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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0253500 |
| Transcript ID | LotjaGi3g1v0253500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | U6 snRNA-associated Sm-like protein; TAIR: AT2G43810.1 Small nuclear ribonucleoprotein family protein; Swiss-Prot: sp|O22823|LSM6B_ARATH Sm-like protein LSM36B; TrEMBL-Plants: tr|I3SM22|I3SM22_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0253500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:42752935..42754574) extracted from Lotus japonicus Gifu genome v1.2.
TCTTCAACAAAGAAAATGAGTGGAGCAGAGAAAGGTTCCGGAACCACGAAAACCCCTGCAGATTTCCTCAAATCCATTCG CGGAAGGCCTGTTGTCGTGAAGCTCAATTCTGGTGTCGACTATCGAGGTTCGTCTCAATTCTAGGTTTTTCTTAATTCTA TAGTAGTATGTTTGGTTTGATGGAAAATAATGGGATGGAATTGAATTGTTATGTGCTCCATTATTTGGATCCTTAGAATA GGAAGTAATGAAATTGAATACAATTTCCATCTAATACTGCACTTTTGTTTCCAATTTTGGGGGATGATATGAAACTCGCT TTCCCCCAATTCCATTGTTAAAATACCTTAAATTTTATTATTTATTGTGTTTTTGTAATTGTTCTGCATTCTTGAGGATA GTAGAAATTAGTCAAAGATTGTCATAACCCAGTAAAAGTCGTCGTCCATTAAGATGAAATTAGACAGAAAATCTTGTAGA AGGAATATGAAAAGAATCAATATTTCATATTATCTTTGAGTTTACAGCGTAATGCTCTTATATAGTAGAGCAGTGTAATT AGCTTCTAAGAGTGTAGTAGAGCAGTGAAGTTAGCATCTAAGAAGTTAGCTTAAGAGATATGCTTTAACTAACTATTAGA AACTAATCAATAACAGAAACTAATAGTTCTAACAGGCTAACAGCATCTATGATAATATGTTAATTTACTGATCATCACGA AGGACTATTAATTTCGTTGCATGTCATGTTTTGGTTTGTTTTCCGTTACATATATATATTGGGTGTTTTTGGAATTGGAT TCTGAGCCCGAATTTCGGTGTTTATTCATATAAATTTGAGTTCAAGATAAATTTACATTGCATGGCGTGTATTTAGTCAT ATATACTGGGCTTTTGGGACACCATATTTTCTTGTGACCTACCTATATATATTAGTTTGCATTATTTACAGATGGATGAT ATATGAAACTCAGTAAAGTGAACAATGTACCTTTTGTGTGAGTGAGGAAAATGATTTGTTTGCGCAAGTGGCTCTAGTAG TGTTGATATTCATGTTGTGTTTTTTGCTTTGTACGAAAGGAACTTGTGTCGTGTTAACTAACTTGAAACTTGTAAAGGCT CTAATGCCCATACTCCATAGGGGTGAAATAGTTGGAGGTCATATTTACGGAAAAGAAACAGTTGAAGGTTGTAGTTAGTA TTTCTGAAATATGAGAGTAGTTTAAAAAGGATTGAACATTGAAGTGAGTAAACAAGGGACAGCTATTGAAATTACAACTA TACATTTTTTTCAAGTTCATATTTTTCGACTCTACATTATGGATTTGCATATTATCTCAGGGGAACATGTAATTTTCATG TGCTTCTATGTGAACATGGTGTTATCTTGCAGGTATCCTAGCTTGTCTAGATGGCTATATGAATATTGCAATGGAACAGA CAGAGGAATATGTTAATGGACAGCTGAAGAACAAGTATGGTGATGCATTCATTCGAGGGAATAATGGTACATAATGCTTG AAATATTATGTACTTGATTCACTGTTGATATTTGATTGCAGAAATAATTGGAAATTTATTTTCTTTGATGCAGTTCTGTA CATCAGTACCTCAAAGAGGACTCTAGCAGAAGGGGCTTAG
CDS sequence (LotjaGi3g1v0253500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTGGAGCAGAGAAAGGTTCCGGAACCACGAAAACCCCTGCAGATTTCCTCAAATCCATTCGCGGAAGGCCTGTTGT CGTGAAGCTCAATTCTGGTGTCGACTATCGAGGTATCCTAGCTTGTCTAGATGGCTATATGAATATTGCAATGGAACAGA CAGAGGAATATGTTAATGGACAGCTGAAGAACAAGTATGGTGATGCATTCATTCGAGGGAATAATGTTCTGTACATCAGT ACCTCAAAGAGGACTCTAGCAGAAGGGGCTTAG
Protein sequence (LotjaGi3g1v0253500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSGAEKGSGTTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYIS TSKRTLAEGA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 87 | 87 | 5.6E-58 | – | |
| PANTHER | 1 | 87 | 87 | 5.6E-58 | ||
| Gene3D | 4 | 84 | 81 | 1.3E-31 | – | |
| PIRSF | 6 | 89 | 84 | 9.4E-23 | ||
| CDD | 13 | 80 | 68 | 9.03476E-45 | – | |
| SUPERFAMILY | 13 | 81 | 69 | 4.53E-20 | ||
| Pfam | 16 | 80 | 65 | 1.5E-18 | ||
| SMART | 16 | 81 | 66 | 7.8E-21 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | MRNA splicing, via spliceosome | The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced. | ||
| Cellular component | Small nucleolar ribonucleoprotein complex | A ribonucleoprotein complex that contains an RNA molecule of the small nucleolar RNA (snoRNA) family and associated proteins. Most are involved in a step of processing of rRNA: cleavage, 2'-O-methylation, or pseudouridylation. The majority, though not all, fall into one of two classes, box C/D type or box H/ACA type. |
Expression pattern of LotjaGi3g1v0253500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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