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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0475300 |
| Transcript ID | LotjaGi3g1v0475300.4 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Vesicle-associated membrane protein, putative; TAIR: AT5G22360.1 vesicle-associated membrane protein 714; Swiss-Prot: sp|Q9FMR5|VA714_ARATH Vesicle-associated membrane protein 714; TrEMBL-Plants: tr|V7AFW3|V7AFW3_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0475300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:89205202..89208313) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCGATCCTATACGCTTTGGTGGCCAGGGGCACGGTGGTGCTGGCGGAGTTCAGCGCCGTCACCGGCAACACAGGCGC CGTCGCCCGCCGTATAATCGAGAAGCTTCCGGAGGAGTCCGACTCCCGCCTTTGCTTCTCTCAGGATCGCTACATCTTTC ACATACTCCGATCCGATGGCCTCACCTACCTCTGTATGGCCAACGACACCTTCGGAAGTGAGTACTTACACTTCTTCTCT CCGTTCACTCCTTCTTAATTTCATCGCTACACGATCTGCTACAGAATCGTGTTTTAGATGCTAGTTTGAATTTCTTGAGT AATATTGCTTGGACCAATTGTTCAGCATAAGCTTTTGTTTTCGTTTGAAGTACCAAAATTGAGAACGAATTGAAGAAATT CTAAGGCAAATAATGAGAATTGTGATTTGTGCTGAAATAAGTGGGTGGAAGTAGCATTACTCTTTCCATGAAGGAATTAG GGTTCGTCTTGATATCTTTGATTACAGATATTTGTTCTTAAGAACAGAGAATTTTGATATTTGGTTGCTTTTGTGTACAT ATTTGTTTCAAGTTTTTAATGAATAAATAAATTTAGATTTTAGAATAATGGCATTGGTCTATGAAATCGAATAAAGCTGT GATTGAAGCGTGTGAGCTTGTATCTGATCATCGGTTAGGAAATTCAATTGTAGTGCAGAGAGATGTTCTTGAGAGTAGTT TGCTGGTTTAGGTAAATGTTGGGGAATGATATCGTGTTTGATAGATAGCTAGTATGAGTTCCTCAGTTGTTCATGTTTCC CTCAATTGACATTGTGGTGGCACGATGTCTAACACAGTCAATGCTTTTGAAAGACTCTTTTTGGTTAGGAAATTTCTGGG AGCGAAGTCTATGAACGGTCATCCACTGTAGGAATAGGAACCATGTGAGTTTTCAAAACATGATCGAAACTCTGCCTGTT GTCAAAATAGACTATCTCTGAATTCTGATCAAAATGTTATGAGTTATGATATCCTCTCTAAAGTCAAATCTATACTTGGT TTTGAACTTTTTTTATAATTAAGTAACTGGTATGAGGAAGTCCTTTAGCTGTATATTTGGACAGACAAAGTGATAAATTC CAGAACCAGCCAGCAGAGGCCAAGTGCCATCTTGATGTCTCGTACATATAAGTCTTTTACTGTATCACATGAGGTTTTCT TCAAAAGTTATATGTATGGATTCTATTTATCCTGCAATAGAGAAGCGTTAGCATTATTTTTCAAAGCTTTTGAAACTTTA AGGCAATCCTCCATGTCAAGTTCAATAGTTTGCTTCTTTCACTGTAAGAAAACAAGCGCCAATTTGATTATTGATTTTTA AGAACAGTTTTTTTCCCAATAACTATAACACAATCCATTTTATTTTCACTTTTTATCTGATTGATTTGAAAACTTGTTCT CCCTATTCAGTTTTTAGAGTTGACTCTTGAAAACACAATTTAGTTAGTTTGTTTTCTTTAACTTTTTTTCATGAATTCTC TATTCTCACATCAAACTACCACTATCAGAGAAGATAGACTTCACCAGTGGTTTATGTTATATATTCACTACAGCAGTAGT TCCCTAAATTTAATCTTTACTTGTCCTCCAAGCTGTAGTTGAAGTTTTCCACTTTTTTTTTGAAAAGAGAATGGCTGTAA AAACTAATTAGGAGGATTAGTTGTTTATCTCTGCATCAACAATAATCACTAACTACTGATTAATAAGAAAGTTGTAATTT GTCATGCTGTTTTAACTTTTAACCTTTGTTACTGTTTTCACGTGCTTACTATGTTCCATTTTCTCTTTATCCAGGGAGAA TTCCTTTCTCATACTTAGAAGATATCCAAATGAGGTTTATGAAGAACTACGGTAGAGTTGCCAATTATTCACCAGCTTAT GCAATGAATGATGAGTTTTCAAGGGTTTTGCATCAGCAAATGGAATTTTTCTCTAGTAATCCTAGTGTTGATGCCCTAAA TCGTGTGAGGGGTGAAGTTAGTGAGGCAAGTACATTTCAAAGAAAAATTTGTCCATCTTATGTGTTCTTTTCATTTTATT TATCTAGTACATAGTGAGAACTGAGAACAGAACACCACATAAGCTAATCAAGTTTCATATAATATATGTGAAATTGTGCT CTGGTTTATTTAATATCCAACTCTGTTTTCTGTTGATGAATTTCCCTTCTTCCTAGGTATGGGCTGCAAGTGACAGACAA CTCTGCTTAACATATAATCTTGTTTACATAACGACAACAATCCATCTAATTTTGGAACCAAAAAAGAACACAATTGTAAT AGTGCGATCACAATAATTTTGTTGTTTCCCCCATTTTTACCTTCAGCAGAAATGAGTGTTTGTTATATGTAGGATTTATC TTTTTAAAAGTTGGTAAGCTGAACAGAAGTGGTATACCTCTTTACTTGAATTGTTTCAGTGCCTCTCTATTCTCTAATGA GTGATGTTGATGACCCAGAGTCCTTATTAGTGAAGTTATTTATCTTTCTTTCTGGAAATCATTAATATTGACTCTTTGCA ACATGATTTTGAAGAGTGTCGTATTGGATTTCAAGTTGTATAGATTCTGTTAATGTTACATTATCATGCTATGACTATTT AAATCCTTTCACTTAGTTGGTGACATTAGAACTTTCAATCTGTCATACAGATACGCACTATCATGGTGGACAATATTGAG AAAATATTGGAGAGAGGTGACCGGATTGAGCTTCTCGTTGATAAGACAGCAACAATGCAAGACAATTCATTTCACTTTAG GAAACAGTCAAAGCGCCTTCGAAGAGCGCTATGGATGAAAAATTTCAAGCTCCTGTGAGTAAATTTTCTTTGATATGCTG AATATAAATAATATATATTTCAAAAGTATTCATTTTAGATATGGGGTACCTGAAGTTGTTTATATTTATCTTGGAATGCA ACAATGGGCTTATTGCTCTTCTATCCTTGTCTTGACTTGATGTTTTTTTGGTCTTTGACAGCGCATTATTGACATGCTTG ATTGTTCTCATTCTTTACTTCATAATCGCTGCTTGTTGCGGAGGCATCACTCTACCATCCTGCAGATCCTAA
CDS sequence (LotjaGi3g1v0475300.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGATCCTATACGCTTTGGTGGCCAGGGGCACGGTGGTGCTGGCGGAGTTCAGCGCCGTCACCGGCAACACAGGCGC CGTCGCCCGCCGTATAATCGAGAAGCTTCCGGAGGAGTCCGACTCCCGCCTTTGCTTCTCTCAGGATCGCTACATCTTTC ACATACTCCGATCCGATGGCCTCACCTACCTCTGTATGGCCAACGACACCTTCGGAAGGAGAATTCCTTTCTCATACTTA GAAGATATCCAAATGAGGTTTATGAAGAACTACGGTAGAGTTGCCAATTATTCACCAGCTTATGCAATGAATGATGAGTT TTCAAGGGTTTTGCATCAGCAAATGGAATTTTTCTCTAGTAATCCTAGTGTTGATGCCCTAAATCGTGTGAGGGGTGAAG TATGGGCTATACGCACTATCATGGTGGACAATATTGAGAAAATATTGGAGAGAGGTGACCGGATTGAGCTTCTCGTTGAT AAGACAGCAACAATGCAAGACAATTCATTTCACTTTAGGAAACAGTCAAAGCGCCTTCGAAGAGCGCTATGGATGAAAAA TTTCAAGCTCCTCGCATTATTGACATGCTTGATTGTTCTCATTCTTTACTTCATAATCGCTGCTTGTTGCGGAGGCATCA CTCTACCATCCTGCAGATCCTAA
Protein sequence (LotjaGi3g1v0475300.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAILYALVARGTVVLAEFSAVTGNTGAVARRIIEKLPEESDSRLCFSQDRYIFHILRSDGLTYLCMANDTFGRRIPFSYL EDIQMRFMKNYGRVANYSPAYAMNDEFSRVLHQQMEFFSSNPSVDALNRVRGEVWAIRTIMVDNIEKILERGDRIELLVD KTATMQDNSFHFRKQSKRLRRALWMKNFKLLALLTCLIVLILYFIIAACCGGITLPSCRS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 189 | 189 | - | – | |
| SignalP_EUK | 1 | 16 | 16 | - | – | |
| Gene3D | 1 | 124 | 124 | 3.6E-46 | – | |
| PANTHER | 1 | 219 | 219 | 6.2E-95 | – | |
| PANTHER | 1 | 219 | 219 | 6.2E-95 | – | |
| SUPERFAMILY | 3 | 118 | 116 | 1.1E-31 | ||
| CDD | 4 | 118 | 115 | 1.90016E-33 | – | |
| ProSiteProfiles | 7 | 111 | 105 | 33.056 | ||
| SMART | 28 | 110 | 83 | 9.2E-29 | ||
| Pfam | 29 | 108 | 80 | 7.5E-24 | ||
| SUPERFAMILY | 121 | 188 | 68 | 3.77E-19 | – | |
| Pfam | 124 | 211 | 88 | 9.0E-29 | ||
| Gene3D | 125 | 209 | 85 | 5.3E-24 | – | |
| CDD | 125 | 184 | 60 | 1.19612E-24 | – | |
| ProSiteProfiles | 126 | 186 | 61 | 16.781 | ||
| PRINTS | 131 | 150 | 20 | 1.0E-10 | ||
| ProSitePatterns | 144 | 163 | 20 | - | ||
| PRINTS | 151 | 170 | 20 | 1.0E-10 | ||
| PRINTS | 187 | 206 | 20 | 1.0E-10 | ||
| Phobius | 190 | 215 | 26 | - | – | |
| TMHMM | 191 | 213 | 23 | - | – | |
| Phobius | 216 | 220 | 5 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Vesicle-mediated transport | A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane. |
Expression pattern of LotjaGi3g1v0475300.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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