTAATGAACCTCATATCTAGAGTTTCACTCAATAATTCAG AGAGCTAAAAATGAATTTTCAATAAATATGTTGCCAGTAGAGGTATTGTTTGCAAGTCTTGAGCCATTCATTTCAACAGA ACAACATAATATGGGTGTTAGAAGGACATAAGTGTGTTAAAAAATTCATACAAATGATCATTTTTACTTGTAAATGCTTA CAATATATGACAATTTCATGTAGTGAATGATATGGACTTCCAAATCATGAACTTACATGAATGTTTGGAAGTTATTTGAA TTGAAATCATTAACTTCTCTGTGTTCTGTAAATACTGTTGTTGTTGATTGGACTTCTAAAAAATATATGAACTTACCTGA ATGTTTGGAAGTTATTTCAATTGTATAATGGAATATTTGACTCTTGATTAGTTTTACTCAATTTTGTAACATTTTGCATT TGCATGAATCCATATTATGAAATGAAGTCCTTACAAGTGGTTATTGTTTTTGTGAATTCAGGGATTGTGAGCAACAAATA CTTGTTTGCAAGTTTATATTTGACTTTAATCAAAATGGACATATTATTTGTGCAACACTAGAGTTAACTTTGGGTGTTGC TCCTAGTAAGCTCAGATGCGGGGTTAAGACGTGCAAATATGAATTCAAGGATAAGTGTTGGAGATGGTTTCCGTGTTAGT GCATCAAGTACACCGAGTAATTCAAGCGGAGGATCTGAACCAGATGACATAGAGTCATTAGGTGATGTCTACATATGGGG AGAGATTATGGCAAATGGGGTTTCACCTGATAAGATTGGAACTCAGGTCCCTTCTAAGATAGATGTGTTGATTCCTAAAA TCTTAGAGTCAAATGCAATTATTGATGTTAATCAAATTGCATCTGGTACACACCACCATGCAATAGTTACCAGGCAAGGT GATGTTTTTACTTGGGGTGAAGAATCTGGGGGAAGACTTGGTCATGGAATTGATAGAAGTTTTGGCCAACCTCATTTGGT TGATTTTCTTATTTCTAAATTTGATTTTGTTGCGTGTGGAGAGTATCATACATGTGCTATATCTAAATTTGATGATCTAT TCACATGGGGAGATGGTGCACATAATGTTGGACTTCTTGGCCATGGTACCGAGGCTAGCCATTGGATACCAAAAAGGGTT GATGGCCCTCTAGAAGGAATTCAAGTTGTATCTGTTGCTTGCGGCACATGGCATACGGCATTGGCAACCTCGAATGGAAA ATTGTTTACCTTCGGTGATGGAGCATTTGGTGTCTTGGGCCATGGAGATAAAGAGAGTGTTTTGTATCCAAAGGAGGTAC AATTATTAAACGGACTAAAGACTATTAAGGTTGCATGTGGAGCATGGCATACTGCTGCTATTATAGAGGTTATGTTTCAG TCTGCGGGTTCAAAAGCATCTTCATGGAAACTCTTCACATGGGGTGATGGAGACAAGTATCGCTTGGGTCATGGAAACAA GGAAACATACCTGCAACCAACTCGCGTCTCTTCTCTTATTGAATATAATTTCCACCAGATAGCATGTGGGCACACTATGA CTGTTGCTCTCACTACATCTGGTCATGTCTTTACAATGGGAGGCACTGAAAATGGTCAATTAGGAAATCCTGCGGCGGCT GGAAAAGTACCTACTCTAGTTCAAGATAAGTTGCTTGGTGAGTTTGTTGAGGAAATATCATGTGGAGCACATCATGTTGT TGTCTTGACTTCAAAAAGTGAGCTATACACTTGGGGAAATGGTGCCAATGGAAGACTGGGACATGGTGACACAGAAGATA GGAAGTCTCCTTCACTGGTGGTAGCCTTGAAAGATAGGCATATAAAAAGTATCTCATGTGGCTCAAATTGTACATCTTGT ATATGCAAACACAAATGGGTCTCTGCAAATGATCAACCTGTTTGCTCTAATTGTCGACAAGCATTTGGCTTAACAAGAAA ACGACACAATTGTAATAATTGTGGGTTGGCTTACTGCCATGCTTGTAGTTCGAAAAAAGCATTCAAAGCAAAATTTGCTC CTAGCCCAGAAAAGCCTCATCGCCGTATGTGATAATTGTTATGCTAAGCTTAAAGTTGTTGAGGTTGGTGATGCATCCAA GTTTAATGGAAAAGTTACTTCTGATTGTTCTATACATGTCAGGGACAGATTAAGCCAGAGAGAAGTAAGGTCTACAAGAA CTCTCTTGTCGCCCATCACTGAACCGGTGAAATATCTTGAGATAAAGAATAACAAGCCTGGAACAAATTATGGTTCTATT TCCTTTATCCGTGCTTCTCAAGTTCCTTCACATTTGAAATTGAATGATATTGCATTTCCAAGTTCATTGAGTTCTATTCA AAGTGTTTTCAAGCCTCCTACATCTCCCAGTCCATCACAAACTCCACCAACTGGTTCAAGTACCACATCATCATGTACAA GTAGACCAAGCCCTCAATGCTCAACTAGTCCAAGATTGTCTAGAAATATTTTAAATAGTTTGAGAAGGACAAATAATTGT TTGAATCAAGAAGTCTCAAATTTAAAATACCAAGTAAATTTATTACCATTTTAACTATAGCAATCACATCCTTTGTTCTT GTAGAAGAAACATGCTTTGTCCCTATTAATGATTTTGTGGAAATTTCTGTTTACAGATTCAAAATTTGAAGAAAATAGAT GGCATGAAAGATGTCGAAATTCAGAAGCTTCAGAGAAAGGCTACAGAAACTATTGCCTTAGCGGCTGTGGAATCTTCTAG TCATAGAGAAGTAAAAGAATTTATTGAATCTATTATAGATCAGGTATCTACAATCTGTACTCTGGATTAATAATTTAAAT TATTTAATTTATTATTCAAAATTAGTGAGAATTAGAATCCAAAGTAAGATACATAGTTATATTGCAATATATCTACTAGA GCATAGTCTGGTAGTTATAATAAAAAACACAAGTGGCCTACACCTAGCACTTCAAACTTAAGACTTTTAATAGAGTATTG GCATGACATGAAATACTTCTTGATTAAGTACTTGGGAGTCTTGTCTATGTTATCTTCACTATGATTTATGAACTTGTGCT CTATCTATATATTTTTCCAAAATACCTTTGATTAATGTAACATTAAAGATAAAAATCTTTTGAGTTTAGCATGCAATATT AGTTTAAATAATTTCTTGGTTAACTTTATATGTAATGCATGAGTATGACACAACCTTATTGATGATGCATAATGGGGAAG ATAAATTGGGAAAATAAAAATGTCACATATTAGGTTTTTTAGTTTTCTATCCTAAATAACTAATTTTCTTGTCTTTGGTT TATTCAGTTAAAACCAATGACTGAGAAGCTACCACTTGAAGTTCCAGAAAGTGAAGATTTGAGAACCATGTACATTCAAG GTGAAGACTTTCTAAAAGATAATTCAAAATCGAAAACACCATCCTTGCTATCAATGTTGGAGTTCAAGCAACAAAATGCT CCTGAAAGACTTACTGCGGACAATGACTCTTCTAAACTGCAAGAGAACATACTAGAAGAAAACATTAATGTTGCAGGCGT TGAGCCTTGTCAAGATGGAGAAAAATACCTTGATGAAATTAATGGATCTGCATTAGAGTGTAAGAAACAAAATTCACATG ATATACCTAATGCTAATGCTAATGCTAATGCTACAGGAGTTGACCCTTGTCATGATGGAGGAAAATACATATATGAAATT AAAGGATCCACATTGGAGTATAAGCAACAAAATTCACAAGACATATCTACCTCGGATCATGGCACTTTAGAATCACGAGA ACTCATAGTAGACGAAAATGTTAATGTTGCAGGAGTTGACCCTAGTCTCGAGGGAGGAAAATACCTTGATGAAATCAATG AATCCTCATCGGAGTATAAGAAACAAAATGCACATGATATACCTACCTCAGATAGCCGCACTTCAGAATCACAAGAACAC ATACTAGAAGAAAATGTTGATGCTGCAGAAGATGACCATTTTCAAGATGTAGATAATTTCTTTGAAGTAATTAATGGATC AAAGTTGGATTCTGTGCAACAAAAAGAACCTGATATACTAAGATCATATAGTGGTACTTATGAACCTCAAGAGCAGAGAT TAGAAGAAAAGTTTAACACTACAAGAGCTCATCAATCTCACAATGGAAGATATGTTCTTCAAGGAAGTAATGCATCATCT GTATCTAGTCTTGAAGAGGAAATGTCGCCACAAAGCTCAGAAAACGGTTCAAATTCACTACAGTCTTCAAAATATGAGAG ACAACAAGAAGCACAAATTATTGAAAAGTTCGAATCTGGTGTTTATGCGATAATCATGTTTCGCTCTGATGGTATCAAAA TTTTTAAACGAGTTAAGTTCAGGTAAGTTACATGTTTAGCTTCCATCTCAGTATGATTTGAAGTTTTTACATATAAATAT TCGAATATCATGCTATGTTGAAATGTGAACTAGTATGCTTTAACAAAATAACAACTACATTATTTAGATCCATCTCATGT GATATTAAATTTTAGTGTTAGGTTCTGGAAAAATAGCTTTTTACTAACACCATGATTTTGAGAGATCCCAAATCAAAATT AAGCATGCAGTTTGTATGCATATTGTTAACCATATCTCATTTCTTTTGTCACTAACATATGCTCTTGTTTGATCACCTTA TGAAAATGAAAAGCTATCATGTTATCATATTGTTTGTTAGCTTTAATCTTATCTTTATTAGAAGTGGTAACTTCTTTATG GAAGTATAATGCACATGGTGTAATTTAAAATTTTGATATGGGTTTTTCTTCACTTTGGGATATGTTTATGTTCCAACTAA ATGCACCTTAATCCTAAAGGATAGAAAAGAACACAATTTTTTTTTCATTTTGAGTAAAGTAGAATGGATGGAAAAAGGGA ATCTAAATAAGTACATAGTTATTTTCAAATTACAAAATTAATAATTACTTGCATTTAAGTGACTTTTTATGATCACATGG TTTTAGAAAAGATCATAATGATTTGGTGGTTTTAGATAGAACACACATGACTCATGGAATTGATCTAACTTAAAGTGAAA AGTGTTTTTGATGATTATAGTCATTGGCTTATTATTATTTAGATGAATCTGTTGGAAACCTTAGTATTTTTGTACTCTAA TTTTCTTATCATTTGTGTGCAGTAAGCGAAGGTTCACCCAAAATCAAGCAGAAGAGTGGTGGAAGCAGAACAAAGCTAGG GTTCTTAGGAAATATTGTCCAATACATCAAAAACGAACATATGAATCATCGAACATCACACCACATGCTAAAGAAACTAT TGATTTATCGACTTCCAAAATTTAAACCTTATCTTACTATAGGAATCTTGATGATATGATTTCACATAAAAGGATCATCA ATTAATCGAAAAGAAAGGCATCTTTAAAACACCGAGCTTGTTAGATTTCCAATCAACTTGAAAAAAAAAATTATGTTTAC AAGAAGAAAAATAACTTACTTTTCTTTTTAACGAGGAGAGAGAAAAGAAAATTGATTAAAAAACAAAAGGCTTAATGGTC AAATTGGTCCCTGTGTTTGTAGTGACTTTTGATTTTAGTCCCTCCCGGAAAAAACTAGTCGATATCTTCCTGCAGTTGCA AGTATTTTGGTTCTAGTCCTTACTGGAAGGGGGAGCTCCGGTGACCCCCACCTGGCACGCTAACGTGTTAAATCAGTACT AAGTGGAAATTTTTCAATTTTTTTTAAATTAAAACCTTAAAAACCC
CDS sequence (LotjaGi3g1v0203100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATTCAAGGATAAGTGTTGGAGATGGTTTCCGTGTTAGTGCATCAAGTACACCGAGTAATTCAAGCGGAGGATCTGA ACCAGATGACATAGAGTCATTAGGTGATGTCTACATATGGGGAGAGATTATGGCAAATGGGGTTTCACCTGATAAGATTG GAACTCAGGTCCCTTCTAAGATAGATGTGTTGATTCCTAAAATCTTAGAGTCAAATGCAATTATTGATGTTAATCAAATT GCATCTGGTACACACCACCATGCAATAGTTACCAGGCAAGGTGATGTTTTTACTTGGGGTGAAGAATCTGGGGGAAGACT TGGTCATGGAATTGATAGAAGTTTTGGCCAACCTCATTTGGTTGATTTTCTTATTTCTAAATTTGATTTTGTTGCGTGTG GAGAGTATCATACATGTGCTATATCTAAATTTGATGATCTATTCACATGGGGAGATGGTGCACATAATGTTGGACTTCTT GGCCATGGTACCGAGGCTAGCCATTGGATACCAAAAAGGGTTGATGGCCCTCTAGAAGGAATTCAAGTTGTATCTGTTGC TTGCGGCACATGGCATACGGCATTGGCAACCTCGAATGGAAAATTGTTTACCTTCGGTGATGGAGCATTTGGTGTCTTGG GCCATGGAGATAAAGAGAGTGTTTTGTATCCAAAGGAGGTACAATTATTAAACGGACTAAAGACTATTAAGGTTGCATGT GGAGCATGGCATACTGCTGCTATTATAGAGGTTATGTTTCAGTCTGCGGGTTCAAAAGCATCTTCATGGAAACTCTTCAC ATGGGGTGATGGAGACAAGTATCGCTTGGGTCATGGAAACAAGGAAACATACCTGCAACCAACTCGCGTCTCTTCTCTTA TTGAATATAATTTCCACCAGATAGCATGTGGGCACACTATGACTGTTGCTCTCACTACATCTGGTCATGTCTTTACAATG GGAGGCACTGAAAATGGTCAATTAGGAAATCCTGCGGCGGCTGGAAAAGTACCTACTCTAGTTCAAGATAAGTTGCTTGG TGAGTTTGTTGAGGAAATATCATGTGGAGCACATCATGTTGTTGTCTTGACTTCAAAAAGTGAGCTATACACTTGGGGAA ATGGTGCCAATGGAAGACTGGGACATGGTGACACAGAAGATAGGAAGTCTCCTTCACTGGTGGTAGCCTTGAAAGATAGG CATATAAAAAGTATCTCATGTGGCTCAAATTGTACATCTTGTATATGCAAACACAAATGGGTCTCTGCAAATGATCAACC TGTTTGCTCTAATTGTCGACAAGCATTTGGCTTAACAAGAAAACGACACAATTGTAATAATTGTGGGTTGGCTTACTGCC ATGCTTGTAGTTCGAAAAAAGCATTCAAAGCAAAATTTGCTCCTAGCCCAGAAAAGCCTCATCGCCGTATGTGA
Protein sequence (LotjaGi3g1v0203100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNSRISVGDGFRVSASSTPSNSSGGSEPDDIESLGDVYIWGEIMANGVSPDKIGTQVPSKIDVLIPKILESNAIIDVNQI ASGTHHHAIVTRQGDVFTWGEESGGRLGHGIDRSFGQPHLVDFLISKFDFVACGEYHTCAISKFDDLFTWGDGAHNVGLL GHGTEASHWIPKRVDGPLEGIQVVSVACGTWHTALATSNGKLFTFGDGAFGVLGHGDKESVLYPKEVQLLNGLKTIKVAC GAWHTAAIIEVMFQSAGSKASSWKLFTWGDGDKYRLGHGNKETYLQPTRVSSLIEYNFHQIACGHTMTVALTTSGHVFTM GGTENGQLGNPAAAGKVPTLVQDKLLGEFVEEISCGAHHVVVLTSKSELYTWGNGANGRLGHGDTEDRKSPSLVVALKDR HIKSISCGSNCTSCICKHKWVSANDQPVCSNCRQAFGLTRKRHNCNNCGLAYCHACSSKKAFKAKFAPSPEKPHRRM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 30 | 30 | - | – | |
| MobiDBLite | 1 | 28 | 28 | - | – | |
| PANTHER | 1 | 475 | 475 | 5.4E-300 | – | |
| PANTHER | 1 | 475 | 475 | 5.4E-300 | – | |
| Gene3D | 18 | 250 | 233 | 2.2E-53 | ||
| SUPERFAMILY | 34 | 420 | 387 | 7.76E-91 | ||
| ProSiteProfiles | 35 | 93 | 59 | 9.077 | ||
| ProSiteProfiles | 94 | 144 | 51 | 13.137 | ||
| Pfam | 94 | 141 | 48 | 2.2E-8 | ||
| PRINTS | 96 | 112 | 17 | 3.0E-15 | ||
| ProSiteProfiles | 145 | 199 | 55 | 13.64 | ||
| PRINTS | 145 | 161 | 17 | 3.0E-15 | ||
| Pfam | 146 | 195 | 50 | 2.3E-9 | ||
| PRINTS | 186 | 202 | 17 | 3.0E-15 | ||
| Pfam | 199 | 248 | 50 | 2.2E-14 | ||
| ProSiteProfiles | 200 | 251 | 52 | 13.459 | ||
| PRINTS | 202 | 216 | 15 | 3.0E-15 | ||
| ProSitePatterns | 238 | 248 | 11 | - | ||
| Gene3D | 251 | 423 | 173 | 1.7E-44 | ||
| ProSiteProfiles | 263 | 314 | 52 | 13.439 | ||
| Pfam | 265 | 311 | 47 | 1.4E-11 | ||
| PRINTS | 304 | 322 | 19 | 3.0E-15 | ||
| Pfam | 314 | 363 | 50 | 9.0E-7 | ||
| ProSiteProfiles | 315 | 366 | 52 | 13.117 | ||
| PRINTS | 362 | 383 | 22 | 3.0E-15 | ||
| ProSiteProfiles | 367 | 418 | 52 | 13.78 | ||
| Pfam | 368 | 415 | 48 | 5.4E-12 | ||
| SMART | 417 | 474 | 58 | 3.1E-5 | ||
| Pfam | 419 | 464 | 46 | 1.0E-9 | ||
| SUPERFAMILY | 419 | 465 | 47 | 5.28E-12 | ||
| ProSiteProfiles | 423 | 459 | 37 | 8.611 | ||
| Gene3D | 424 | 476 | 53 | 6.5E-11 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. |
Expression pattern of LotjaGi3g1v0203100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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