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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0245200 |
| Transcript ID | LotjaGi3g1v0245200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cysteine protease; TAIR: AT1G06260.1 Cysteine proteinases superfamily protein; Swiss-Prot: sp|Q9FJ47|SAG12_ARATH Senescence-specific cysteine protease SAG12; TrEMBL-Plants: tr|A0A1J7H619|A0A1J7H619_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0245200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:40114770..40118851) extracted from Lotus japonicus Gifu genome v1.2.
TATTTATTTATGATTTTTATGAAAGCACGTTCCCACTCCAATTGCATTGAGAACTAGCCATGATGATAGCTACAAAATTA ACCTACACTTTTTTCACTCTTCTCATGGTGAGCAATCTATGGATAATTAGTGCAAGTGAATGTCCTCCAATGCATAAGAA GAACTCATCCAACTTAGAAGCCAAGAGGAAGAGGTTTGAAAGTTGGCAGAAACAACATGGCCGAAAATATGAGAATCCAG AAGAATGGCAAGTTCGTTTCGACATTTACCAAACAAATGTTGAGTTTATAGAATGCATAAACTCTCAAAACCGCTCCTAC CATCTCACAGACAACAAATTTGCAGATCTTACAAATGAAGAGTTCAAAAGAATTTATATGGGTTATGGAAAAACTAGTTT GAGCTGTAATGCAGGAGCAGGATTATTAAGGTATAATGGACATGGGGATCTTCCGGAAAGCATCGATTGGAGGAAGAAAG GAGCTGTGACTGACATCAAGGATCAAGGCACTTGTGGTAAAGTTTCTTGAAATATAAGTGCACATTGTTTAGGGATGCCA AATTCTATTTTATTCAATTTCATTTATTATGCAGTTCAGTTATGTTATTATTTTTCTTAAATAACCAACTAATTGATCAG TAACTTGTTCATCTTGATTTTGGAAATGGAATTGAGATCTTTGAAAAAAAACAACCAAAGAAAAGTAAAGGGATATGACT CATTAATTCAATTTTTTAAAATAGTACCTGATTTTCTCACGAACTTCATACTACACTCATTTTAACACTCTTGCATTCAT CCATTGAAACTCATGTGGGAACAACTAAATCATTTGGGTCCCACACTCAATTTAGCGGGACCCACGTGAACTTTAATTGT TAAACTAAGTCTTGTTAGCACTCGTCTTGTTACTATACCAATGCAAAGTAGATGCTTAGTGTTTGTTTAGATACACGCCA GAAAACCACAGCGAAGTCAAATCATGGTTGATAGAAGCAAAAAGCTAAGAGAAGTTTCTTTTTTCCCCATGATTTTGACT TCACCGTAGTTTTCAACCATGTATTCAAACATAGACTTAGTCTCATATTATGTTTTTAACTTCTTTGAAGTTATATCTTC ATGCAGGAAGCTGTTGGGCATTCTCTGCAGTGGCAGCAGTGGAAGGGATACACCAAATAAAATCAGGAAACTTGATATCT CTGTCTGAACAAGAACTCATAGACTGTGATGTTGGAAATGGTAACCAAGGCTGTGCAGGTGGCTTAATGGAGATAGCCTT CACATTCATAAAAAAGAATGGTGGGCTAACCACAGAGGAAGAGTATCCTTATAAAGGGAAAGATGGAACCTGTAACATGG AGAAAGCAGCACATCATGCTGTCAGTATAAGTGGCCATGAAAAAGTACCTGCTAGTAATGAGGCCATGCTCAAAGCTGCA GCAGCTAATCAACCTGTCTCTGTTGCTATTGATGCCGGAGGTTTTCTTTTTCAGCTTTACTCAGGAGGTGTTTTCTTTGG CTTTTGTGGGAAGCAACTCAATCATGCAGTGACGATAGTTGGGTACGGAAGACAAGTAAATGGTCCAAAGTACTGGCTTG TGAAGAATTCATGGGGTGCTGACTGGGGTGAATCTGGTTATATGAAGATACTGCGTGATACTCTGGATAAAGATGGTACT TGTGGCATTGCCATGGATGCTAGCTACCCTACCCTGTCCACAATTAATTACTATTAGTCTATTAGTGTGTTTTTGAAAAT TTATCAAGTTATTGGAGCAAGCTTCTAAGAATAACTTTTGTGTCGAGAAGAAATGACTCTGATAGATTTAACTAAGGATC CAATATGCCGAAAGCTGAATGACATGCTATATTTATGGTTGTACAATGAAAGATGTCATCAATTAATAGTTAGAGAATAA CACTCTTTACAATGTAACTAAAGTGAAAAGGGAAATAACATTGGTAAGTTGTTTAAGTCTATATGAACTAGATATAGTAA TTAGTAAAGCAGAAGCAATGGACTGAAAGTAAAGTCAATCATAAGGTTAATATAAGCACATAGAAATCACGCACTTATCA TTCTTCACAACCGAAAGATGATCCGAAACTAGATAAATTCATTTCAGGCGTTCAAATAGCGCAACAAATGGTTGGCAATA GATACCAATAACCGTTGTGGAACAATAATCTTAATTTCTGATCATGATCTGCAACACTTGCCAAAATAATCAACAACCAT CTCATAAGTAACTTTCAAATCCAACAGAGCAAAACTGTGTCTCCATGAAATAAATAATCTAAACAGCTATCAATATTATC CTATTTGATGTAATTCAACCCACAAATTCACCAGTTTTCCTTGTCTTGGGGCCAACCCCATATTCCACCATTTGCTTCAT TAAATCCAGTGCCTCTAAAAGTCCTTCAGACTCTGCAGATTGCACCTAAACCATGCTGTAACTTCCTAAACCAGCAACAC ATCCTGCTCTACCCAGCAACCACTGAAAACATGCTGAAGCTTTAACCGCATTCACCAGTTGATCAGTGAGACAAAGAAGA TAAGAGGGGATCATAAAATGCAAGTTCCACAGTTAAGATGATATCCAATTGTTTGCATCCCAAGTAAACTATTAGATACA GAATGAGACAGTCAGACAGGCATTGCCATCAACCATGAAGATGAGAGGAGAACATGAGCTTGAGGAACTGGAATGCAACC AGGATGTAGAGTCCTCTGTAGGATAGCAAGAGCAAGAGGGAGGGAGGGGATGAGAGTTTTGGAGGTCTAAGAAGAGGTAT TAAAGATTCCAGGATTTCCTTAATCATTTGCATTTTTGTGTTATGGAAAATGAAGAGCCAAAAAAAAAGGATTTGGACTT TGGTAGGATTTAAAGGAAATGAGGAAGTCAGGAATGTTATCCTAGTTCTTTGATTTTGCACTTCTGCTTGAGCTCTAACA GCCAACTCAAGGTTTTGTAACATTGACAGGGGATGAACCGAAGGATATTGGTTCAAAAAGGGTTGGAAGGAAAAAAGAAA TCTTCAGTGCACTGTTGATCAAATCACCGCTATTGATAAATTAATATATTACCGGAGCACCCTGTACCATAACAAGCATG AAACCAGCAGAGGTTTGTCAGAAAGATAATGATATTCATCAATATGGGCAAACAGCTAGGAGGATACATGTGGCATCTTC AGAGATAAATAGATGAGGCAAAAGAACGAAATGCAAAAGATATGGTCAAGCATTGATATAAACTTAACATTTTCTTAAGG AGGAAAATGCAAAAATCACAAGGAATTAGGGGTGTGCAAAAAAACCAAATTAAAAACTAATCCAAACATTTCTGAAAAAG TACAGCCCACTTCTTTTAAAAAACTGATCCAGTCCATGTTTTGTGAACCAAACAATTTGGATGACCATTTCAATCTATGG TTTGGTTATCTCGTTCAACTGATCCCCAAGAAGTGAAGAACGTGTGCATATCTCATTTCATTTCTCAGCACACCTAATTA AATCACTAATAATCCCTAATCAGAACCCTAAATAACGCAGTCTGAACTAAAAAACTGAACTACAGAACAGGTATTTTTAG GTTTGGTTTGGGTTTTTTATAAAACTGGTCCATGCACACCCTTACAAGGAACTGTCAATTACCAATGGTGAAAAAGTATC ACACATAATATAAAATCCCTAAAATGTGCAAACTTATGACATATCCATGACAAAAGTCATGATATCTGCACAAGTGTTGT ACGGTACTCAACTCTAATTTAACAAAAGAACAAAGATATAACTACATTTAAACATTATGATATAATCCATGGTTACTCTC TCTTTCCATTTTCCTTAAAAAAACCTAAGGAAAATTCTTTAACTTACAAAATATGGTTGAATTAAGAGAAGGAAAATGAA GAAAATATTTTAAGATATTACCGCAGTTCAATATCAAGAAATAGCTAGGCTTCATTCAATTCACCGGTAGCGCCTCCTTC TAGATCTTGTAAAGCGAAAACTCCAGAGAAGTAATAGAAAAATGACCAGAACCACTTGTAGAATAATAGCCAACTTCAAA CC
CDS sequence (LotjaGi3g1v0245200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGATAGCTACAAAATTAACCTACACTTTTTTCACTCTTCTCATGGTGAGCAATCTATGGATAATTAGTGCAAGTGA ATGTCCTCCAATGCATAAGAAGAACTCATCCAACTTAGAAGCCAAGAGGAAGAGGTTTGAAAGTTGGCAGAAACAACATG GCCGAAAATATGAGAATCCAGAAGAATGGCAAGTTCGTTTCGACATTTACCAAACAAATGTTGAGTTTATAGAATGCATA AACTCTCAAAACCGCTCCTACCATCTCACAGACAACAAATTTGCAGATCTTACAAATGAAGAGTTCAAAAGAATTTATAT GGGTTATGGAAAAACTAGTTTGAGCTGTAATGCAGGAGCAGGATTATTAAGGTATAATGGACATGGGGATCTTCCGGAAA GCATCGATTGGAGGAAGAAAGGAGCTGTGACTGACATCAAGGATCAAGGCACTTGTGGAAGCTGTTGGGCATTCTCTGCA GTGGCAGCAGTGGAAGGGATACACCAAATAAAATCAGGAAACTTGATATCTCTGTCTGAACAAGAACTCATAGACTGTGA TGTTGGAAATGGTAACCAAGGCTGTGCAGGTGGCTTAATGGAGATAGCCTTCACATTCATAAAAAAGAATGGTGGGCTAA CCACAGAGGAAGAGTATCCTTATAAAGGGAAAGATGGAACCTGTAACATGGAGAAAGCAGCACATCATGCTGTCAGTATA AGTGGCCATGAAAAAGTACCTGCTAGTAATGAGGCCATGCTCAAAGCTGCAGCAGCTAATCAACCTGTCTCTGTTGCTAT TGATGCCGGAGGTTTTCTTTTTCAGCTTTACTCAGGAGGTGTTTTCTTTGGCTTTTGTGGGAAGCAACTCAATCATGCAG TGACGATAGTTGGGTACGGAAGACAAGTAAATGGTCCAAAGTACTGGCTTGTGAAGAATTCATGGGGTGCTGACTGGGGT GAATCTGGTTATATGAAGATACTGCGTGATACTCTGGATAAAGATGGTACTTGTGGCATTGCCATGGATGCTAGCTACCC TACCCTGTCCACAATTAATTACTATTAG
Protein sequence (LotjaGi3g1v0245200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMIATKLTYTFFTLLMVSNLWIISASECPPMHKKNSSNLEAKRKRFESWQKQHGRKYENPEEWQVRFDIYQTNVEFIECI NSQNRSYHLTDNKFADLTNEEFKRIYMGYGKTSLSCNAGAGLLRYNGHGDLPESIDWRKKGAVTDIKDQGTCGSCWAFSA VAAVEGIHQIKSGNLISLSEQELIDCDVGNGNQGCAGGLMEIAFTFIKKNGGLTTEEEYPYKGKDGTCNMEKAAHHAVSI SGHEKVPASNEAMLKAAAANQPVSVAIDAGGFLFQLYSGGVFFGFCGKQLNHAVTIVGYGRQVNGPKYWLVKNSWGADWG ESGYMKILRDTLDKDGTCGIAMDASYPTLSTINYY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 26 | 26 | - | – | |
| Phobius | 1 | 25 | 25 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 25 | 25 | - | – | |
| Phobius | 1 | 6 | 6 | - | – | |
| PANTHER | 6 | 348 | 343 | 8.0E-141 | – | |
| PANTHER | 6 | 348 | 343 | 8.0E-141 | – | |
| TMHMM | 7 | 25 | 19 | - | – | |
| Phobius | 7 | 17 | 11 | - | – | |
| Phobius | 18 | 25 | 8 | - | – | |
| Gene3D | 20 | 350 | 331 | 4.3E-114 | – | |
| Phobius | 26 | 355 | 330 | - | – | |
| SUPERFAMILY | 44 | 346 | 303 | 8.74E-111 | ||
| SMART | 46 | 102 | 57 | 1.3E-20 | ||
| Pfam | 46 | 102 | 57 | 5.9E-14 | ||
| Pfam | 131 | 348 | 218 | 6.6E-79 | ||
| SMART | 131 | 348 | 218 | 8.9E-115 | ||
| CDD | 132 | 347 | 216 | 1.37807E-105 | ||
| PRINTS | 149 | 164 | 16 | 1.6E-10 | ||
| ProSitePatterns | 149 | 160 | 12 | - | ||
| ProSitePatterns | 290 | 300 | 11 | - | ||
| PRINTS | 292 | 302 | 11 | 1.6E-10 | ||
| PRINTS | 308 | 314 | 7 | 1.6E-10 | ||
| ProSitePatterns | 308 | 327 | 20 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Proteolysis | The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. | ||
| Molecular function | Cysteine-type peptidase activity | Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile. |
Expression pattern of LotjaGi3g1v0245200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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