Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0443900 |
| Transcript ID | LotjaGi3g1v0443900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | E3 ubiquitin-protein ligase; TAIR: AT4G03510.1 RING membrane-anchor 1; Swiss-Prot: sp|Q6R567|RMA1_CAPAN E3 ubiquitin-protein ligase RMA1H1; TrEMBL-Plants: tr|V7BV69|V7BV69_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0443900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:85707689..85710447) extracted from Lotus japonicus Gifu genome v1.2.
TTTAACTAATTTCTTAACAATATTATTATTTTTCTTATAATTATTATGTAGCTCTTATTCTCTCTCTCCTACTACTATTT TATTTCTCCTCTCTCCTATATAAAACAAAAATCACATCCCCTTCTCAACCCTCTCCTTCTTCTTCCTCCTTCCCCATTCA ATCATTTCTGTTGCCTACCAACCAAAGCTTCTTTCAGAGCTTCCACCCCACACCCTCAACACACAACTCCTTCCCCCTCT TATCATGTAAGTATCAATCTCTCTCTCTCTCTCTCTCTCTCATTTCCACTGTCATGGAACATGAATCCAATTTTTGTTTT TGCTTATGCTGTTTCTTTTATCTAGGTCTTTCGAACTCTTATTTGTTTTTGCCTAATTTGTTCAATCATCGTTCGTTTGC AGAGATTTATGTTGATGTTACTTTTCAATTACAATCATGGTGTATCAGAGTCCTCTTTTTCTTACCTTGATTCTTTTTTG CAGTTTTGATGATGTTGTTTTTTCTAAAGTTCACATCTTTTTGGGTTTAGTAATTTTATTCAATTTTAATCGTTAAAAAA TGCAACAATTGCAAATTTTACTGGATTCAGAACATTCTTAAGCCTTGTTTGGTTAATTTGTTTCAGTGGGTTGCACCTTG GTCTCTGCTTTTCAGTATAGGCCATCATGGATTCATGGTCCACAGTTCAAAGATTTTTCACATGTGAGATCAAGAGAGAT ATTTAATTGCTGTTAGAGTTCATTAAAAAATTGAACAATGTTGATTTAGTCAATGGTTTAGACTTTAGAATTTAGATTTT TGAAATTGCTCTTGTGAGTTCCTTCCTCTTACATTCCAAGTAGCTTCCTGTTTAGAGAGTTGTCTGATTTTGACATATTG GTCTCAATTGTAAGTTGATTCTTGAATCCTTCAAATTTAGTTAAGCTGTTTGGTGGAGTCTCTAATAAGCTGAATAAACA TATTTTTAAGTTCTGATACATCCCTTTGTGATTTAGTTAAGCTTACCAAGTGATTTAAGTTCTGATACATTAAGTTACTG CAGACCCTTAGTTTTGGTCGGTAAGGTGTTGCAACAAGAGGGAACATGACATGTGAGTTTTACACTTGGGGTTAAAAAAA TGGTTCATTTAGGTTTCACTAAAATTGAGGTTGAATCAATTAGAATAAAGTAGAATGTTGTTTAATAATGTTAAATCCGT GTGCTAAGTGCCAACCACCATTTTATAAGTCCTTACTTAGAATAGCTTTTGAAAGAGATTATATTAAATTTGAATGGTTA TTTCTAAGTGCTGTGAAGGCATCAAAACATTATTTTAGGTGGTCCTCTCCTTGAGAGTTGAAAAGACTAGTCTTGTTTGG CGAAAATGAAGTACATGATCTTGGTGTTAGAACAACTAGAAAATTGGTTAGGTGAGCTGCTGCTCTTAAACATTTCACCT ACCAAAACTGGTTGTGGTGTCTTTATCACTTCTAGAAAATGCCTGGTAGGTTCAAGTTTCTTCCTACAGGATTAGTTGGG GGTAGGGATGCTAAAACAAAATTCACACTGATTTTCTAGCGGTGTTCTTTGAAGTTTTCCAGGTTGAAACATGGGTTTCT TGATCTGATTACAAATTTTGTAGATTGATTTTCTTAAACCTTTTTAGATTTTTATTTTATTAAGAAAACTGCATTTATGG AGGATGAATTATCTGTTAGCAGACACTTATAATTTTTCATGTGAACTTTTGTATTTCAGATTCAGGCAACCAACAGAGAA CACATTGTGAGACAGAAGAAAAATGGCCTCAATGCAGTATTTTGAGGAGCCTGTGCCCCAAGTGGATTCATTTGAAGACA AATCATCTCTGGAAATGTGGAAATGTGGCGGTGATGATGCTATTGAAGATTCTGATAAAAATGGCTCTGGTGGCTTTGAT TGCAACATCTGCTTAGACTGTGTGCAAGATCCAGTGGTTACTCTGTGTGGTCATCTCTATTGTTGGCCCTGCATTTACAA ATGGCTTAATTTCTACAGCATCTCATCAGACTATGAAGAAAAGGAGGAGCCTATATGTCCGGTATGCAAATCAGAAATCT CACAATCATCCCTCGTTCCACTATACGGCCGCGAAGGCCAAACCACCTCACCTTCTAAAAGCAAGGCTCAGCAAGTAGGG ATTGCCATACCTCCAAGACCCCTTGTTCCTTCATGGGTGGCTGAGTTATCAAGATCTTCCCAACCTACTTCTCAAGCTCA TCATCATCCCCATTATCCTCACCATCCTCAACAGTTCAACTCAATTTCAGGAAGTTACACATCACCAATGCTTAACACAG GTGGTTCACAAACAGCTTATGGAGTCATTGGCGAGATGATATATGCAAGGGTCTTTGGAAACCAAGTAACAAACATATAT ACATACCCTAATTCATATGATCATTCCAGGATCAGTAGTAATCCAAGGATCAGAAGGCATTTGATGCAAGCTGATAAGTC ACTTAGTAGAATCTGTTTTTTCCTCCTTTGTTGTGCAGTTTTGTGTCTTCTCTTATTCTGACTTCTATCCATTTTTCCTG GGCAATATCATCCCTGTATAGAATATAAGTAGTATGCGGGTTCATCTAGATGTATTATATAAAGAGAACTTGCATATTTG GTGCTTGAGATATGTTATTATTTGCATAAGTTTACACTTATTTTAAACTAGTGATTATACCCGTGCGATGCACGGGATCT AAATCATTGATTTCGTTGAAAAAATTACGATTAATTTAA
CDS sequence (LotjaGi3g1v0443900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCTCAATGCAGTATTTTGAGGAGCCTGTGCCCCAAGTGGATTCATTTGAAGACAAATCATCTCTGGAAATGTGGAA ATGTGGCGGTGATGATGCTATTGAAGATTCTGATAAAAATGGCTCTGGTGGCTTTGATTGCAACATCTGCTTAGACTGTG TGCAAGATCCAGTGGTTACTCTGTGTGGTCATCTCTATTGTTGGCCCTGCATTTACAAATGGCTTAATTTCTACAGCATC TCATCAGACTATGAAGAAAAGGAGGAGCCTATATGTCCGGTATGCAAATCAGAAATCTCACAATCATCCCTCGTTCCACT ATACGGCCGCGAAGGCCAAACCACCTCACCTTCTAAAAGCAAGGCTCAGCAAGTAGGGATTGCCATACCTCCAAGACCCC TTGTTCCTTCATGGGTGGCTGAGTTATCAAGATCTTCCCAACCTACTTCTCAAGCTCATCATCATCCCCATTATCCTCAC CATCCTCAACAGTTCAACTCAATTTCAGGAAGTTACACATCACCAATGCTTAACACAGGTGGTTCACAAACAGCTTATGG AGTCATTGGCGAGATGATATATGCAAGGGTCTTTGGAAACCAAGTAACAAACATATATACATACCCTAATTCATATGATC ATTCCAGGATCAGTAGTAATCCAAGGATCAGAAGGCATTTGATGCAAGCTGATAAGTCACTTAGTAGAATCTGTTTTTTC CTCCTTTGTTGTGCAGTTTTGTGTCTTCTCTTATTCTGA
Protein sequence (LotjaGi3g1v0443900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASMQYFEEPVPQVDSFEDKSSLEMWKCGGDDAIEDSDKNGSGGFDCNICLDCVQDPVVTLCGHLYCWPCIYKWLNFYSI SSDYEEKEEPICPVCKSEISQSSLVPLYGREGQTTSPSKSKAQQVGIAIPPRPLVPSWVAELSRSSQPTSQAHHHPHYPH HPQQFNSISGSYTSPMLNTGGSQTAYGVIGEMIYARVFGNQVTNIYTYPNSYDHSRISSNPRIRRHLMQADKSLSRICFF LLCCAVLCLLLF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 232 | 232 | - | – | |
| PANTHER | 16 | 245 | 230 | 2.9E-89 | – | |
| PANTHER | 16 | 245 | 230 | 2.9E-89 | – | |
| Gene3D | 42 | 109 | 68 | 5.2E-17 | ||
| SUPERFAMILY | 44 | 108 | 65 | 1.26E-16 | – | |
| CDD | 45 | 97 | 53 | 1.23236E-23 | – | |
| ProSiteProfiles | 47 | 96 | 50 | 12.475 | ||
| SMART | 47 | 95 | 49 | 1.6E-8 | ||
| Pfam | 47 | 95 | 49 | 6.7E-8 | ||
| ProSitePatterns | 62 | 71 | 10 | - | ||
| Phobius | 233 | 251 | 19 | - | – | |
| Phobius | 252 | 252 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. |
Expression pattern of LotjaGi3g1v0443900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…