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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0249300 |
| Transcript ID | LotjaGi3g1v0249300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cysteine protease, putative; TAIR: AT5G45890.1 senescence-associated gene 12; Swiss-Prot: sp|A2XQE8|SAG39_ORYSI Senescence-specific cysteine protease SAG39; TrEMBL-Plants: tr|K4MQ82|K4MQ82_LOTJA Cysteine proteinase; Found in the gene: LotjaGi3g1v0249300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:41404768..41405940) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCTACCAAAAATCAATTCTATCAAGTTTCATTTGCATTAGTTCTCTGTTTGGGATTGTGGGCTTTTCAAGTCTCATC TCGCACTCTCCAAGATGCTTCTATGCAGGAGAGGCATGAGCAATGGATGGCTCGCTATGGCAGGGTCTATAAGGATCTCC AAGAAAAGGAAAAGCGTTTCAGCATATTTAAGGAAAATGTCAACTACATTGAAGCTTCCAACAATGCTGGAAATAAACCT TACAAGCTAGGTGTTAATCAGTTTGCAGATCTCACCAATGAGGAGTTCATAGCAACTAGAAACAAATTCAAAGGACACAT GAGCTCCTCAATCACAAGGACAACCACTTTTAAGTACGAAAATGTGACTGCGCCTTCCACTGTGGATTGGAGGCAGGAAG GAGCAGTGACACCTGTGAAGAACCAAGGCACTTGTGGTAAGTGTTTGATAATTCATGCAAATTGAATCAAATATGTCAAG ATTGAATTGTCAACTAAGTCTAGTTTTAATTACCTTGCAGGATGTTGTTGGGCCTTTTCTGCTGTTGCCGCGACAGAAGG AATTCATAAATTGAGTACTGGGAATTTGGTTTCTTTATCTGAACAAGAACTTGTTGATTGTGACACAAGTGGTGCAGACC AAGGTTGCCAGGGTGGTCTTATGGATGATGCTTTCAAATTCATCATCCAAAATGGTGGACTCAACACTGAAGCTCAATAC CCCTATCAGGGGGTTGATGGAACATGCAATACAAATGAAGAAGCTACCCATGTTGCTACCATTACTGGGTATGAGGATGT CCCTAGCAACAATGAGCAGGCACTGCAACAAGCTGTGGCTAATCAACCAATTTCTATTGCAATTGATGCTAGTGGTTCTG ACTTTCAAAACTACCAAAGTGGTGTCTTCACTGGTAGCTGTGGAACTCAGTTGGACCATGGTGTTGCTGTTGTGGGTTAT GGTGTTAGTGATGATGGAACAAAGTATTGGTTAGTTAAGAACTCATGGGGAGCAGATTGGGGTGAAGAAGGTTACATTAG AATGCAAAGGGATGTGGATGCCCCAGAAGGACTCTGTGGCTTAGCTATGCAACCATCTTACCCAACTGCATAATTACAAA AAATTGATACCATTTGCAATTCTACTATAATTTCGTTTTAAGTTCGAATTCAC
CDS sequence (LotjaGi3g1v0249300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTACCAAAAATCAATTCTATCAAGTTTCATTTGCATTAGTTCTCTGTTTGGGATTGTGGGCTTTTCAAGTCTCATC TCGCACTCTCCAAGATGCTTCTATGCAGGAGAGGCATGAGCAATGGATGGCTCGCTATGGCAGGGTCTATAAGGATCTCC AAGAAAAGGAAAAGCGTTTCAGCATATTTAAGGAAAATGTCAACTACATTGAAGCTTCCAACAATGCTGGAAATAAACCT TACAAGCTAGGTGTTAATCAGTTTGCAGATCTCACCAATGAGGAGTTCATAGCAACTAGAAACAAATTCAAAGGACACAT GAGCTCCTCAATCACAAGGACAACCACTTTTAAGTACGAAAATGTGACTGCGCCTTCCACTGTGGATTGGAGGCAGGAAG GAGCAGTGACACCTGTGAAGAACCAAGGCACTTGTGGATGTTGTTGGGCCTTTTCTGCTGTTGCCGCGACAGAAGGAATT CATAAATTGAGTACTGGGAATTTGGTTTCTTTATCTGAACAAGAACTTGTTGATTGTGACACAAGTGGTGCAGACCAAGG TTGCCAGGGTGGTCTTATGGATGATGCTTTCAAATTCATCATCCAAAATGGTGGACTCAACACTGAAGCTCAATACCCCT ATCAGGGGGTTGATGGAACATGCAATACAAATGAAGAAGCTACCCATGTTGCTACCATTACTGGGTATGAGGATGTCCCT AGCAACAATGAGCAGGCACTGCAACAAGCTGTGGCTAATCAACCAATTTCTATTGCAATTGATGCTAGTGGTTCTGACTT TCAAAACTACCAAAGTGGTGTCTTCACTGGTAGCTGTGGAACTCAGTTGGACCATGGTGTTGCTGTTGTGGGTTATGGTG TTAGTGATGATGGAACAAAGTATTGGTTAGTTAAGAACTCATGGGGAGCAGATTGGGGTGAAGAAGGTTACATTAGAATG CAAAGGGATGTGGATGCCCCAGAAGGACTCTGTGGCTTAGCTATGCAACCATCTTACCCAACTGCATAA
Protein sequence (LotjaGi3g1v0249300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATKNQFYQVSFALVLCLGLWAFQVSSRTLQDASMQERHEQWMARYGRVYKDLQEKEKRFSIFKENVNYIEASNNAGNKP YKLGVNQFADLTNEEFIATRNKFKGHMSSSITRTTTFKYENVTAPSTVDWRQEGAVTPVKNQGTCGCCWAFSAVAATEGI HKLSTGNLVSLSEQELVDCDTSGADQGCQGGLMDDAFKFIIQNGGLNTEAQYPYQGVDGTCNTNEEATHVATITGYEDVP SNNEQALQQAVANQPISIAIDASGSDFQNYQSGVFTGSCGTQLDHGVAVVGYGVSDDGTKYWLVKNSWGADWGEEGYIRM QRDVDAPEGLCGLAMQPSYPTA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 27 | 27 | - | – | |
| SignalP_EUK | 1 | 22 | 22 | - | – | |
| Phobius | 1 | 11 | 11 | - | – | |
| TMHMM | 7 | 25 | 19 | - | – | |
| Phobius | 12 | 23 | 12 | - | – | |
| PANTHER | 13 | 341 | 329 | 1.4E-149 | – | |
| PANTHER | 13 | 341 | 329 | 1.4E-149 | – | |
| Gene3D | 22 | 342 | 321 | 1.6E-119 | – | |
| Phobius | 24 | 27 | 4 | - | – | |
| Phobius | 28 | 342 | 315 | - | – | |
| SUPERFAMILY | 31 | 341 | 311 | 1.39E-113 | ||
| SMART | 39 | 96 | 58 | 1.7E-27 | ||
| Pfam | 39 | 96 | 58 | 8.8E-19 | ||
| SMART | 124 | 341 | 218 | 7.2E-126 | ||
| Pfam | 125 | 341 | 217 | 1.6E-82 | ||
| CDD | 125 | 340 | 216 | 1.40821E-112 | ||
| PRINTS | 142 | 157 | 16 | 1.3E-9 | ||
| ProSitePatterns | 142 | 153 | 12 | - | ||
| ProSitePatterns | 283 | 293 | 11 | - | ||
| PRINTS | 285 | 295 | 11 | 1.3E-9 | ||
| PRINTS | 301 | 307 | 7 | 1.3E-9 | ||
| ProSitePatterns | 301 | 320 | 20 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Proteolysis | The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. | ||
| Molecular function | Cysteine-type peptidase activity | Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile. |
Expression pattern of LotjaGi3g1v0249300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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