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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0364600 |
| Transcript ID | LotjaGi3g1v0364600.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING/U-box superfamily protein; TAIR: AT5G60250.1 zinc finger (C3HC4-type RING finger) family protein; Swiss-Prot: sp|P0CE10|DEAHB_ARATH ATP-dependent RNA helicase DEAH11, chloroplastic; TrEMBL-Plants: tr|I1LKC6|I1LKC6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0364600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:75030850..75036964) extracted from Lotus japonicus Gifu genome v1.2.
GGTCAATAGAAGATTTTTCATTCCATGTGGGTTGAACCCAGAACAAATACAAGGCAAGGCCCAAAACAAACAGCTAATGT GGCGTAGCTAAACAATATGACAAAAAACACGTAGCTCGCTTAGCTGTCTCGGGTAGACACATACACCGAGTAAAAAGCCA AAAGATAGAGTCAAAAGCAAAAGGCTCTGCAAGAGAGAAACACCTAATAGTTTCTAGGGACAGGTACCTTAAGTACAATA ACTAAAGCATGTGTTCCTTTTCTTGAAATAGACCAAAGAAAGTTCACAAGGAAACCAGATCCATAAAGCTAACATCTGGT ACTCAAGGAGAACCCGTGAGGGAAAATAAACTTGAGTGGAAAATCAGTTCTTTGGCTAGAGAGCTACTAAGAATTCTGAT CCTTGTTTAACAAATGGTGTAATTCAGGAGGAGGATTCCACAGCCATAAAGGTGGGAGATTGGCAGATCCTGCAAGCTGG GCAACAGTGTGGGCTACAACGTTTCCCTCTCTGGGAGTCCAGGTAAAAAACCAGAATGGAAATCTTCTCTTCCAAGTAGA AATGTCATGCAAAATATTTGAGATTTCTTTGATCTGTCTTTGACCATTGCAGGCTTCTATCAGGGATAAACAATCAGATT CAAAATGGACCTTTTGCAGCTCAAGATTTTGTGCAATTTGGACTGCCTCTCTTAAAATGATGGCTTCTGCCAAGAGGGGT TTATTGGCATACAATTTCTTTGAAGCACCACAAATAATTGAGCCAAGCTCATCTCTAAAAACATAGGCTCCAAAAGCTTT CCTTGTGTGTTGTGAAAAAGCGGCATCAGTATTGCATTTGAGAAAATGTGGTGGAGGTTTTTTCCAATTTTTGTCTGCTG CAGATTGTCTATTAGTCGGTTGGGAGTGGTTTTCAGAGTGGAATGCAGTCAAAAATTCACTGTGAAGAGAAGAAGCATTG AGTAGACATCTTGCAGGATTGGGATTCACCCCTTCAAAGCAAGCTTTATTCCTCATCTTCCATATTTCCCAAAGGATTAT GCACAAGAGTGCAATAGAATGTTCAGCTCCTGGATCACGTTCATAAAGAATTTTAAAACTTTGCTCTAACCAAGAAGAGA AGAGGACATTTTGTGAATTTTGAAAAATCAGAGATAGGGGACTCCCAAACCAAACTGGCCTAGTCCAATCACACCCTAAG AAGGTATGGTTTATGTCTTCTATTCCAATCCCACAAATTGAACAAGAATCATCTCTACCCAAATTTCGTTTTTTCAGGTT AAGTTTCACTGGGAGAGCTCCGCTACAAGTCTTCCATACAAAAGTCTTAATCTTTTGTGGGATCCTTGCCCCCCAAATTG TTTGCCAGAGGAACTTGGAGGGGTGAGAAGAAGAGGAGGCCATGAGGGACTGTGACGCAGCATTGTTAGCCACCCTATAA CCTGACTTCTTTTTTGAAAAGTATATTTTATTCTTTTATTTTTGTCAAAGTAGAATATATCATTGATGCGGGCCAGGCCC AAAAAGAGTAACACAAGGCAAGCTTAAAACAAACCAGCCCCTTTGAAAAAAAAAAAAAAACCAGCCCCCAACTACTAACT ACTAAGTCCAAAAGAGGGCTTTACTTTTTTTTCCTAACTTTTTCTAACATTTAATTAGTTGAAATTCATATGAGATCATA TGATATCCGCTAGAAATGGTTCATACTTCAAATTGAATGGAATCTTCTTGAATTTCGACCCATTAATTAAAGTGTTAAAA TGAGTGTTAATAAAAGAGGGTTTACTAACTTTCTCACTCCTCTCATGTAAGTATAGCACTTGAACTTTTAAGCCCATCCA ATTTTCTCATCAAATACATGCATATGATGTTTGCTGGTTGGATTTAGTCAATTTTGAAGGGAAAAAAAAGGAACAAGGAA AAATGATTAATTTGATGGTACAGTCAAAAATACATGTGCAAACCTATGTGGATTAGTGATCAAGTAAATTTTCCATCACA TAAGCTTTATGACATCATAAAGATGATTTTAAATTATATAATTTTTTTCAAGTACAAAAATGACAACACACCACACACAT ATTAATCTCACACAGAGACATACTGAAATAAGTTAAAAACACAAGTAATTCATTCATTTGCTAATATTTAAATTCCAATT CTACAAAAATAACTCGTTTCCATAAACTCATTGGATAAAGATCTTTTAACACTTCATTTACATTAATTAGTGAAAGAATA GAAACAAATAAATGATGTGTAATGTAATAAGATAAAAAGAAAAAAAATGAATAAAATTTAGAAAAATGAGAAAATTTGAG CAAACCTATTTAAGCGCCTTCTCAGTTCTCACGACTTACAGTGAAATGGACGACATGGACGAAACCCAAGACTTGCAGCG GTTACTATCGGAGCACCGCCGTGAACTCACCGCCGCGGAAGCCATGGAATCCGATCTCGACTTTGCATACCGTATCCAGT TACAAGAAGCCCTCGCCGCCTCCGTCGCCGCCCTCCCCTCTTCCTCCTCCTCCACCGCCATCATCCCGGAAGAGCCCGCC TTCGACGACGCCGTTCTGAACGCCACGTCATTACAGTTAGAGGAGCTAGCGAGGATGGAGCAGGAGATGAAGGACCTGGA GCAGAGCAAGGCGGAGATGCAGCACGCGAGGGAAGACCTCGTCCGTCGGATTCACGACCAGAAGATGGCCTCGGAGATTC TCGCGATCCCTGAGAGAGATTGGGAGGAGTGGGGTGACAATTACGAGAAGGCGTTCGGCGAGGGTTGCTCCTCCGGGGAC CCTGGTGCGGTGTTTAGGGTTTATTTCAAGGGTTTGGTGAGTGAGGATTTTGTGAATGGTGAGAGTGAGAGAGTGGTTTT GGGTGGGATTGGTATTGCGATTTGTGATGAGGCTGATAATGTGTTGCTGGAAGTTTCTAAGCCCCTTCTTGGTACTGAAA CCAGTAAGAAAATTTCAGAGGCTAAGGCTCTGATTGAAGCTTTCAATGCTGCCATTTTCATGGACCTGAAGCGTGTTGTT TACTATTGTGATTACCCCCCTCTCTTGCAACATGTGAGTCCCCTCGCTCGCTTTCACTGCTTTAGGGAGCATGCATGTGA TACATTTCATACACCCTTATAGTCACTGTAGAGTGTGAAGTTGATTATCATAAGTTCATAACTGTTGAGTGTGTGTGTGT GTGTTTAGATAGCGGTTGAGCTTTCATCCCAATTCAAGGATTGTTCAACTTTTGCCTTATAGTTAGGGCTAATGTTCGTT TGCGCTGATACTAATCGATATCTGAACAGTCTGAATGGTTGAGATTTAATCAACACTATAGTTTGGGATACAAGTACAAG TATATGATCCCAATCACAAGTTATGGTATCTTGCGTGATTCTCGAACCCTTTATAATATTGTTACCGTATGATTAGTTCT TTTGCTGAAAAAATAGATAGGGCACTCAGTGATTAGTACTGCATGCATGAGTGCTGAAAAAGTTGTTAATACAGTAGGTT CATTCCTGTGAAAGCAGTTATTAGGAAAAAGCTTGTGAAAAGTGTGCTTATCTCTGAAATGATCAGCCTTTAGATTTTTG TGGGTTAAGATAAATTAATTCATTGTTTGATATGCTTTTACTTGCTCATTTTAGAACCAAATCATGTTAAATAAGCATTA TCCTGCATTTATATAGTGTATCAAAAAAAAATCAGACTCCTCTCTGTGATAGTACTAGTTAGTCAAGCTTAGTTGTGCAA TCATAACGGATAGTTAGGATTTAATTGAAGTAATCGTATGGTCTACTCACAGTTACTGTCTGATGTGATACTTACCTGGT TTGAATTATGCATTATAAATTATTGACACACTCACAGAACAATCTTCTCCCAGATCCAAACACAATAGCCAAGCGAGGAT TATGTGCAAGTTGGATCCTCTCCAGCCAAAATTCTCCCCATATATCTCATGCCAAATCCTAGCCATAGGTTTATGTGTGT GTTCACCATGTGGCTTAAATTATGTTTTGATGCATGAGGATATGATAATGTCACACTTTTATGGAGGATTTTAATATCTT GTTTTGCTGGTCAGTTAAGTGGAAAGTGGCCTGTGAATCAGCAGAAGCTTGCTAGACTAGTTAATGAAGTGTATCTTCTT CAAAGAAAATTTACATACTGCAATCCAAGGCTTGTGGCGAGACATGATCTCAAGTATGCATTTAAGCTGGCAAGAGATGC AATTGTTTCTCAGTCCACAAGGTCTGCAGAAGCTGGCAGTAGTACAAAGAGTCTGAAAGAAACTTGTGTCATTTGTTTGG AGGATACTGATATCAATCAATTTTTTTCTGTTGATGGATGTCAACACCGGTATTGCTTTTCTTGTGTGAAACAACATGTG GAGGTGAAGCTGCTCCAGGGAATGGTGCCAAAATGCCCTCATGAGGGGTGCAAAAATGAGCTTCTAGCTGAAAGCTGCCG GAAATTCTTGCCTCATAAACTGATTGAGACCATGCAGCAACGAAAAGTAGAAGCTTCAATTCCCGTTACTGAGAAAATCT ACTGTCCTTATCCAAGATGCTCTGCATTAATGTCAAAAACTGAGGTTTTAGAGTACTCCAAAAATGTTATTGGTGCTCAA AAGCAATGTATAAAATGTCGTGGTTTTTTCTGTTTCATCTGCAAGGTCCCTTGGCATAATGGTATGACATGTCATGCTTA TAAAAAGTTGAATCCTAACCCTCCTGCTGAAGACCTGAAGCTGAAGTCTCTGGCAACAAGGAGTCTTTGGCGGCAGTGTG TGAAGTGTAACCATATGATTGAACTTGCTGAAGGTTGCTATCACATGACTTGCAGGTACGCTAGTAATAACACTTGCTTT GTTTTAACAATTTATCATCATCCTTCTATAATCTCTTTCAATTTTTCACTAGCAAAAAAACTCAGTAAGCATTCATGATT CTTCGTAGACATAATTATTAAAAAGTTCTTAGGCACTGAGTCATATAATATTAGGAGGAAAGGTTGGATGGAAAAATGGA GATAGTCATGGGGGATATACATACACACGCGCATATAGTCTTTAAAGATGTCCATACTTGTAGAATTAACATTCACTATG ACAATGTTCAGAAAAATCTTCTTTTGAAATGTATATGTGCAATATGAGCCCAATGGAAGTTAAGGTAGAAAGATTTAGTG TATGTTTGGGTGTGTGCTTGCAAACTTTACTATATGAAATTGATCTTTATTAAATGTGGGTTAAAGTAAATTGCTTTCTG TTTGGAAATATTTATCTCAAATACAAGTTTGCAGTTAAACTCAACATCTAACCCAACAAATGCAGAAGTTAATTTTCTAT TTTTTAGTTAAACTTGCTTTTAGGAGCAAGTTGAAACAACCAAACTTTTTTTGTTTGTTTGTGTAAAATCGTGTTCTAAA CATAGGCTTATTAGACGTGAAGATATGTTTTATTATTATTCTGGGGGTGACTTAATTTTTATTATTCTGTTTGGTATTGA GAGATCCATGAATAGAGATACAGGTCATTAGTGTTGAGTCTCAACAATCTTTGATCAAAAATGTTATTTTGACACCTCTC CACCTCCACTTGGTGAGAGAGAAAGGAAGAGAAGAGAGAGAATTGAGAGATATGATAGGTGATGTGATAGCAAAAGAAGA GACACAAGAAGATAAAATAAGTTAAAATGAGCTGGGAGAGAAAAGGGAGTGTCAACATATCATAACTCTAATTACTTGCT TTCCTTGTGATTACAGATGCGGTTATGAATTTTGCTATCAGTGCGGAGCTGGGTGGAAGGACAAAAAAGCAACATGTTCT TGTCCACTTTGGGCCGAGGAATATTTGGTTAGAGGGACATGAAAGGGAGGAGGAAGATGATGATGAGTTTTATTAAGTAA CTGACCACCTGATCTGATTCACCTACTGTCTGGAATCTGTTTTTTGATGCTACTACTGTCTGGAATCTGGATTTACTACC AGTAAATATTCACATATTGATAAGCAAAATGTGATTGTTTTTTGTTTTCTTTCCCGCCCTGATTTGGCCATTGGTTTATT TTTTGGGTTAACAAATCTCTTATGTTTGGTTAGCA
CDS sequence (LotjaGi3g1v0364600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACGACATGGACGAAACCCAAGACTTGCAGCGGTTACTATCGGAGCACCGCCGTGAACTCACCGCCGCGGAAGCCAT GGAATCCGATCTCGACTTTGCATACCGTATCCAGTTACAAGAAGCCCTCGCCGCCTCCGTCGCCGCCCTCCCCTCTTCCT CCTCCTCCACCGCCATCATCCCGGAAGAGCCCGCCTTCGACGACGCCGTTCTGAACGCCACGTCATTACAGTTAGAGGAG CTAGCGAGGATGGAGCAGGAGATGAAGGACCTGGAGCAGAGCAAGGCGGAGATGCAGCACGCGAGGGAAGACCTCGTCCG TCGGATTCACGACCAGAAGATGGCCTCGGAGATTCTCGCGATCCCTGAGAGAGATTGGGAGGAGTGGGGTGACAATTACG AGAAGGCGTTCGGCGAGGGTTGCTCCTCCGGGGACCCTGGTGCGGTGTTTAGGGTTTATTTCAAGGGTTTGGTGAGTGAG GATTTTGTGAATGGTGAGAGTGAGAGAGTGGTTTTGGGTGGGATTGGTATTGCGATTTGTGATGAGGCTGATAATGTGTT GCTGGAAGTTTCTAAGCCCCTTCTTGGTACTGAAACCAGTAAGAAAATTTCAGAGGCTAAGGCTCTGATTGAAGCTTTCA ATGCTGCCATTTTCATGGACCTGAAGCGTGTTGTTTACTATTGTGATTACCCCCCTCTCTTGCAACATTTAAGTGGAAAG TGGCCTGTGAATCAGCAGAAGCTTGCTAGACTAGTTAATGAAGTGTATCTTCTTCAAAGAAAATTTACATACTGCAATCC AAGGCTTGTGGCGAGACATGATCTCAAGTATGCATTTAAGCTGGCAAGAGATGCAATTGTTTCTCAGTCCACAAGGTCTG CAGAAGCTGGCAGTAGTACAAAGAGTCTGAAAGAAACTTGTGTCATTTGTTTGGAGGATACTGATATCAATCAATTTTTT TCTGTTGATGGATGTCAACACCGGTATTGCTTTTCTTGTGTGAAACAACATGTGGAGGTGAAGCTGCTCCAGGGAATGGT GCCAAAATGCCCTCATGAGGGGTGCAAAAATGAGCTTCTAGCTGAAAGCTGCCGGAAATTCTTGCCTCATAAACTGATTG AGACCATGCAGCAACGAAAAGTAGAAGCTTCAATTCCCGTTACTGAGAAAATCTACTGTCCTTATCCAAGATGCTCTGCA TTAATGTCAAAAACTGAGGTTTTAGAGTACTCCAAAAATGTTATTGGTGCTCAAAAGCAATGTATAAAATGTCGTGGTTT TTTCTGTTTCATCTGCAAGGTCCCTTGGCATAATGGTATGACATGTCATGCTTATAAAAAGTTGAATCCTAACCCTCCTG CTGAAGACCTGAAGCTGAAGTCTCTGGCAACAAGGAGTCTTTGGCGGCAGTGTGTGAAGTGTAACCATATGATTGAACTT GCTGAAGGTTGCTATCACATGACTTGCAGATGCGGTTATGAATTTTGCTATCAGTGCGGAGCTGGGTGGAAGGACAAAAA AGCAACATGTTCTTGTCCACTTTGGGCCGAGGAATATTTGGTTAGAGGGACATGA
Protein sequence (LotjaGi3g1v0364600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDDMDETQDLQRLLSEHRRELTAAEAMESDLDFAYRIQLQEALAASVAALPSSSSSTAIIPEEPAFDDAVLNATSLQLEE LARMEQEMKDLEQSKAEMQHAREDLVRRIHDQKMASEILAIPERDWEEWGDNYEKAFGEGCSSGDPGAVFRVYFKGLVSE DFVNGESERVVLGGIGIAICDEADNVLLEVSKPLLGTETSKKISEAKALIEAFNAAIFMDLKRVVYYCDYPPLLQHLSGK WPVNQQKLARLVNEVYLLQRKFTYCNPRLVARHDLKYAFKLARDAIVSQSTRSAEAGSSTKSLKETCVICLEDTDINQFF SVDGCQHRYCFSCVKQHVEVKLLQGMVPKCPHEGCKNELLAESCRKFLPHKLIETMQQRKVEASIPVTEKIYCPYPRCSA LMSKTEVLEYSKNVIGAQKQCIKCRGFFCFICKVPWHNGMTCHAYKKLNPNPPAEDLKLKSLATRSLWRQCVKCNHMIEL AEGCYHMTCRCGYEFCYQCGAGWKDKKATCSCPLWAEEYLVRGT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Coils | 7 | 27 | 21 | - | – | |
| PANTHER | 28 | 518 | 491 | 5.8E-181 | ||
| PANTHER | 28 | 518 | 491 | 5.8E-181 | – | |
| Coils | 74 | 108 | 35 | - | – | |
| Gene3D | 153 | 294 | 142 | 1.3E-13 | ||
| Pfam | 171 | 285 | 115 | 9.0E-20 | ||
| Gene3D | 301 | 388 | 88 | 2.0E-15 | ||
| ProSiteProfiles | 303 | 516 | 214 | 24.147 | – | |
| SUPERFAMILY | 305 | 387 | 83 | 5.89E-15 | – | |
| ProSiteProfiles | 307 | 351 | 45 | 9.539 | ||
| Pfam | 307 | 351 | 45 | 4.8E-5 | ||
| ProSitePatterns | 325 | 334 | 10 | - | ||
| SMART | 374 | 442 | 69 | 7.4E-15 | ||
| Pfam | 375 | 442 | 68 | 7.7E-14 | ||
| SUPERFAMILY | 389 | 447 | 59 | 9.71E-7 | – | |
| Gene3D | 440 | 520 | 81 | 7.0E-9 | – | |
| SMART | 455 | 512 | 58 | 0.0078 | ||
| SUPERFAMILY | 456 | 519 | 64 | 3.0E-16 | – | |
| Pfam | 457 | 510 | 54 | 8.2E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | RNA-DNA hybrid ribonuclease activity | Catalysis of the endonucleolytic cleavage of RNA in RNA-DNA hybrids to 5'-phosphomonoesters. | ||
| Molecular function | Ubiquitin-protein transferase activity | Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages. | ||
| Biological process | Protein ubiquitination | The process in which one or more ubiquitin groups are added to a protein. | ||
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. |
Expression pattern of LotjaGi3g1v0364600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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