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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0475300 |
| Transcript ID | LotjaGi3g1v0475300.1 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Vesicle-associated membrane protein, putative; TAIR: AT5G22360.1 vesicle-associated membrane protein 714; Swiss-Prot: sp|Q9FMR5|VA714_ARATH Vesicle-associated membrane protein 714; TrEMBL-Plants: tr|V7AFW3|V7AFW3_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0475300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:89204846..89208590) extracted from Lotus japonicus Gifu genome v1.2.
CCTCTTCTCCCTTATCATTCCCACTCTAACTTGGGTGTTGGACTGTGTACACTCATTCATCCATTGTTTTTCCTGCCTCA ACAAAAATTCAGTAAAAGAAATTCTGTTTTTTCGATTTCAATTTTTTTGTTATCGTTTTTTAAATTTTTAATGGATGGAA TTAAATTTAAAAAGAATATCAATTCAATATTACAACCTCAAAAGCGTTTTGTTTGTCGTTAGTTTTCCATGGGAACTCGA AGATCTAGCTAGAAGCCAAAACAAAAAGTCTTCAACGATGGCGATCCTATACGCTTTGGTGGCCAGGGGCACGGTGGTGC TGGCGGAGTTCAGCGCCGTCACCGGCAACACAGGCGCCGTCGCCCGCCGTATAATCGAGAAGCTTCCGGAGGAGTCCGAC TCCCGCCTTTGCTTCTCTCAGGATCGCTACATCTTTCACATACTCCGATCCGATGGCCTCACCTACCTCTGTATGGCCAA CGACACCTTCGGAAGTGAGTACTTACACTTCTTCTCTCCGTTCACTCCTTCTTAATTTCATCGCTACACGATCTGCTACA GAATCGTGTTTTAGATGCTAGTTTGAATTTCTTGAGTAATATTGCTTGGACCAATTGTTCAGCATAAGCTTTTGTTTTCG TTTGAAGTACCAAAATTGAGAACGAATTGAAGAAATTCTAAGGCAAATAATGAGAATTGTGATTTGTGCTGAAATAAGTG GGTGGAAGTAGCATTACTCTTTCCATGAAGGAATTAGGGTTCGTCTTGATATCTTTGATTACAGATATTTGTTCTTAAGA ACAGAGAATTTTGATATTTGGTTGCTTTTGTGTACATATTTGTTTCAAGTTTTTAATGAATAAATAAATTTAGATTTTAG AATAATGGCATTGGTCTATGAAATCGAATAAAGCTGTGATTGAAGCGTGTGAGCTTGTATCTGATCATCGGTTAGGAAAT TCAATTGTAGTGCAGAGAGATGTTCTTGAGAGTAGTTTGCTGGTTTAGGTAAATGTTGGGGAATGATATCGTGTTTGATA GATAGCTAGTATGAGTTCCTCAGTTGTTCATGTTTCCCTCAATTGACATTGTGGTGGCACGATGTCTAACACAGTCAATG CTTTTGAAAGACTCTTTTTGGTTAGGAAATTTCTGGGAGCGAAGTCTATGAACGGTCATCCACTGTAGGAATAGGAACCA TGTGAGTTTTCAAAACATGATCGAAACTCTGCCTGTTGTCAAAATAGACTATCTCTGAATTCTGATCAAAATGTTATGAG TTATGATATCCTCTCTAAAGTCAAATCTATACTTGGTTTTGAACTTTTTTTATAATTAAGTAACTGGTATGAGGAAGTCC TTTAGCTGTATATTTGGACAGACAAAGTGATAAATTCCAGAACCAGCCAGCAGAGGCCAAGTGCCATCTTGATGTCTCGT ACATATAAGTCTTTTACTGTATCACATGAGGTTTTCTTCAAAAGTTATATGTATGGATTCTATTTATCCTGCAATAGAGA AGCGTTAGCATTATTTTTCAAAGCTTTTGAAACTTTAAGGCAATCCTCCATGTCAAGTTCAATAGTTTGCTTCTTTCACT GTAAGAAAACAAGCGCCAATTTGATTATTGATTTTTAAGAACAGTTTTTTTCCCAATAACTATAACACAATCCATTTTAT TTTCACTTTTTATCTGATTGATTTGAAAACTTGTTCTCCCTATTCAGTTTTTAGAGTTGACTCTTGAAAACACAATTTAG TTAGTTTGTTTTCTTTAACTTTTTTTCATGAATTCTCTATTCTCACATCAAACTACCACTATCAGAGAAGATAGACTTCA CCAGTGGTTTATGTTATATATTCACTACAGCAGTAGTTCCCTAAATTTAATCTTTACTTGTCCTCCAAGCTGTAGTTGAA GTTTTCCACTTTTTTTTTGAAAAGAGAATGGCTGTAAAAACTAATTAGGAGGATTAGTTGTTTATCTCTGCATCAACAAT AATCACTAACTACTGATTAATAAGAAAGTTGTAATTTGTCATGCTGTTTTAACTTTTAACCTTTGTTACTGTTTTCACGT GCTTACTATGTTCCATTTTCTCTTTATCCAGGGAGAATTCCTTTCTCATACTTAGAAGATATCCAAATGAGGTTTATGAA GAACTACGGTAGAGTTGCCAATTATTCACCAGCTTATGCAATGAATGATGAGTTTTCAAGGGTTTTGCATCAGCAAATGG AATTTTTCTCTAGTAATCCTAGTGTTGATGCCCTAAATCGTGTGAGGGGTGAAGTTAGTGAGGCAAGTACATTTCAAAGA AAAATTTGTCCATCTTATGTGTTCTTTTCATTTTATTTATCTAGTACATAGTGAGAACTGAGAACAGAACACCACATAAG CTAATCAAGTTTCATATAATATATGTGAAATTGTGCTCTGGTTTATTTAATATCCAACTCTGTTTTCTGTTGATGAATTT CCCTTCTTCCTAGGTATGGGCTGCAAGTGACAGACAACTCTGCTTAACATATAATCTTGTTTACATAACGACAACAATCC ATCTAATTTTGGAACCAAAAAAGAACACAATTGTAATAGTGCGATCACAATAATTTTGTTGTTTCCCCCATTTTTACCTT CAGCAGAAATGAGTGTTTGTTATATGTAGGATTTATCTTTTTAAAAGTTGGTAAGCTGAACAGAAGTGGTATACCTCTTT ACTTGAATTGTTTCAGTGCCTCTCTATTCTCTAATGAGTGATGTTGATGACCCAGAGTCCTTATTAGTGAAGTTATTTAT CTTTCTTTCTGGAAATCATTAATATTGACTCTTTGCAACATGATTTTGAAGAGTGTCGTATTGGATTTCAAGTTGTATAG ATTCTGTTAATGTTACATTATCATGCTATGACTATTTAAATCCTTTCACTTAGTTGGTGACATTAGAACTTTCAATCTGT CATACAGATACGCACTATCATGGTGGACAATATTGAGAAAATATTGGAGAGAGGTGACCGGATTGAGCTTCTCGTTGATA AGACAGCAACAATGCAAGACAATTCATTTCACTTTAGGAAACAGTCAAAGCGCCTTCGAAGAGCGCTATGGATGAAAAAT TTCAAGCTCCTGTGAGTAAATTTTCTTTGATATGCTGAATATAAATAATATATATTTCAAAAGTATTCATTTTAGATATG GGGTACCTGAAGTTGTTTATATTTATCTTGGAATGCAACAATGGGCTTATTGCTCTTCTATCCTTGTCTTGACTTGATGT TTTTTTGGTCTTTGACAGCGCATTATTGACATGCTTGATTGTTCTCATTCTTTACTTCATAATCGCTGCTTGTTGCGGAG GCATCACTCTACCATCCTGCAGATCCTAATTGTCACTCCTTGCTGGTTTATATATTTTCCAAGTTCTGCAACAATCAAGA TGATTCCTGTCAATATGTACATTGGAGGGCTCTTCAGTATTACAGAATCAAATTAAGAGCTGAGTGGGAAAATTTGGTAA AGGGTCCAAAAACAGTCACGTATTTATTGCTTTGTTCTTTATTCTGTATTATAAAAGTACGCTGGAGCCTGGTAAGGTGC TATTCTATGATTATTGAGCATCCTTTTGTAAATGTGATTTTTGTACTATCTTTAATAATCTAGGTTTAAATTATTATATC TTTTTTTTAAATAATGCTATTTACTGGCTTACATTATGGAAGTTTTTATGTTTATTGTGTATGTG
CDS sequence (LotjaGi3g1v0475300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAATTAAATTTAAAAAGAATATCAATTCAATATTACAACCTCAAAAGCGTTTTGTTTGTCGTTAGTTTTCCATGGGA ACTCGAAGATCTAGCTAGAAGCCAAAACAAAAAGTCTTCAACGATGGCGATCCTATACGCTTTGGTGGCCAGGGGCACGG TGGTGCTGGCGGAGTTCAGCGCCGTCACCGGCAACACAGGCGCCGTCGCCCGCCGTATAATCGAGAAGCTTCCGGAGGAG TCCGACTCCCGCCTTTGCTTCTCTCAGGATCGCTACATCTTTCACATACTCCGATCCGATGGCCTCACCTACCTCTGTAT GGCCAACGACACCTTCGGAAGGAGAATTCCTTTCTCATACTTAGAAGATATCCAAATGAGGTTTATGAAGAACTACGGTA GAGTTGCCAATTATTCACCAGCTTATGCAATGAATGATGAGTTTTCAAGGGTTTTGCATCAGCAAATGGAATTTTTCTCT AGTAATCCTAGTGTTGATGCCCTAAATCGTGTGAGGGGTGAAGTTAGTGAGATACGCACTATCATGGTGGACAATATTGA GAAAATATTGGAGAGAGGTGACCGGATTGAGCTTCTCGTTGATAAGACAGCAACAATGCAAGACAATTCATTTCACTTTA GGAAACAGTCAAAGCGCCTTCGAAGAGCGCTATGGATGAAAAATTTCAAGCTCCTCGCATTATTGACATGCTTGATTGTT CTCATTCTTTACTTCATAATCGCTGCTTGTTGCGGAGGCATCACTCTACCATCCTGCAGATCCTAA
Protein sequence (LotjaGi3g1v0475300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MELNLKRISIQYYNLKSVLFVVSFPWELEDLARSQNKKSSTMAILYALVARGTVVLAEFSAVTGNTGAVARRIIEKLPEE SDSRLCFSQDRYIFHILRSDGLTYLCMANDTFGRRIPFSYLEDIQMRFMKNYGRVANYSPAYAMNDEFSRVLHQQMEFFS SNPSVDALNRVRGEVSEIRTIMVDNIEKILERGDRIELLVDKTATMQDNSFHFRKQSKRLRRALWMKNFKLLALLTCLIV LILYFIIAACCGGITLPSCRS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 230 | 230 | - | – | |
| Gene3D | 28 | 165 | 138 | 5.2E-47 | – | |
| PANTHER | 42 | 260 | 219 | 7.8E-96 | – | |
| PANTHER | 42 | 260 | 219 | 7.8E-96 | – | |
| SUPERFAMILY | 44 | 159 | 116 | 1.69E-31 | ||
| CDD | 45 | 159 | 115 | 1.60723E-32 | – | |
| ProSiteProfiles | 48 | 152 | 105 | 33.056 | ||
| SMART | 69 | 151 | 83 | 9.2E-29 | ||
| Pfam | 70 | 149 | 80 | 1.1E-23 | ||
| SUPERFAMILY | 162 | 229 | 68 | 2.67E-20 | – | |
| Pfam | 165 | 252 | 88 | 4.2E-30 | ||
| CDD | 166 | 225 | 60 | 1.41427E-25 | – | |
| Gene3D | 166 | 250 | 85 | 4.2E-25 | – | |
| ProSiteProfiles | 167 | 227 | 61 | 17.911 | ||
| PRINTS | 172 | 191 | 20 | 2.3E-12 | ||
| ProSitePatterns | 185 | 204 | 20 | - | ||
| PRINTS | 192 | 211 | 20 | 2.3E-12 | ||
| PRINTS | 228 | 247 | 20 | 2.3E-12 | ||
| Phobius | 231 | 256 | 26 | - | – | |
| TMHMM | 232 | 254 | 23 | - | – | |
| Phobius | 257 | 261 | 5 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Vesicle-mediated transport | A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane. |
Expression pattern of LotjaGi3g1v0475300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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