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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0285400 |
| Transcript ID | LotjaGi3g1v0285400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING/U-box superfamily protein; TAIR: AT3G46620.1 zinc finger (C3HC4-type RING finger) family protein; Swiss-Prot: sp|Q9SNB6|RDUF1_ARATH E3 ubiquitin-protein ligase RDUF1; TrEMBL-Plants: tr|Q2HS43|Q2HS43_MEDTR Zinc finger, C3HC4 type (RING finger) protein, putative; Found in the gene: LotjaGi3g1v0285400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:57609027..57611317) extracted from Lotus japonicus Gifu genome v1.2.
AAAATTAATTAATAGGACACCTAAAATGAATTAATGAAAGATGAGAAATTGCCATGTATTTTCCAGTAGAGCAAGAGCGT AGACCACAGGGTAAGGTGTGTGGTGGTATTACTGACTACTGTAGTTCAAAACGCGTTACCTTCTAAATCCTTAAATGGAC GCTCTCTCTTCCACAACCCTTTACCAACAACATTCATTCATTCATTCATTTTCTCCAACCCAACTCGTTCAACTCAACTC GTTCCGAACAAAATGAACTCGGACACGCAACCCGCTACGACGTCGTCGTATTGGTGTTACAGTTGCAACCGCTTCGTTCA CCTCCTCGACCACAACGACGTCGTTTGCCCCCACTGCCAAAGCGGCTTCGTCGAAGAGATCCACGCCGGCCACTCCCCGG CGGTCTCCCTCTTCGCCGACGGCATCCACGCTTCCCGCCGACAAGGCTTCCGCCGTAGACGCCGCAACGCCGGCAGCCGC TCGCCGTTTAACCCGGTGATTGTGCTCCGCGGACCCGGCGACGACGCTGCCGGCGCCGACAACGACGGAAGCAGCTTCGA GCTGTTCTATGATGATGGCGACGGCACCGGTCTCCGACCCCTGCCGCCGACCATGTCAGAGCTTTTGCTTGGCTCGGGAT TTGACCGGTTGCTGGATCAATTCTCCCAGATCGAGATTAATGGATTTGGACGGCCAGAGAATCCGCCGGCGTCGAAGGCG GCGATTGAGTCAATGCCGACGGTGGAGATCACGGAGGCGGAGGTGCAGGCGGAGACGCACTGTGCTGTGTGCAAAGACGC GTTTGAGATGGGTTCGGAGGCGCGTGAGATGCCGTGCAAGCATCTCTACCATTCGGATTGTATTCTCCCGTGGCTTTCCA CGAGGAACTCGTGCCCGGTGTGCCGCCACGAGCTGCCGTCAGATCAAGGCCAAGGCCAAGGTCAAATCTCCGGTCAGATC GACGAAGAAGCGGTGGGGTTGACCATATGGAGGTTGCCGGGAGGCGGGTTCGCCGTCGGGAGATTCTCTGGCGGGAGAAG AGCCGGTGAGAGCCATTTCCCGGTGGTGTACACGGAGGTGGATGGCGGCGGCGGTGGTGGTTCTAGTAGAATCTCGTTTT CAGTGGGAAGCAGCAGAGTTAGGGAGAGTCGTGGGTTTCGCAGAGTTTTTCGCAATTTCGTGTCTTTCTTTGGGAATAGG AGTCGTAGCATTTCGAATTCGTTGTTCAGTAGAAGCACTCGGAGAAGAAGCACAACTTGGGTCAATGAAGGTTGATTTGA TTGAGTTATTTTTAGAAAGGAAACTATCAATTTCTGTTTGAGATTCAAATTCTTACTGTAAATAGCATAGAATTGGGTAC TTTGTTAGAACAAGGAGGTTTAGTTTTTCCCTGCCCTTGGGGTTTGAGAAATATTGAGATGAAGATTGTTCTTGCTGTTG AACATTCAATTGGGGAAAAGACCATGCTTATTCCCTTGCTCATGTTGTTAATTAGTTACTTATTTACTTGATTTGATTAA TGTTGATACAATTATGTTAGTCATGTAATCTTTCTGAGATAAGGTCTAATGTGAAATGTGCCAATTTGATGACACTGTTT GAAGGGGTGAAGTGTTATGTTAGGTGTTTGTTGCAAGGTGAATGGACACCAGCAAAATGACAGAATAATTGTTCTTCAGA TCATTGTGCTCAAGTGATCTAAAATATTCTGAATTCATCACGACAAAAAGAATGCCAAATCTCTATGTCCATAACTTTTG GTTCTAGATGGGGCTTATTGGGATTATGGTTTTGGGTTAGATGATCATGGCACGGCATCACCACATAATCACATATACCA TGCGCTCATGATTTACCTACTTGCTTAATCATGATGCAGGTTATTTTCCTTTTCATTCCTGTTACCTTTAGGCTCTGATA TGTATGGTTGTGCTTGATTATGTACTAGCTGTGATTAACTCATTGGCAGTGCTGTCTGTGACTGTGGATAAAGGTTTCAC ACTTTCACTTCTACCATGTCCTTTTTGATTTTACAGCTGAAGCCATAACCGCATCCTTTACTTTCCCAAAGGATTTTACT GTTGTTGGCACTGGTAGAACTAGAACTTTCCCTCTGAATATTGAATCTGACAACTGTCTCCCACTCGAACTTGAGTGGTC AAGTCTGAATTTTGGCACGCCTGCTTCAAGCGTTTCAGCCAACTAAAGTTGAACCTTTCTCTACCACTATCCTCTGGCAT ATTTTTTTGGCAATCAGTATGTTACCTTTGACCGACAAAGCAATTTTTTAA
CDS sequence (LotjaGi3g1v0285400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACTCGGACACGCAACCCGCTACGACGTCGTCGTATTGGTGTTACAGTTGCAACCGCTTCGTTCACCTCCTCGACCA CAACGACGTCGTTTGCCCCCACTGCCAAAGCGGCTTCGTCGAAGAGATCCACGCCGGCCACTCCCCGGCGGTCTCCCTCT TCGCCGACGGCATCCACGCTTCCCGCCGACAAGGCTTCCGCCGTAGACGCCGCAACGCCGGCAGCCGCTCGCCGTTTAAC CCGGTGATTGTGCTCCGCGGACCCGGCGACGACGCTGCCGGCGCCGACAACGACGGAAGCAGCTTCGAGCTGTTCTATGA TGATGGCGACGGCACCGGTCTCCGACCCCTGCCGCCGACCATGTCAGAGCTTTTGCTTGGCTCGGGATTTGACCGGTTGC TGGATCAATTCTCCCAGATCGAGATTAATGGATTTGGACGGCCAGAGAATCCGCCGGCGTCGAAGGCGGCGATTGAGTCA ATGCCGACGGTGGAGATCACGGAGGCGGAGGTGCAGGCGGAGACGCACTGTGCTGTGTGCAAAGACGCGTTTGAGATGGG TTCGGAGGCGCGTGAGATGCCGTGCAAGCATCTCTACCATTCGGATTGTATTCTCCCGTGGCTTTCCACGAGGAACTCGT GCCCGGTGTGCCGCCACGAGCTGCCGTCAGATCAAGGCCAAGGCCAAGGTCAAATCTCCGGTCAGATCGACGAAGAAGCG GTGGGGTTGACCATATGGAGGTTGCCGGGAGGCGGGTTCGCCGTCGGGAGATTCTCTGGCGGGAGAAGAGCCGGTGAGAG CCATTTCCCGGTGGTGTACACGGAGGTGGATGGCGGCGGCGGTGGTGGTTCTAGTAGAATCTCGTTTTCAGTGGGAAGCA GCAGAGTTAGGGAGAGTCGTGGGTTTCGCAGAGTTTTTCGCAATTTCGTGTCTTTCTTTGGGAATAGGAGTCGTAGCATT TCGAATTCGTTGTTCAGTAGAAGCACTCGGAGAAGAAGCACAACTTGGGTCAATGAAGGTTGA
Protein sequence (LotjaGi3g1v0285400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNSDTQPATTSSYWCYSCNRFVHLLDHNDVVCPHCQSGFVEEIHAGHSPAVSLFADGIHASRRQGFRRRRRNAGSRSPFN PVIVLRGPGDDAAGADNDGSSFELFYDDGDGTGLRPLPPTMSELLLGSGFDRLLDQFSQIEINGFGRPENPPASKAAIES MPTVEITEAEVQAETHCAVCKDAFEMGSEAREMPCKHLYHSDCILPWLSTRNSCPVCRHELPSDQGQGQGQISGQIDEEA VGLTIWRLPGGGFAVGRFSGGRRAGESHFPVVYTEVDGGGGGGSSRISFSVGSSRVRESRGFRRVFRNFVSFFGNRSRSI SNSLFSRSTRRRSTTWVNEG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 7 | 307 | 301 | 9.2E-135 | – | |
| PANTHER | 7 | 307 | 301 | 9.2E-135 | – | |
| Pfam | 12 | 43 | 32 | 4.2E-14 | ||
| Gene3D | 144 | 224 | 81 | 3.5E-21 | ||
| SUPERFAMILY | 157 | 224 | 68 | 2.43E-21 | – | |
| Pfam | 176 | 218 | 43 | 2.6E-11 | ||
| SMART | 177 | 217 | 41 | 9.0E-8 | ||
| CDD | 177 | 221 | 45 | 1.58287E-23 | – | |
| ProSiteProfiles | 177 | 218 | 42 | 12.224 | ||
| Pfam | 241 | 327 | 87 | 2.4E-30 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ubiquitin protein ligase activity | Catalysis of the transfer of ubiquitin to a substrate protein via the reaction X-ubiquitin + S -> X + S-ubiquitin, where X is either an E2 or E3 enzyme, the X-ubiquitin linkage is a thioester bond, and the S-ubiquitin linkage is an amide bond: an isopeptide bond between the C-terminal glycine of ubiquitin and the epsilon-amino group of lysine residues in the substrate or, in the linear extension of ubiquitin chains, a peptide bond the between the C-terminal glycine and N-terminal methionine of ubiquitin residues. |
Expression pattern of LotjaGi3g1v0285400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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