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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0382100 |
| Transcript ID | LotjaGi3g1v0382100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | AT hook motif DNA-binding family protein; TAIR: AT2G45850.1 AT hook motif DNA-binding family protein; Swiss-Prot: sp|O80834|AHL9_ARATH AT-hook motif nuclear-localized protein 9; TrEMBL-Plants: tr|A0A0S3SYX0|A0A0S3SYX0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0382100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:77528932..77533742) extracted from Lotus japonicus Gifu genome v1.2.
GTGAGTACAGCATCTCCACAGCATCACTCATCATCATTAATGATTAGTCACCCCAACCCAACCCAACCCAACCCAACTAG GAGGAAGAAATCTGAGACCCTTATCCCCAGAAAAAAATAATATGCAATCCGATAAGGACTTGTGCAGCTGACACACACCA ACAAACACAAACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGTGTGTTAGTTAACATTAACAAC ACTAGTCAATAGGCGTGTCTTGTTTTTCCTTTTTTCACATTATGCAGTTAATGTTGTTGTTCTCCTTTCTGTGACTCTCT TTCTTTCTTTCTTTGCACTCACTTCTCTTTCTCTCTCTATCATCTCATCAGCACTTCTGTCTGTCATCCACCGCTCTTTA ATTCCCCATGAAACCGTTGAACGTTTTTCAACTCTCACTACCTTCCACTTCTTCATGGAGGATGTCCACCACCACCACAA CCACACCCTTTTGATTCACTTTCTCTCCTAATAAATATGTTAGTATTTTCTCCCTACATTTTGATATGAAATTCATGATG CATTCATAGCATTATTGCTTTCTTATGTTTGAGCTTTGAAATCTGTTTATTCTCCACTTAATTTACCAAGGTTGTAACTT CCCATGTGATGTTTTTTAAATGTTTGCTTGTACTGTGGCATCTTGTGCTCTTTACTTGAATTTGATACTGATATAGACTT GAAGTATATGATTCTACTTTAAAAAAATGAAATTTAGCTTGGGTTTTTGAGTTTTCTGGGTGATGGCATTAGATTCAGGG GTGAGTTTATTTAAATGGTATGGGGTTACCTTGGAATTTGCTTGATGTTTAAGGTTTTATCATGAGTTGGTGAGAAATGA CCTGTTACATTTCACCTGATCTTTAACTTCAATGTGAAGCCTTTTGGTTGTTTCTATTTTTAATTGGTCTTCCCTTTTTT GTGTAGATTAACTTCTGGCTAGCCTTTCCATTATTGTCATTGATCTTTTCTTGTGTTCTGCATGTCTGTGTGCCTTTAAT TAAGTCTTGGGTCCTTTTTCTTTTGCTTCTGCACATATAGATATCATACCTTCATATGCATATATGTGGGAAACTTCAAT TGCTGATTTGAAGGACTTGTGATTGTTCTTCTCAAACTACAGTTATTGTTTATATAGTTTACACACTTCTTGACTCTGTT GTTAGGGACTGCACATTGGATTTCATTGATTTTCTGGTTTTCTGATTAGTCCATTTTTCTCCCCCCCAAATTTGTCACTG ACTTCATATGTGAACAGAGCTAGGTGGTAAACTTGGGAGTATTGAATATTTCCTCAGAATTTTATTGTGAAAGATTGTAA AGGAATTTGAAGTAAATGCATGGATCGAGGGGACCAAATGGCGTCTTACTATATGCAGAGAGGAATGCCTGGTGGTGCTG GAAACCAACCTCAACCAGAATTGCATAATTCATCGAGTATTCGTCCACTGTCGAATAATCCTAATCTATCATTTCAATCA AACATCGGAGGTGGTGCCATTGGATCCACATTGCCATTAGAATCTTCAGGAATTTCGTCTCAATGTGTCAATGTGGGGGC TCCTTCTGGGGAACCTGCCAAAAGGAAGAGAGGAAGACCTAGAAAATATGGGTCTGATGGAACTGTGTCATTGGCATTGA CTCCAACACCAGCTACTCATCCTGGAACCCTTACACAAGGCCAGAAACGGGGTAGAGGGCGCCCCCCAGGGTCCGGGAAA AAACAGCAATTGGCTTCTCTAGGTAAATCTCAGTTCAAAATTTTACTTTGTTGCTTGTTCAATAAAAGAAAAGTAACTCT GATTTGAACTTGAGATGCTGCTTGTTTTGTGAACATATATCTGCGTTTGCATATCTTCTGAGTTAAGGTTTGTTTATTAA TTCATGCTGGTAATCTAATAAAAAATGAACTGAATTAATAATGACATTTATATCCCAATATATATTTATATAAATATTTA TAAATTATTACTTTCTTTGTACTCAAATTTTGCTAATTACAAGATAGATTGGCTTGTATGCAGAAGTGGTTGAGCTTTCT AAAGTTTGGGCTCATTGAGATTAAGAGTTGTCTAACTTACCAAATGAGGTTAAATAACCCCATCCTAGGTAAGTTAGGCA AACCAATGAGATTATTGTACTTCTACAATTTATTTATATCAAATTATGAGAGTGTTGGAACTCTTGACACACGCTATTTT TTTTGTCATTAAATCATTTATTTTTCACAAGGGAAAATTTTGTGTTATAAAGCTCCCGCTATGCGCAAGGTCCAGGGAGG GGCCAGACCCACTTTGGAGATCTAATGTAGGTAGTCCTACCTTGCTCGAACTTGTGACCGCAAACGCAAAGTCACGTAGC AGCAACCTTACCGTTGCGCTGAGGCTCGCCCTCAAAATTATTTATTTTAGTAGCTGAAAGCTTCTCGGTTGTCATAGTCA GAAATTGTTTCATTGTCTGAAGTTATCTGCACTCTCTAAACTATTCAAATTACTATAATAAGGACCTACTTGCTTCTTTC TCTAAAGGCTGATTCATCGTACGGGATTGCTTAATATCAATTTGGTTTAAATGTGTATATAGATTTGTGTTTGATGTTTT GAATGGTTAATGCCAGGTGTGGTGACGTCTGGTTCAGCCGGGATGGGTTTCACTCCTCATGTCATCACCATTGCAATTGG AGAAGTATGCCACATTTTTCGTAAACAATTTGTAGCAATCTTTCTATTTTCTTGGTTGGCTTTGAAAAATTTAATTTAAT TTATGCGAATATCATGTATACCATTTTCTCTTTCAAGGAAGAATTTGACTTGGTAAAGACAAAGCTATGATTAATTGATG TCTATGATAATAAGGAAGTTAATAATCTGGGAAGTATAAAATTGTCAATTTCATCTTTTTTCTTATATTTATTTTTTGAT GACATGATGCTTTATTTTTCATGTAACTATAAAAGCATCTGATATGATACTTCATCTGAACATGATATAATTTGAGACAT ACAATTATGCTCCAGAACAAACTCTTTGATGTATGCTTTAGGTGATGATCCTCTTGAATTTATGCCATATGTTCTGCCAT TTTTAAGTAGTTAAGAAATACTCTATTAAAAGTTGTGCCATTTCTTCTGTGTAGGACATCGCAACAAAAATTATGGCATT TTCTCAGCAGGGACCTAGAGCTATATGTATTTTGTCAGCCAATGGTGCTGTCTCTACTGTGACACTTCGTCAGCCTTCAA CTTCAGGAGGCAGTGTCACATATGAGGTTTGAAACTTCCTTAGCATTATGTTAATTATTTTATCAGACACTTTCTTAGCA TTTTGTATGTACGTTTCGTTTCGATATGCCTGAGGGTTTATAACTAATGAGGTTTGTTAGATTACATATAGCCACATTTG TTTTTGCATAATGCATGAACAAAATGATATGTCAGTCCTTTATGAAGGTAGTATGGGTTACTGATTACAAAGATTTTTCT GTTATTTGAGGAGAATGGCTTAGCTTAAGAATTCAATTGGTGCAGGGGTGTTTATGCAAACAATGTTTTTAAAAATTATA ACTGTTGTGGTTGCTTTAAGCTTGTTTCATGTCTGAGCCTCAGGTGCATGTAAAATCAGATTCGTTTGCTTTGGTTTGTT TCTTTTTCCTGTCCTTCATAATTCTCTTTATCATGTTAAGGTTATTTGTGTGTCGTTATATCTAATTTTGGGTGGACTTG GCCTCGATAGGGGCGTTTTGAGATATTGTGCCTATCAGGCTCTTACTTGCTTGCTGATGGTGGTGGTGGCTCCCGCAATC GAACTGGTGGATTAAGTGTTTCCCTTGCAAGTCCTGATGGTCGTGTCATCGGTGGAGGAGTTGGTGGAGTGCTTATTGCA GCAAGTCTGGTTCAGGTAATTGCTCTTTAACTGCTGCCACCATTCTCACATCAAAATCAGAAACTTGTGAAATTTGATAC TTTTATGGTTATTTGCACCCGTGGCTCGAAACTAGTTTTATTTTGGATGGCGAGATTTGATCGGTTATAACTTAAAACTA CAGGTGATAGTTGGGAGCTTCATTTGGGGTGGATCAAAGACGAAGAACAAGAAAAATGAAGATTCAGAAGGTGCAGAAGT TTCTATGGAGTCAGATCATCAGGCAGTTCATAATCCAGTCGCAGTGAATAGCATTTCCCCAAACCAGAATCTGACTGCAA TCTCATCTCCCAGCCCTTGGCCTGCATCGCGTACATTGGATATGCGTAATTCCCATATCGACATTGATTTAATGCGCGGG TGACAATTTATTTAGCATTCACCAGTAGTAGTACTGGATTTCTATTTCAGGCTCATGGTCCCTCATCTAATTTTAATGTA GTAGTGAATGAGTGATGACAGAATGGGAAGTACCAACAGTAGTGTAGAAGTGAGCTGACTTTTGGAATTTGATAAATGTT ACCTAGAGCCATGATTGACTTTAGGGGGTTGTCCTACTATTTTTGTAGCTTTCAGGAATTTTTAATTTGATGATTTCATT TTCTTGATTAAGTACTGTTTATATCCTATTTGGAAGAAATTTACAATAAGGTAGTTGTTTTGTGGTTTAAGGGCATATAT CATGTGATATGATCTGTTATTTTCTTTGTCACTGAATTGTGTTCTGGAATCCAATGACACAATAGGAAGTGAGTTACCCT GCTCAATTCCAATGTAACATTGACATTCTCTCTTATGCCTCACATTGTCCCTTTTAAAATGGTCCTCTCATTTGAAGTCC ATTGCTTAGCT
CDS sequence (LotjaGi3g1v0382100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATCGAGGGGACCAAATGGCGTCTTACTATATGCAGAGAGGAATGCCTGGTGGTGCTGGAAACCAACCTCAACCAGA ATTGCATAATTCATCGAGTATTCGTCCACTGTCGAATAATCCTAATCTATCATTTCAATCAAACATCGGAGGTGGTGCCA TTGGATCCACATTGCCATTAGAATCTTCAGGAATTTCGTCTCAATGTGTCAATGTGGGGGCTCCTTCTGGGGAACCTGCC AAAAGGAAGAGAGGAAGACCTAGAAAATATGGGTCTGATGGAACTGTGTCATTGGCATTGACTCCAACACCAGCTACTCA TCCTGGAACCCTTACACAAGGCCAGAAACGGGGTAGAGGGCGCCCCCCAGGGTCCGGGAAAAAACAGCAATTGGCTTCTC TAGGTGTGGTGACGTCTGGTTCAGCCGGGATGGGTTTCACTCCTCATGTCATCACCATTGCAATTGGAGAAGACATCGCA ACAAAAATTATGGCATTTTCTCAGCAGGGACCTAGAGCTATATGTATTTTGTCAGCCAATGGTGCTGTCTCTACTGTGAC ACTTCGTCAGCCTTCAACTTCAGGAGGCAGTGTCACATATGAGGGGCGTTTTGAGATATTGTGCCTATCAGGCTCTTACT TGCTTGCTGATGGTGGTGGTGGCTCCCGCAATCGAACTGGTGGATTAAGTGTTTCCCTTGCAAGTCCTGATGGTCGTGTC ATCGGTGGAGGAGTTGGTGGAGTGCTTATTGCAGCAAGTCTGGTTCAGGTGATAGTTGGGAGCTTCATTTGGGGTGGATC AAAGACGAAGAACAAGAAAAATGAAGATTCAGAAGGTGCAGAAGTTTCTATGGAGTCAGATCATCAGGCAGTTCATAATC CAGTCGCAGTGAATAGCATTTCCCCAAACCAGAATCTGACTGCAATCTCATCTCCCAGCCCTTGGCCTGCATCGCGTACA TTGGATATGCGTAATTCCCATATCGACATTGATTTAATGCGCGGGTGA
Protein sequence (LotjaGi3g1v0382100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDRGDQMASYYMQRGMPGGAGNQPQPELHNSSSIRPLSNNPNLSFQSNIGGGAIGSTLPLESSGISSQCVNVGAPSGEPA KRKRGRPRKYGSDGTVSLALTPTPATHPGTLTQGQKRGRGRPPGSGKKQQLASLGVVTSGSAGMGFTPHVITIAIGEDIA TKIMAFSQQGPRAICILSANGAVSTVTLRQPSTSGGSVTYEGRFEILCLSGSYLLADGGGGSRNRTGGLSVSLASPDGRV IGGGVGGVLIAASLVQVIVGSFIWGGSKTKNKKNEDSEGAEVSMESDHQAVHNPVAVNSISPNQNLTAISSPSPWPASRT LDMRNSHIDIDLMRG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 307 | 307 | 2.0E-114 | ||
| PANTHER | 1 | 307 | 307 | 2.0E-114 | – | |
| Phobius | 1 | 239 | 239 | - | – | |
| MobiDBLite | 1 | 44 | 44 | - | – | |
| MobiDBLite | 24 | 44 | 21 | - | – | |
| MobiDBLite | 69 | 131 | 63 | - | – | |
| SMART | 81 | 93 | 13 | 0.23 | ||
| MobiDBLite | 96 | 113 | 18 | - | – | |
| SMART | 116 | 128 | 13 | 9.2 | ||
| ProSiteProfiles | 142 | 285 | 144 | 38.178 | ||
| SUPERFAMILY | 146 | 265 | 120 | 1.65E-29 | – | |
| Pfam | 147 | 262 | 116 | 1.7E-26 | ||
| Gene3D | 147 | 288 | 142 | 1.4E-8 | – | |
| CDD | 147 | 262 | 116 | 1.19806E-26 | ||
| Phobius | 240 | 264 | 25 | - | – | |
| TMHMM | 242 | 264 | 23 | - | – | |
| Phobius | 265 | 335 | 71 | - | – | |
| MobiDBLite | 269 | 285 | 17 | - | – | |
| MobiDBLite | 269 | 288 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | AT DNA binding | Interacting selectively and non-covalently with oligo(A) and oligo(T) tracts of DNA (AT DNA). |
Expression pattern of LotjaGi3g1v0382100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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