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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0454700 |
| Transcript ID | LotjaGi3g1v0454700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | E3 ubiquitin-protein ligase; TAIR: AT4G03510.1 RING membrane-anchor 1; Swiss-Prot: sp|Q6R567|RMA1_CAPAN E3 ubiquitin-protein ligase RMA1H1; TrEMBL-Plants: tr|A0A072U1G6|A0A072U1G6_MEDTR E3 ubiquitin-protein ligase RMA1H1-like protein; Found in the gene: LotjaGi3g1v0454700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:86803262..86811366) extracted from Lotus japonicus Gifu genome v1.2.
GTAAACTGATAAATACGAATTTATTTCAAGCTTCAACTGTTATAAGCATTTTTAAAATACAAAACCCCAAAACAAAACAG CATTCAACAAAAAAACTGTTATTATAAAACCCCATCGTCCTCTGTTGTTCCTCGCTTCTTTTCCCTCGTACGCTATCCCT TCCCCTGTTCTTCCTTCTTCCTCTTCCCCTTCCCTTCCACATACTTTCCTCTTCTCTGTCTCTGCTTCTCAACGCGCTTA TCCATTGTTTCCATTGAGTTTGCAACTTCACAGAGAGAGACCTTGCAGTTGTTGTAACCTCTACTCATCTGTAACTGTAA GTATTCAAATCTCATGCTGTTTCATTCTTTGTGTGATAAGCCTCTTTTGTCCATCTGGGTGTTGAAATTTTTCATCAAAC AGCTTTGTTTTTCTTTTGTTTTCACTCTTTGATTGTTGTGAGGGACAACTTGGTCATTAATGGTTCCTTTAGCTTTCCGC AAAGAAACTAGTATCTATCCTCTGCGTTGAGATTCTGATTCCTTGTGTTTGCAATAGATGGCAATACCTTTTTCCTTCAC CAGTATGGTTAACTTTCCTTGCTGATTGGTTCGTGTTAAAAAATCATGAAAATTCTTACCCATTTTTCCTGCTTTTTATG TTTATGGCTTTACAATCATGTTCTCTTTATTTTTTTTTGTGTGTCTGGTTGTGTTATACTGTGATGGTTTCAGATGATTT CTTTCTGATCAAAATATGTCAAATTTCGCCACCTTTGTTTATGATCTTAAGTCTTAACTAATTTTCTCTGTTCACAAGTT TAATTTAATGCTTGAATCTATTTTGGGGAGAAACTTTTGTGAGTAACTTCTGGATTTCAAAATTGATTTTGATAATATGA TCCAAACATTCTATGCATTCCCTGTGAACTTCTGTTCTCCATAACTAGATGGAGGTATGGGATTGAACTTTGGACTCTGT TTCCAGAATAGTCCACTATTTTCCATTATTCATTAATGATTGAGTCTTGTCTCTCACAGCAGATCTGAAAAGAAATTTCA TTGCTATTTCCTCAAAATTGATTTCGTGATTGGTGTGCTTTTAGATATCAGAAACTGCTTTACATGGTCAGCATGATGCA TATAATTAAATATACATGGTCTGTATGGTACATAATTGAATAGGTAGATGAATTCTACCGATAAATTTTATTTTAATCTG TCAAACAAAGATGATTTTTATCATACAGCTGGCCCATTTAATGTCTGCCACTGTAATGGTCAATTTTTTCTGAAAACACA AATGGTTGTGGACTCTGTAGTCTTTACTGAAAACACTTTTTCAGAGCGACCAAAACAAAAATTGTGAATTTATTTCTAAC TATCCTGAAGAATTAAAACCTTAGAGGAATGATTGGAGAGTTTGGTATACTTAGTGGATGTTTGAATACATGTTACAATG AGTCAAAATCAGGATGGATATATGTAATTTTCTTTAATTTAATTATGGTTTTCAACCATGTATTCAACAATTAGTGAATA ACTTTGAAATATGATTTTATCTCTTTCTAAACAATTATTATTATAAAAAAAATATTTGATGGTTAGGAGTGGTTAGAAGT GGTTAGAAGTTATACCACAACTTGGACTTATCACCTATAGCCAAACTCCGACCCCACCCAAACCAACCATTTGAGCCATG CTTATCCAACTCAACATAATTTTTTATAAAGATCCTTAACTTTCAAGGTCAATTAATGCCCTATATAGAAGTTGGTTTCC AAATTTCTGTATATGTATTTTTGTATATGTTGTTGGTACTATGATATTATCATGTAAACCTTATGATTTGATGCTAAGAT TTTGGAGTTTGTCAACCATAAAGAAAATAGTCATTCCATTGCTCTATGGAGGTTGGCATTTTACATTTTAACTTTCAGTT TTGATGCTTATTTTGTTATGAATTTCTAGAGTGCTTTTCAAAATTTAAACCGAGCAGATATTCTACCCTAATGATGTCTC AATTTCCTGTTTCATTAATGAAATCCTGCAATGGCAATTAAAAACGACATGAGTGGGGCAGCTACAAAATTACTTGGTGG TTTTTAATTTACATGTCAAAATTTTATTGGTGCGATAGAAAATGATGATCAATAGCTGCTTATTAGGCACTCATAGAATG CTGATGTTTTTCAGGTTCAGGTACCACTACCAGAAGGAGAAAATTCTGTAACATACCAAACAATGGCCTTAGATGCATAC TTGGAGGAGACTATGTCTCAAATTGATTCCTTTGAAGATAGACCATCTTTGGAAAAATGGAAATCCTCCACTGATTTCAT TGCAGAGTCTGATAGAACTTCCTCTGGTGGCTTTGACTGCAACATCTGCCTAGACTGTGTTCAAGATCCAGTGGTCACTC TCTGTGGCCATCTTTACTGCTGGCCCTGCATTTACAAATGGCTTAATTCGAATAGCGCTTCTTCAGAAAACGTGGAGCAG AATAAGCCACAATGTCCAGTGTGCAAATCAGAAGTTTCTCAATCCTCACTAGTTCCATTGTATGGCCGTGGCCAAACCAC AATAGCTTCTAAAAACAAGGCTTATCAACAAGTTGGGAGTGTCATCCCAAGAAGACCCTTGGGTCCCATATTGTATAATG CTACATCAACTGCTTCCGAACCAACTTTTCAAAGTAACCAGCATTTCCATGATCCTTATCATCGTCATCATCATCATCAT CATCATCAAATGTTCAACTCAATTCCAAGCAGTTATAGTACCTCACCAATGTTTAGCACAAGTGGTTCACTTGATAACAC GTTTGGGATCTTTGGTGAGATGATGTATGCAACGGTGTTTGGGAACCAGGTGTCAAACATGTACTCGTATAACCAACCAG GGAGCAGTAATCCGAGGATTAGAAGGCATCTAATGAGGGTTGATAAATCACTCAGCAGGATCTGTTTTTTCCTCTTCTGC TGCATGGTGTTGTGTCTTCTCTTGTTCTGACTGCTACTGTTTCATTTAGTAATAGGAGGTCATTGTATAATGTACATTAG GTGTACTGATACATGTATTCTAGCCAGGGAAGTTGCAGATGATTGCTGAGATATGTGTAATTACCGGCCTCGGTTTGAGC TTATTTGAAGTAGTGTTTGTGCATAAGTTAATTCCCCTTGTTTTTAGTCTATCATGGTTTTAACCTCTCTTTGATTTTTA CCGTGTATTCAAATATGCATGCGTACGGATCGGTGTCAACGAGCATTCAAAAATAGTTGTAGCATATGTTTACTTTAAAA GGCTTACCAACCCCATGTCTCCCTTCTTAATTAGTTTTTGTTTTTGTCAAATCTTAACTCGCTTTTTAACAGGTCAAAAC TGGATAGGTTAGGCATATTTTATCACATCTTGTTCCCTTAACATATTTTATTTAGGTTTAGGATAAGGTATTGGCTTTAG CTTATTAGTAAGGGCAGGCATATAATGGCCGCCATGCCTTATCCATTTACTTGGGTTGGGATGATACAAGTTGCTGTGTG GCTGAACTCCATAATAATAAAAGGCGCCTACTTCACAATTCAAGAGTGATGGTCTTCCATGCAGCAAAGTATAATTAATA GTATTATCAAAAACTTAAAATAACATAATCATAATATATATTTGGTTTACCACTGGATAAAATATATATTGGGATTTGAG AAAATTATATAGTTTTTTTAAGGGAATATTTGATAGGTCCCCGCGGGTCTGATGATACAAAGAAGGTGATGGATGTGGGG TGGGGAGAGGGAGCACTTCCAGTGATCACAGTTGATTTCTTTGTACGATTTTCATTAAAGATGAAAGAGACTCTATGGTC ATTGGTCCCCATTTTTGCTAAGATACAGAGATTGCATTGCATCAAAATATTAATTATATTGTTTTTTTATAGGAATTATT AATTATATTGGAATGCCAGAAAAGTTATTTTTCATATTAAAATAAATTGTCTGTTCGACGCTTATAAAGGCAATCAAGCA TGTAATGGAGATATTTCATTTTCAAACATTAGTTTCTGAGCTGTATATCACAATTCACAAGTTAGGTTGTGGATAAGGCT TCTTTTTTCAATCTTACTTTCTCTGGTCCAGATGACTAGATTTCTGGCTTCATCACATATTGCGGACCCGCTATTTTGTC TTTCTATGTCAAAGTGATTCCAACATGTGTTTTGTCCTATTGGCGTTCAAGTTGAATTTAAGTAGTGTAAGGCAAACAAC GTAAGTTATTCACTGATAACATGGAAGAACAATATTCCACTGAGCACTGATCAAACACAATTAAGAAGAAAATAAGTTGT TTGGTGCCAACTTAAAGGTCCAATACTCTGATTAGTATTCATTCAAGCAAGAAAACTAGGAACTGAAAGATAGATTGCAA GAAACTCAAAAAGATACAAACATAAGCTACTTTTACCTACAAATGTAGATGGTGAAGCATCTCGTGTGGAAGTCTGGATG GTGGGAGGCAATAACGACGACATTTAGAGGGTGGCACAGGGCGGAGAGCGTGGTCAAGAAAGCGAATGAGTTAAGAGAGA AGAGAAACGACGATTTAGACTAGTAGTTCCTGAAATCAAATCCAAGCTTAGTTTTGATTTCAACAATAACCTGATATTCA AGAAGCTTCACCGATTGAACAAGAAGTGTGTTCTTGACAAGACAAGTTTCGCAAAGAGTTCTCCTTCAAGAGCCTAACAA TCAAGCCAACTTTCAAATCTCTCGTAAGATTTGGACATCACTGCTCCAATTTCCAGCATTGTTGAAGGCTTTGCGAAATC AAGCCTAACCCAAAGCTCAACCATTTGAATAAGGCGATGATCGATGCGAGTGTTCCAAGCTCACGCAACAGACAAAACAA GAACGAGGAAGAAAGAAAGGAATAGAAGGAGACTTAGAAGAAGGGAAGGAAAAGGATAATCAACCTCCACAATTGAGAGG AGTGATGGGTTGAAACGTGACTGAGCGGTTAAGGAACGAGGTTGGACTTTGAGTTAGAGGAAATGACAAGGCCACAAGGA CAATGGTGCCCAACGCCAAGAAGATGCTAGAAGGTCGTAGTCAGAGATGATGTGACCATCACAAATAGTTGTGGAGCCAC CTCTTCAGCCCCTCGGAGAAGAGGTGGCTCCAACAACTTGGTGGCGACAGCTGCCGGAGATGGAACATACAGTGAGAGAA GGTAGAGGGAAAGAGAGGATTAGCTACAGTTTACTAAATTGAAAATTAAATCAAATTAAATCTCCACTCACTGAACCGCA ATGATTCAGTTTTATACTGAACCACCAAAGAAAAAGCCGATAAGCGCCCGTTTATTTTACAGTTGATGAAATTACGTTTG ATAAAATTGAAGTTTGAAGAACTAAGTTTAAAAGAATGAATGTGCTCGGAAATGATGTGTAAAAATAAGATTTTAAAAAA TGAATGTTATTTGAATAGAATAAACTCGATAAAGTGATTTTTTTTATAATGGTGAGCTATCAGATCGAGAATGACTAAAA ATGATAATAGATGATAGATATAATATAAATGTGAATGTTAAAATGGGTACTCTGTTCACACTTTATATAGTTTATACACA CTTACTACGAGATTACACTGAGAGTGGAGGAAGAAAAAACTCAAAAAAGAGAGAAAATAGAGATATGATAGGTATTACGA TATGATATGAAAAATAAGAGACATAGGAAAAAAAATGAATGATATAATATGAATGATATAATAAGACACATACTGGCCTT TCCTTTTTGAAATGTTGGCCTATCGTTTATGAAAATTTTAGTTCATGAATCTGAATTGTTCTTGTTGCTAATTTGGGGAT TACAGTGTCACTAAAAAAATCAGATCAAATATCTCAACAGTGCTTTCTTCCGGAGAGTCCTAAGTAAAAAAAGAGGGTTT TCTTTTTTGAAAAATATGGCGTGGTCGGTGGTCCTATAGGTTATTTGCCCTCTTTTTCAGATATTAATTCTATCCTTTAC CAGTTTCACAATTAAAGGCAAGAGAAGTATAAGCAAACATTGAAAGTCAAGTGTGTCCTACATAATTATATCAGCTTGAA CATATCTACAACTACTTTTATGTTCAATTCATTAATCGTTAAGACGTGCAAGCTGTTTCCTGGAAAGAACTCATAATCTT CAAACCTCAAACTGGGATATATTAGTTTTAAAGGACAACTTTATTTAAATTAAACTAATCCAAAGTTAATTAACTGATAA TGCAATTAACTAATTGCAGTGCCTGCTCTTTGCCTAAGAATAAAAGTTTCAGTAGCCACCAAAACAAACAGAAGTCATGA GTTATACGAGTAACCATATAACTGTCTTCTTGACCATAGCTACTGGATGAGATACATGAGGACTAAAGTTACTAGAACGA GATATGCCATTAAAATGATAAAAGCTACCTAAAGTATTAGTAGGGGGTCCAACTCCAAAATGGGATGATGCAGACATGCA ATAATACTATGGTTGCTGTTGAGGCTAAACAAGTGATAGGAGGGAAGTATTTTGGTGGAAAAACAGAACCAGCGTTGTTG TTTTTGTGAAGGCAAAGTTACCGAAACAGGGTGCTTACTTGATGAGTAAAATGGTGATTTAAGAAGTTTGTTGATGTGTG AATTCTAATGAAATGAATGGTTCAGCTTTGTATAACTGGACACAATCCTGCTTCAAATCAAAAGGGAATTTCATGTCAAT TCATTAACTGACCTCTTTCTCGGGCTGCTTTTCATGCTTCTTCTCTCCATCCGGAACGTAAAAGTCCCCTCTCAGACGAT AATCTCCTTTAATCAGATCTAAGGCATTTGTTTCTGGGATTTCCCCATGCATATAGCTTAGTAATTTATCATGGGTGGCA GCAGTGAAATAATCTCGTTCCCCACATATCCTAAGAATCTCTGATGCCAATTCTGAATCTCCCTTCTCTTTCACGTGCTC AATACAGGCAGCAAAAGTAAAAGGGTAAGCCTTCCATCCTGGTCGACCAGCCAAAATTGCTTTCTTCATTGTTTCAAGTG CTTTATCCATATCTTTGCAGCTAGAATAGCCACGAGCCAAACGATCCCACACACTTCCATCTAATTTACTGTCTCTTTCT AAAAGCCTCCCAACATATGCTTCAGCCTTTTCCAACAGGCCATTCTTACAATAAACACTCACCATCACATTTGGAATTCT GAGGTCATGGCGTGAATTTCCAGATTCCCACTCCTCCAGAATCCTCTCAGCTCCATCAATGTCATTCAACCTTGACAATG CAGTTAACATGCAGATGTAACTTGAATTTGGAGTAGAATTATTCAAGTTTTTGCATATGTCCCAAATGCGATACACATCG TCTTTTCCCCCGATAGTACCATACTTAGTTAGAAGAGATTCATAGGCAACCCTGCTCATCTTGCCTGTGATTAATTGCTC TGATTTCTTCAACATTGCCAATGACTTCTCAAATTGGCCAGCTTTAGTATAACCATCTGCTGCAGTACAGTATGTTAACC AGTCCACAGCTGCGGGATCAACTTCCATCTGTGCCAGTATCTTCTCCATCTCATCTATATCATTGATTGTCACACAAACA TTCAGCCAAGTAGTATATGTGACATGGTTGCATAACTCCTTCTCTTTCATTTCTCGCATCAAATCATGCAATTTCTCATA TTGACCTGTCCGAGCATAGAGTTTCATCATAACATTATAACTCAATACTGCACCCGTTGCCTGCATGGAGGGGTCTTCTT TCATTTTCTGCATGATAGCCTCCGCCTTCTCCACGGCGTTGTGTTGCGCATAGCCATTCAAAAGAGCACCATAGACCTTG AAATCTCTTGAAGTATCTGGGATGCTATTAAAATATTTCTCTGCTTCTTCTAGGCTCCGAACTTTAGATATCAAGTCGAG ACGTATAGCAATGTCTCCAGAGTATAAATGAAGGTTCCTTTCATTACTCATCCATTCTGATATCTGGCACCAGCAAAACA ACAAGTTAAGTAACTAATTTTTTTTCTGTTTCCCAAGATACCCCAACAACCCGCAACCATAAGACTAATCCCCCGAGGCT CTGAGATCAAGTTAAGTGGGTAGGC
CDS sequence (LotjaGi3g1v0454700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCTTAGATGCATACTTGGAGGAGACTATGTCTCAAATTGATTCCTTTGAAGATAGACCATCTTTGGAAAAATGGAA ATCCTCCACTGATTTCATTGCAGAGTCTGATAGAACTTCCTCTGGTGGCTTTGACTGCAACATCTGCCTAGACTGTGTTC AAGATCCAGTGGTCACTCTCTGTGGCCATCTTTACTGCTGGCCCTGCATTTACAAATGGCTTAATTCGAATAGCGCTTCT TCAGAAAACGTGGAGCAGAATAAGCCACAATGTCCAGTGTGCAAATCAGAAGTTTCTCAATCCTCACTAGTTCCATTGTA TGGCCGTGGCCAAACCACAATAGCTTCTAAAAACAAGGCTTATCAACAAGTTGGGAGTGTCATCCCAAGAAGACCCTTGG GTCCCATATTGTATAATGCTACATCAACTGCTTCCGAACCAACTTTTCAAAGTAACCAGCATTTCCATGATCCTTATCAT CGTCATCATCATCATCATCATCATCAAATGTTCAACTCAATTCCAAGCAGTTATAGTACCTCACCAATGTTTAGCACAAG TGGTTCACTTGATAACACGTTTGGGATCTTTGGTGAGATGATGTATGCAACGGTGTTTGGGAACCAGGTGTCAAACATGT ACTCGTATAACCAACCAGGGAGCAGTAATCCGAGGATTAGAAGGCATCTAATGAGGGTTGATAAATCACTCAGCAGGATC TGTTTTTTCCTCTTCTGCTGCATGGTGTTGTGTCTTCTCTTGTTCTGA
Protein sequence (LotjaGi3g1v0454700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MALDAYLEETMSQIDSFEDRPSLEKWKSSTDFIAESDRTSSGGFDCNICLDCVQDPVVTLCGHLYCWPCIYKWLNSNSAS SENVEQNKPQCPVCKSEVSQSSLVPLYGRGQTTIASKNKAYQQVGSVIPRRPLGPILYNATSTASEPTFQSNQHFHDPYH RHHHHHHHQMFNSIPSSYSTSPMFSTSGSLDNTFGIFGEMMYATVFGNQVSNMYSYNQPGSSNPRIRRHLMRVDKSLSRI CFFLFCCMVLCLLLF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 235 | 235 | - | – | |
| PANTHER | 17 | 248 | 232 | 3.6E-86 | – | |
| PANTHER | 17 | 248 | 232 | 3.6E-86 | – | |
| Gene3D | 27 | 126 | 100 | 1.3E-18 | ||
| CDD | 44 | 96 | 53 | 7.8467E-25 | – | |
| SUPERFAMILY | 45 | 101 | 57 | 1.21E-17 | – | |
| SMART | 46 | 94 | 49 | 1.7E-9 | ||
| ProSiteProfiles | 46 | 95 | 50 | 12.711 | ||
| Pfam | 46 | 94 | 49 | 1.9E-8 | ||
| ProSitePatterns | 61 | 70 | 10 | - | ||
| TMHMM | 236 | 254 | 19 | - | – | |
| Phobius | 236 | 254 | 19 | - | – | |
| Phobius | 255 | 255 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. |
Expression pattern of LotjaGi3g1v0454700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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