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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0489400 |
| Transcript ID | LotjaGi3g1v0489400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cysteine protease, putative; TAIR: AT5G45890.1 senescence-associated gene 12; Swiss-Prot: sp|A2XQE8|SAG39_ORYSI Senescence-specific cysteine protease SAG39; TrEMBL-Plants: tr|A4PIZ2|A4PIZ2_LOTJA Cysteine proteinase; Found in the gene: LotjaGi3g1v0489400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:90726812..90728421) extracted from Lotus japonicus Gifu genome v1.2.
GTTTTCCCTCACTGCCATGGCTTCCAAAACTGTACTAAACATCTCTTCATTAGCTTTGCTTCATGTGTTTGGATTCTTGG CTTTTGAGGCAAATGCTCGTACCCTCGAAGATGTTTCAATGAAAGAGAGGCATGAGCAATGGATGACTCAGTATGGAAAA GTTTACACGGACTCTTATGAGAAAGAATTGCGGTCCAATATATTCAAAGAAAACGTTCAACGCATAGAAGCCTTTAACAA TGCTGGAAACAAGCCTTACAAGCTAGGCATCAACCAATTTGCTGATCTCACAAATGAGGAATTCAAAGCCAGAAACAGAT TCAAGGGTCACATGTGCTCCAATTCAACAAGGACACCAACATTCAAGTATGAAGATGTGTCTTCAGTGCCCGCTTCATTA GATTGGAGACAGAAAGGAGCTGTCACACCTATTAAGGACCAAGGCCAATGTGGTATGTGTCCTGAACCAACTAACAAAAG TTTAAACTGTTGGGGAAAACATATAAATCATTTTATATTATACTTTTAACACGTCTCCTCACGCAAGAGCCCATTGGGCT TGAAGCGTGAACGAATACACAAATTCACCTACCTTAAGCTCAAACTCAACTTTTTTTATTAGAATAATGAGGGATACAAA AATCGAACTTTGGACCGCTTGATCATACATGCTTGATGCTCCGATACCATGTCATGAATCAATTATCCCAAAAGTTTAAA CTGACTGGGTTAAAACACATAGATAACTTTTATATTATATTTCTAATAGTACATGTTTGTTTAATAGTTCTTTGGAACTC ACAAAAAATCAAGAGTGAAGTGTGTGTTTCATAATTAACTCTGCTTTTGTAACTTGTTGTTTAGGATGTTGCTGGGCATT TTCTGCTGTGGCAGCCACAGAAGGAATCACCAAGTTGAGTACCGGAAAATTGATCTCTTTATCAGAGCAAGAGCTAGTTG ATTGTGACACAAAGGGTGTGGACCAAGGTTGTGAAGGGGGTCTAATGGATGATGCCTTCAAATTTATCATGCAAAACAAA GGACTCAACACGGAATCCAAGTACCCATACAAGGGTGTTGATGCAACATGCAATGCAAATGCAGAAGCCAAAGATGCAGC AAGCATTAAGGGGTTTGAGGATGTCCCTGCCAACAGTGAGAGTGCACTGCTCAAAGCTGTTGCTAATCAACCTATTTCTG TGGCTATTGATGCTAGTGGATCCGAGTTTCAATTTTATTCTAGTGGTGTCTTCACTGGATCATGTGGCACTGAGTTGGAT CATGGTGTCACTGCTGTAGGGTATGGAAGTGATGGTGGAACCAAATATTGGTTGGTCAAGAATTCATGGGGAGAACAGTG GGGCGAACAAGGATACATTAGGATGCAGAGAGATGTTGCTGCTGAAGAAGGCTTGTGCGGCATTGCAATGCAAGCTTCTT ACCCCACTGCATAATGTTAAAATTTTCTACTAAACTACATGTAATAGGTTTGAGTGGCTTACAAGAAATTATAGGTTCAA ACCTTGTGTAAGAAAACTATGTAATTATAATTATACGTGTTTAATATATATACAAAAAGGTAAACTATACTGTACATTGC TCACTTCCTG
CDS sequence (LotjaGi3g1v0489400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCCAAAACTGTACTAAACATCTCTTCATTAGCTTTGCTTCATGTGTTTGGATTCTTGGCTTTTGAGGCAAATGC TCGTACCCTCGAAGATGTTTCAATGAAAGAGAGGCATGAGCAATGGATGACTCAGTATGGAAAAGTTTACACGGACTCTT ATGAGAAAGAATTGCGGTCCAATATATTCAAAGAAAACGTTCAACGCATAGAAGCCTTTAACAATGCTGGAAACAAGCCT TACAAGCTAGGCATCAACCAATTTGCTGATCTCACAAATGAGGAATTCAAAGCCAGAAACAGATTCAAGGGTCACATGTG CTCCAATTCAACAAGGACACCAACATTCAAGTATGAAGATGTGTCTTCAGTGCCCGCTTCATTAGATTGGAGACAGAAAG GAGCTGTCACACCTATTAAGGACCAAGGCCAATGTGGATGTTGCTGGGCATTTTCTGCTGTGGCAGCCACAGAAGGAATC ACCAAGTTGAGTACCGGAAAATTGATCTCTTTATCAGAGCAAGAGCTAGTTGATTGTGACACAAAGGGTGTGGACCAAGG TTGTGAAGGGGGTCTAATGGATGATGCCTTCAAATTTATCATGCAAAACAAAGGACTCAACACGGAATCCAAGTACCCAT ACAAGGGTGTTGATGCAACATGCAATGCAAATGCAGAAGCCAAAGATGCAGCAAGCATTAAGGGGTTTGAGGATGTCCCT GCCAACAGTGAGAGTGCACTGCTCAAAGCTGTTGCTAATCAACCTATTTCTGTGGCTATTGATGCTAGTGGATCCGAGTT TCAATTTTATTCTAGTGGTGTCTTCACTGGATCATGTGGCACTGAGTTGGATCATGGTGTCACTGCTGTAGGGTATGGAA GTGATGGTGGAACCAAATATTGGTTGGTCAAGAATTCATGGGGAGAACAGTGGGGCGAACAAGGATACATTAGGATGCAG AGAGATGTTGCTGCTGAAGAAGGCTTGTGCGGCATTGCAATGCAAGCTTCTTACCCCACTGCATAA
Protein sequence (LotjaGi3g1v0489400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASKTVLNISSLALLHVFGFLAFEANARTLEDVSMKERHEQWMTQYGKVYTDSYEKELRSNIFKENVQRIEAFNNAGNKP YKLGINQFADLTNEEFKARNRFKGHMCSNSTRTPTFKYEDVSSVPASLDWRQKGAVTPIKDQGQCGCCWAFSAVAATEGI TKLSTGKLISLSEQELVDCDTKGVDQGCEGGLMDDAFKFIMQNKGLNTESKYPYKGVDATCNANAEAKDAASIKGFEDVP ANSESALLKAVANQPISVAIDASGSEFQFYSSGVFTGSCGTELDHGVTAVGYGSDGGTKYWLVKNSWGEQWGEQGYIRMQ RDVAAEEGLCGIAMQASYPTA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 27 | 27 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 27 | 27 | - | – | |
| SignalP_EUK | 1 | 27 | 27 | - | – | |
| Phobius | 1 | 11 | 11 | - | – | |
| PANTHER | 11 | 340 | 330 | 2.4E-164 | – | |
| PANTHER | 11 | 340 | 330 | 2.4E-164 | – | |
| Phobius | 12 | 23 | 12 | - | – | |
| Gene3D | 21 | 341 | 321 | 6.4E-120 | – | |
| Phobius | 24 | 27 | 4 | - | – | |
| Phobius | 28 | 341 | 314 | - | – | |
| SUPERFAMILY | 32 | 340 | 309 | 6.44E-112 | ||
| Pfam | 39 | 96 | 58 | 2.3E-18 | ||
| SMART | 39 | 96 | 58 | 6.8E-26 | ||
| SMART | 124 | 340 | 217 | 5.6E-125 | ||
| Pfam | 124 | 340 | 217 | 3.1E-83 | ||
| CDD | 125 | 339 | 215 | 6.28636E-115 | ||
| PRINTS | 142 | 157 | 16 | 9.0E-10 | ||
| ProSitePatterns | 142 | 153 | 12 | - | ||
| ProSitePatterns | 283 | 293 | 11 | - | ||
| PRINTS | 285 | 295 | 11 | 9.0E-10 | ||
| PRINTS | 300 | 306 | 7 | 9.0E-10 | ||
| ProSitePatterns | 300 | 319 | 20 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Proteolysis | The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. | ||
| Molecular function | Cysteine-type peptidase activity | Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile. |
Expression pattern of LotjaGi3g1v0489400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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