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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0245300 |
| Transcript ID | LotjaGi3g1v0245300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cysteine protease; TAIR: AT1G06260.1 Cysteine proteinases superfamily protein; Swiss-Prot: sp|Q9FJ47|SAG12_ARATH Senescence-specific cysteine protease SAG12; TrEMBL-Plants: tr|G8A001|G8A001_MEDTR Papain family cysteine protease; Found in the gene: LotjaGi3g1v0245300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:40120112..40121888) extracted from Lotus japonicus Gifu genome v1.2.
AGCACAAAAGACATGGCTACATGAAGATATTTATGGAGTTGAAACACAATGTAGTCCCTGAAAAGTGAACAAAGAAGACA TAAGAGAGCACAATGTTTATTTATTTATGAGAACTATGAATGCACATTCCCATTCTCCATTTGCATTGAGAACTAGCCAT GATTATAGCTACAAAATTAACCTACACTTTCCTCACTCTTCTCATGGTGAGCAATCTATTGATAACTAGTAGTGCAAGTG AATGTCCTCCAATGCATAAGCAGAATTCATCCAACTTAGAAGCCATGAGGAAGAGGTTTGAAAGTTGGAGGAAACAACAT GACCGAAGATATGAGAATCCTGAAGAATGGCAAGTCCGTTTCAGCATTTACCAAACAAATCTTGAGTTTATAGAATGCAT AAACTCTCAAAACAACTCCTATTATCTCACAGACAACAAATTTGCAGATCTTACAAATGAAGAGTTTAAAAGTATTTATC TGGGTTATGGAAAAACTAGGTTGAGTTCAAATGCAGGAGCAGGATTATTCAGGTATCATGGACACGGGGATCTTCCGGAA AGTGTAGACTGGAGGAAGAAAGGAGCTGTAACTGGCATCAAGGATCAAGGCACTTGTGGTAAAGTTTCTTGCAATATAAG TTTCTTGCACTTATGCTATTATTTTTCTTTATATAACCAACTAAGTAACTTATCAGTAACTTTTTCATCTTGATTTTTCA TATGTCTTGTTAGCCTTCCTCTTGTTACTATATCAATGCAGAGTTAAGTTGCTTAGTGCAAGTTTGGATACATGGTAGAA AATCACAGTGAATTCAAAATCACGGTTGAATGTTGATAGATAAGCAAAAAGGGAAAATTCTTTTGTCCACCATAATTTTT ACTTCACTGTAGTTTTCAACAATGTATTCAATTTCAAACATGCACTTAGTCTGATATTATGGTTTTAACTTCTTTGAAGT TATATCTTCATGCAGGAAGCTGTTGGGCATTCTCTGCAGTGGCAGCAGTGGAAGGGATCCACCAAATAAAATCAGGAAAG TTGATATCTCTGTCTGAACAAGAACTCATAGACTGTGATGTTGGAAATGGTAACCAAGGCTGTGCAGGTGGCTTGATGGA TACGGCCTTCACATTCATAAAAAAGAATGGTGGGCTAACCACAGAGAGAGATTATCCTTATAAAGGGAAAGATGGCACCT GTAATAAGGAAAAAGCAGCACATCATGCTGTCACTATAAGTGGCCACAAAAAAGTACCTGCCAGTAATGAGGCCATGCTC AAAGCTGCAGCAGCTCATCAACCTGTCTCTGTTGGTATTGATGCAGGAGGTTTTTTGTTCCAACTTTATTCAGGAGGAGT TTTCTCTGGCTTTTGTGGGAAGGAACTAAATCATGCAGTGACGGTAGTTGGGTACGGAAGAGAAGTAAATGGTCCAAAGT ATTGGCTTGTGAAGAATTCATGGGGTGCTGACTGGGGCGAAGCTGGTTATATGAAGATACTGCGTGATACTCAGGATAAA GATGGTACTTGTGGCATTGCCATGGTTGCTAGCTACCCTGTCCAAGAATAAGTACTTTTAGTGTGTGTTTCAAAATTTGA AAAGTGATTGTAGCAAGCTTCTAGGAATAACTTTTGTGTAAAGAAGAAATGATTCTGGTAGATTTAACTATGGGTCCAAA ATATGCTGTAAGCTGAATGACATGCTATATGTATGGTTGTACAATGAAAGATGTCATCAATTAATAGTTAGTGACAAGAA TAACACTCTTTACATTA
CDS sequence (LotjaGi3g1v0245300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTATAGCTACAAAATTAACCTACACTTTCCTCACTCTTCTCATGGTGAGCAATCTATTGATAACTAGTAGTGCAAG TGAATGTCCTCCAATGCATAAGCAGAATTCATCCAACTTAGAAGCCATGAGGAAGAGGTTTGAAAGTTGGAGGAAACAAC ATGACCGAAGATATGAGAATCCTGAAGAATGGCAAGTCCGTTTCAGCATTTACCAAACAAATCTTGAGTTTATAGAATGC ATAAACTCTCAAAACAACTCCTATTATCTCACAGACAACAAATTTGCAGATCTTACAAATGAAGAGTTTAAAAGTATTTA TCTGGGTTATGGAAAAACTAGGTTGAGTTCAAATGCAGGAGCAGGATTATTCAGGTATCATGGACACGGGGATCTTCCGG AAAGTGTAGACTGGAGGAAGAAAGGAGCTGTAACTGGCATCAAGGATCAAGGCACTTGTGGAAGCTGTTGGGCATTCTCT GCAGTGGCAGCAGTGGAAGGGATCCACCAAATAAAATCAGGAAAGTTGATATCTCTGTCTGAACAAGAACTCATAGACTG TGATGTTGGAAATGGTAACCAAGGCTGTGCAGGTGGCTTGATGGATACGGCCTTCACATTCATAAAAAAGAATGGTGGGC TAACCACAGAGAGAGATTATCCTTATAAAGGGAAAGATGGCACCTGTAATAAGGAAAAAGCAGCACATCATGCTGTCACT ATAAGTGGCCACAAAAAAGTACCTGCCAGTAATGAGGCCATGCTCAAAGCTGCAGCAGCTCATCAACCTGTCTCTGTTGG TATTGATGCAGGAGGTTTTTTGTTCCAACTTTATTCAGGAGGAGTTTTCTCTGGCTTTTGTGGGAAGGAACTAAATCATG CAGTGACGGTAGTTGGGTACGGAAGAGAAGTAAATGGTCCAAAGTATTGGCTTGTGAAGAATTCATGGGGTGCTGACTGG GGCGAAGCTGGTTATATGAAGATACTGCGTGATACTCAGGATAAAGATGGTACTTGTGGCATTGCCATGGTTGCTAGCTA CCCTGTCCAAGAATAA
Protein sequence (LotjaGi3g1v0245300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIIATKLTYTFLTLLMVSNLLITSSASECPPMHKQNSSNLEAMRKRFESWRKQHDRRYENPEEWQVRFSIYQTNLEFIEC INSQNNSYYLTDNKFADLTNEEFKSIYLGYGKTRLSSNAGAGLFRYHGHGDLPESVDWRKKGAVTGIKDQGTCGSCWAFS AVAAVEGIHQIKSGKLISLSEQELIDCDVGNGNQGCAGGLMDTAFTFIKKNGGLTTERDYPYKGKDGTCNKEKAAHHAVT ISGHKKVPASNEAMLKAAAAHQPVSVGIDAGGFLFQLYSGGVFSGFCGKELNHAVTVVGYGREVNGPKYWLVKNSWGADW GEAGYMKILRDTQDKDGTCGIAMVASYPVQE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 26 | 26 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 28 | 28 | - | – | |
| Phobius | 1 | 10 | 10 | - | – | |
| Phobius | 1 | 26 | 26 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 26 | 26 | - | – | |
| PANTHER | 8 | 349 | 342 | 1.0E-141 | – | |
| PANTHER | 8 | 349 | 342 | 1.0E-141 | – | |
| Phobius | 11 | 22 | 12 | - | – | |
| Gene3D | 18 | 350 | 333 | 2.7E-116 | – | |
| Phobius | 23 | 26 | 4 | - | – | |
| Phobius | 27 | 351 | 325 | - | – | |
| SUPERFAMILY | 43 | 349 | 307 | 2.61E-113 | ||
| SMART | 47 | 103 | 57 | 8.3E-20 | ||
| Pfam | 47 | 103 | 57 | 4.7E-13 | ||
| Pfam | 132 | 349 | 218 | 8.6E-80 | ||
| SMART | 132 | 349 | 218 | 1.8E-117 | ||
| CDD | 133 | 348 | 216 | 6.14265E-109 | ||
| PRINTS | 150 | 165 | 16 | 1.0E-10 | ||
| ProSitePatterns | 150 | 161 | 12 | - | ||
| ProSitePatterns | 291 | 301 | 11 | - | ||
| PRINTS | 293 | 303 | 11 | 1.0E-10 | ||
| PRINTS | 309 | 315 | 7 | 1.0E-10 | ||
| ProSitePatterns | 309 | 328 | 20 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Proteolysis | The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. | ||
| Molecular function | Cysteine-type peptidase activity | Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile. |
Expression pattern of LotjaGi3g1v0245300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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