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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0382200 |
| Transcript ID | LotjaGi3g1v0382200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | AT hook motif DNA-binding family protein; TAIR: AT2G45850.1 AT hook motif DNA-binding family protein; Swiss-Prot: sp|O80834|AHL9_ARATH AT-hook motif nuclear-localized protein 9; TrEMBL-Plants: tr|V7AN95|V7AN95_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0382200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:77571719..77576047) extracted from Lotus japonicus Gifu genome v1.2.
TTGGATGTGAATGAATTATTTGAATTTCATTCATCTAAAGTAAAACTAAAAATTTTCTCACTTTAAAATGTAAAGTAAGT CAGTAATAGTGATTATTAACTCTAAAGAGTCAATAAATCAAGTCAATCCTCTCACTTTTTCCATTGTCTTTCCTTTTTTC ACATTAAAGAGAAGTTACATGTTGTTCTCCTTCTCCTTATGTGGCTCTCATTCTTTGCACTCACTTACCCTCTTCGCACT TCACTTCTGTCATCCACCGCTCTTCATTCTTCAATTCCCCATCAAACCATTGAACGTTTTTCAACTCCCACTGGCTTCCA CTTCTTCATGGAAGATGACAACCACCACCACCACCACACTCTTTTGATTCTCTCTCCTCAGATGTTAGTACTCTCTCCAC ATTTTCAAATGAAACTCGTTATGCATTTATGGCATTATTGCTTTCTTACTGTTTAGTCTTCACCCCATTTACCAAAGTTG TGATGTTTTTGAGTTAGTTTCTTGTAGTATGACATCTTGTGCTCTTTACTTGAATTTGATACTGGGTTTATGATATAAAC TTGAAGTATTTGATTCTTCTTTAAAAAAATGAAATTTAGCTTGGCTTTTTGAGTTTTCTGGGTGTTAGCATCAGATTCAG TTCAGGGGTGACTGGTGAGTTTTACTTATATGATGGTATGAGGGAGATTGCTTCATGTTTAAGGTTTTACTATAGGTTGG TTAGAATGGACCTGTTACAGTTCACTTGGTCTTTATCTTCAATGTGAAGCCTTTTAGTTGTTTCTATATAGTTTGGTAAG GTGTAAACTAACTTCTCTTTTTGTCTTCTCTTGATATGGTCTTGTCATGTAGACTTTTTCCCTTGTCTTTGTGGATTACC TTCTAGTTCTAGCTGGCCTTTCCATTCTTGTCTGGGTGCCTTTAAGTCTTGGGTCCTTTTCTTCTGCACATATAGAAATC AATATCATACCTTCATATGCATATTTCAGAAGGGTACCATCCTTGAGAAACTTTATATGTGGGGGAAACTTCAATTGATT ATTTGAAGGACTTGTGACTTTTTTTTCTCAAACTACAGTTATTGCTTATGTAATTTACACACTTCTTGACACTATTGTCA GTGACTGCACATTGGATTTATTTGATTTCATGGTTTTCTTATTTGTCCTATTTTCTTTTTTGCTCAAATTTGTCATTGGA TGCATATGAGAACAGAGCTAGGTGGTAAACTTTGGCTTATTGAATCTTAGAGGTGTGGAGTTTCTTGTGGAAGATTGTAA AGGAACTTGAAGTAAATTAAATGCATGGATCGAGGGGACCAAATGGCGTCATACTATATGCAGAGAGGAATACCTGGTGC TGCTGGGAACCAACCTGAATTGCTTAATTCATCGAGTATTCAGCCACTGCCTAACCCTAATCCACAATTTCAATCAAACA TTGGAGGTGGTACCATTGGATCCACATTGCCATTAGAATCTTCTGGAATTTCATCTCAATGTGTCAATGTGGGGGCTCCT TCTGGGGCACCTGTCAAAAGGAAGAGAGGGAGACCTAGAAAATATGGGTCTGGTCAAGGAACTGTGTCATTGGCATTGAC TCCAACACCAGCTACTCATCCTGGAACCTTTACACAAGGCCAGAAAAGGGGTAGAGGGCGCCCCCCTGGGTCTGGGAAGA AACAGCAATTGGCTTCTCTAGGTAAATCTCTATTCTAAAATAAAAGTGAAGTAATTTTTATTTGAACTTGAGATGCTTCT GGTTTTGTGAGCATATATCTGAGTATTATTTGGGTTTGCATATCATCTTGTTTTCTGAGTTAAGGTTTGTTTATTCATTC ATGCTGGTAGTCTAATATAAATATGAATAGAATATAACAATGACCTTTATTTTCCAATATGTGTGTGTGTGTGTCTGTGA GTTTGTATTCTCTGTATATTTGTGTTTTATTCAGCATAAGGGATTGATTTTTATTAATTTAATTTGGTTTAAATGTGTGT GTATTGTGTATGTATATATGTATATTTGTGTTTGATGTATTGAATGGTTATTGCCAGGTGAATTGGTGTCTGGTTCAGCC GGGATGGGTTTCACTCCTCATGTCATCACTGTAGCAATTGGAGAAGTATGCCACAGTTTTTTCTGACAATTTGTAGCAAT CTTTCTCTTTTCTTGGTCTGTGTTGAAAACTTAAGCTTGGTATATGTTAATATCATGTATTCATGTGTACTATTTTATCC TTAAAGGAAGGAATTGACTTAGTAAAGCCAAAGCCAAGTATTATGGAAAATTGATGTCTATGATAATAAAGATAATAGTG CGGGAAAGTATAAATTAAGTTGTCAATTTTATCTTTTCTTTGGTACTTATTTTTTGTTGAAGGGCTGCTTTATTCTTCAT GGAGTTATCAAAGCACATGATATGATACTTCCCCTGTAAATGATATTTGAGACATACAATTGGGTTACAGAAGATACTCT TTGACGTTTCTTTTAAGTGATGATCCTGTTGAACTTATGCCATATGTTTTTCCATTTGGGCAAGTATTTATAAATATGCT ATTGAAAATTGTGCCTTTTCTTCTCTATAGGACATTGCAACAAAGATTATGGCATTTTCTCAGCAGGGACCTAGGGCTAT ATGTATATTGTCAGCTAATGGTGCTGTCTCTACTGCGACACTCGTTCAGCCTTCTTCTTCAGGGGGCAGTGTCACATATA AGGTTTGGAACTTTCTTAGCATTATGCATATATGTTTGGATATGCCTATGGGTTCATAAATAATTAGGTTTGCTTAAATA CATACATTTGTGTTAGAAGCAACTTGTATTAGAACCGGATGATTGTCAATTACAGCTAATGAGAAGACTGAAATTGACAA GTTGAAAGTCTTGCTTAAAAGTGAATTTGAATGAAAGATTTGGGTGAAGAAAAGATCTTAGGCATGAAGATTTGGAAAGA TAGAAAAGGGAGTCACTTGCGTTAGTTCTTGGCTATTCTAGTTTCAGATTTTGAGTTACAAAAATATATTATTGCCAGCC TTCCGAGTTTCTAGTCATTTATGCTTGGTTTCTTGAAGTTATTCATTTTACTTGGCCTTTCTTTTATCTATTTGTTGTTT TTTGCACCATCCTAAGTAGTTTAGAATCAGTTTATTTTATTTTGTTTTATTTCTTTCTCCTATCCTTCTTTACTCTCTTT ATCGTGCTAACGTTATTTATGTACATTAATGTCTAATTTTTTGTGGATTTTGGTCTCAAAAGGGGCTTTTTGAGATTTTG TGCCTGTCAGGCTCTTACTTTCTTGCTGATGGTGGTGGCTCCCGCAGTCAAACTGGTGGATTAAATATTTCCCTTGCAAG TCCTGATGGTCGTGTCATCGGCGGAGGAGTTGGTGGAGTGCTTATTGCAGCAAGTCTGATTCAGGTAATTGCACTTTCAC ATCAAAACCGGGAACTTGTTAAATTAGAAAGTTTTGTGGTTATTTGCACTCATCTCTCCAAACTCTTAGTTCTAATTTTC TATGGCAAGATTTGATCAGTTATAACTTAAAACTACAGGTGATAGTTGGGAGCTTCATGTGGGGTGGATCAAAGACAAAG AACAAAAACAAACAAGATTCAGAAAATGCAGAAGTTGCTATGGAGTCAGATCATCATGCAGTTCACAATCCAGTTGCAGT GAATAGCATTTCTTCAAATCAAAATCTTACTCCAATCTCATCTCTAAGTTCTTGGCCGGCATCGCGTCAATTGGATATGC GTAATTCCCATATTGGCATTGATTTAATGCGTGGGTGACAATTTATTTAGCATTCACCAGTACAGGATATCTATTTCAAA TTCATGGTCCCTTATCTAATGGATGAATCACACTCATCAACCGCCATGCCTCCACGCTCCTACTGTTGGTGCTTATGGCG ATGTTCTGATGGCACCTGCTTGTGGATCCATTCAGTGCAAAGTGCAACCACAGGTTTGTCCTCAGAATGGTACTAGTTGT CACATTCTGAAGGGCCACCACTTCTGCTTCTTTTTCAAAGCTGTTCAAAGTGAGATATGCCTTGGTGTGACTAGTCACTC GTCCGGAACATTCATGTTTTGTACATTTTTCTTTGTTGGCAGCAATGAGAATTATTCATTTTGTCCCGGAGGGGCTTTTT TCCCGTTGATTAATTCTTCCACTCAGACGACACTGTTGTGCTCCTGAGTGGAGACAATTTGTTATTATAAGAAAAACCAG TAGAATGCAAGATTCCTTTGAGCAAAAATTCTTCATTCTGTGTTTTGTGCTTTAAGTTGTGCTCCTAGTTCTGATTGCCT GATGCAGGG
CDS sequence (LotjaGi3g1v0382200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATCGAGGGGACCAAATGGCGTCATACTATATGCAGAGAGGAATACCTGGTGCTGCTGGGAACCAACCTGAATTGCT TAATTCATCGAGTATTCAGCCACTGCCTAACCCTAATCCACAATTTCAATCAAACATTGGAGGTGGTACCATTGGATCCA CATTGCCATTAGAATCTTCTGGAATTTCATCTCAATGTGTCAATGTGGGGGCTCCTTCTGGGGCACCTGTCAAAAGGAAG AGAGGGAGACCTAGAAAATATGGGTCTGGTCAAGGAACTGTGTCATTGGCATTGACTCCAACACCAGCTACTCATCCTGG AACCTTTACACAAGGCCAGAAAAGGGGTAGAGGGCGCCCCCCTGGGTCTGGGAAGAAACAGCAATTGGCTTCTCTAGGTG AATTGGTGTCTGGTTCAGCCGGGATGGGTTTCACTCCTCATGTCATCACTGTAGCAATTGGAGAAGACATTGCAACAAAG ATTATGGCATTTTCTCAGCAGGGACCTAGGGCTATATGTATATTGTCAGCTAATGGTGCTGTCTCTACTGCGACACTCGT TCAGCCTTCTTCTTCAGGGGGCAGTGTCACATATAAGGGGCTTTTTGAGATTTTGTGCCTGTCAGGCTCTTACTTTCTTG CTGATGGTGGTGGCTCCCGCAGTCAAACTGGTGGATTAAATATTTCCCTTGCAAGTCCTGATGGTCGTGTCATCGGCGGA GGAGTTGGTGGAGTGCTTATTGCAGCAAGTCTGATTCAGGTGATAGTTGGGAGCTTCATGTGGGGTGGATCAAAGACAAA GAACAAAAACAAACAAGATTCAGAAAATGCAGAAGTTGCTATGGAGTCAGATCATCATGCAGTTCACAATCCAGTTGCAG TGAATAGCATTTCTTCAAATCAAAATCTTACTCCAATCTCATCTCTAAGTTCTTGGCCGGCATCGCGTCAATTGGATATG CGTAATTCCCATATTGGCATTGATTTAATGCGTGGGTGA
Protein sequence (LotjaGi3g1v0382200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDRGDQMASYYMQRGIPGAAGNQPELLNSSSIQPLPNPNPQFQSNIGGGTIGSTLPLESSGISSQCVNVGAPSGAPVKRK RGRPRKYGSGQGTVSLALTPTPATHPGTFTQGQKRGRGRPPGSGKKQQLASLGELVSGSAGMGFTPHVITVAIGEDIATK IMAFSQQGPRAICILSANGAVSTATLVQPSSSGGSVTYKGLFEILCLSGSYFLADGGGSRSQTGGLNISLASPDGRVIGG GVGGVLIAASLIQVIVGSFMWGGSKTKNKNKQDSENAEVAMESDHHAVHNPVAVNSISSNQNLTPISSLSSWPASRQLDM RNSHIGIDLMRG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 317 | 317 | 3.8E-107 | – | |
| PANTHER | 1 | 317 | 317 | 3.8E-107 | ||
| Phobius | 1 | 236 | 236 | - | – | |
| MobiDBLite | 15 | 130 | 116 | - | – | |
| MobiDBLite | 23 | 70 | 48 | - | – | |
| SMART | 78 | 90 | 13 | 0.84 | ||
| MobiDBLite | 92 | 111 | 20 | - | – | |
| SMART | 114 | 126 | 13 | 9.2 | ||
| ProSiteProfiles | 140 | 281 | 142 | 34.789 | ||
| SUPERFAMILY | 144 | 261 | 118 | 1.54E-27 | – | |
| CDD | 145 | 259 | 115 | 1.72237E-22 | ||
| Pfam | 145 | 259 | 115 | 7.1E-25 | ||
| Gene3D | 145 | 287 | 143 | 2.4E-7 | – | |
| TMHMM | 237 | 259 | 23 | - | – | |
| Phobius | 237 | 261 | 25 | - | – | |
| Phobius | 262 | 332 | 71 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | AT DNA binding | Interacting selectively and non-covalently with oligo(A) and oligo(T) tracts of DNA (AT DNA). |
Expression pattern of LotjaGi3g1v0382200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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