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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0500600 |
| Transcript ID | LotjaGi3g1v0500600.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Calreticulin; TAIR: AT1G08450.1 calreticulin 3; Swiss-Prot: sp|O04153|CALR3_ARATH Calreticulin-3; TrEMBL-Plants: tr|I3SD85|I3SD85_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0500600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:91879160..91886842) extracted from Lotus japonicus Gifu genome v1.2.
CTTAATTATCCGCTACATTTTCATAGACGATTATCAAAACTCGTTCTCATGATTAAGGAACAAAGTGAATTAACCACGCC TAAGACACATTTTCTCTTAACTTTAGTATATAACTACTAGTATTTTAATGTATCAAGATGATGTTCTAGAAAGTGGTATT ACTATATTAACTTTGACATGTTTCAATTTACATTAATTGTGTTCATCTGTGCACTCTTTCCAACTCCAATTTGAAGCATC TTCTTCTTCAGTTCCCACCATTGTCAGTCAGTGAAGAAGGAATGAGATGGGTAACACCAATCTTGTTCAACTCCTGCTTC TACTTCTTCTAACTCTTCACTCTTCCTTCGCCGAGGTTTTTTTTGAAGAGAGATTCGAAGGTAATCAATCCTGTTCCTCC ATTCACCTTAGATTCCTCAATAGGTTCCTCGTAGATTTCTTAAGATTCCAACCTTGAATTTCTTAGATTCTTTTTGTATT TGGTGCATGTAGCTTCCAACAGGATAATCAGCAATGTTTTCTATTAATTTTTTTTTCTGTAATGTTGTGTTTGCTTCAGT TTCAGTTAGTTTGATTGATTTTATAGCAAAAATGATTACTTTTCTAACTAGTTGACATGGGTTCATGTGGAATAAACATA GATGGATGGAAGAGCCGTTGGGTTTTGTCAGATTGGAAAAGAAGTGAAGGAAAGGCGGGTACTTTTAAGTACACGGCAGG AAAATGGCCTGGAGATCCTGATGATAAAGGTATTCAGTTCACATCTGTAATCTGTAGATTATTTCATTTGGCATTGAATT GATTAATGTAATAAGTGATTTTACTCAAAGAATGCTAAAAATGCTCTATTTTTAAAAGTTTATGATCAGTTTCACTTTTC ATTGTGTATTAGAGATATGTGAAGTCGCGTATGCCTTGATTGAAGCAGGAAAACATTCACACTCTAAGTGCATGTTTGAA AGTCCTTCTATAATTGATTTTAAAGCTAAAGTCAATTATGGGGACAAACTTTTGTGAGTAGCTTATGGGTGCCAGAATTG ATTGAGGAAAAAAAAACTATTCCAAACTTGCTATAAGTTAATTATGGGTCAATTGTGAAGAGCTTGTTAAAGTGTGTCTA AATAAAATAGTATGTTGCGAGCATTCATTTTGATTTAGTTTTACAGGTTGATGACTATTATCCCATTTGTTGCAGGTCTA CAGACATATAATGACGCAAAACATTTTTCCATATCTGCAAAGATTCCAGAGTTAAGCAATAAGAACAAGACCCTGGTGGT CCAGTATTCTATTAGATTTGAGCAGGACATCGAGTGTGGTGGTGGTTACATCAAACTTCTTTCTGGTTATGTTAATCAGA AAAAGTTTGGTGGTGATACGCCTTATAGGTCTGTCAGCTTCTTATGCTGTGCATTTTTTTTGTTTCTTTATTTGCAATTT AGAAGTTCTTTGACTTGGTAATTTATTTGTGGAAAACGGTCAATTTCATGACTATGCAGAGTTTAGTTCATAATTACTTA TGATCACAATGATAAGTTTGGTGTCGATTATATTTCTTATATGCCTCCATCCTTTTCACTGCTCAAATGATCACGTAATA TGTGAGAGATATACTAAATATATACTTATGCTCTGATGAAAGCCTTCTTCAAAGAGGAATCTCTGAGCTACCTTGGTGGA AGAAACGATGAGCTTTTATAGACTTGATGTGTATATCGCACTTAATAGTTACTTTTTTACATGCTAATGCTAAGCTTCTG GTCATTTGATGTCAAAGAAATCTACGCTTCACTTCTTAGTTCGTCTATTGAGAAGACTGCAGAGTCAACTAATTGGTCTT TCTTATTGCAGTTTCATGTTTGGACCAGACATATGTGGCACACAGACTAAGAAGCTCCATGTTATACTGTCCTACCAGGG CCAGAATTATCCTATCAGAAAAGATTTGCAATGTGAAACAGACAAATTAACTCATTTCTATACATTTATACTAAGGCCTG ATGCTACTTATAGTGTCCTTGTTGATAATCGAGAAAGAGATTCTGGAAGCATGTACACAGATTGGGACATCCTTCCTCCA AGGAAAATCAAAGATGTCAAAGCAAAAAAGGTAGCACTTCTGGATCATAGTTTGTGGGTTAGCATGTATCAATGTCTGTG ACTTTTGTCTTAAGTCAAAGATAGTTATGTATTGTTATAAGGCGATAAGCTGCAAATGCGATGTTTTTAGTTATTGCTGT CTGGCTCTCGAAGGTTGTATATTAAAAAAAACTGAAACAAACATTATGTGAGATTCTAAAATTGAGATGGGAGACGTTTT GGTTCTTTTTGTTTTCCTTCTTCATTGTGATTCTAAAACGAACATTCATTATATTCCCTATTGCAGCCAGCAGACTGGGA TGATAGAGAGTACATTGAAGACCCTAATGCTGTCAAACCAGAGGTACGTTCCGTCCTTCACCCAAATCTTCTCACGGTAA CTTGTAATTTTTCATCAAGACGTTTACCTTTTTTAGCGTTTGCATTCATGTGAAAAACCAAATCGATCACCTCTAGGAAT TTATACAGCAGTATGAATTTTCTTAATACGTTATCAAACTTCTGCAGGGGTAAACAGAAAGCATATTCTTATTTCTAATA AGGATAGATCATCAAGTTGATATATTTTCAAAATAACTTTTAATGGCTGACCTCAGTTTAAAGTTTTAGGTGGCAAATAA TGTCAACTTTCATTTGTGTGCTTCTTCTTGTCTCGATATTGCAGGGATATGATTCAATTCCAGCTGAAATTCCTGATCCA AAAGCCAAGAAGGTTTGTTTGCTTACTACATATTTAAGTAAAATTTAAAGATCGCTACACACTTTGACAGAAGACTTGAT TTGGCATGAACTTACAAATGCTCTTTTCCTTGTTTTCTTTGTGTTTATTTTTCGGTTTGACTAGCCTATTGACTGGGATG ATGAAGATGATGGACTTTGGAAGGCCCCCAAAATTCCTAATCCAGCATACAAAGGACCGTGGAAACGCAAGGTTCTTGAA GCTACACACTTAAAAGTTGAATTCATATTCATATATATATATATATATATATATATATATATATATATATATATATATAT ATATATACTTTTCTAATTGTTGAATTGAATCCCAGAAAGTCAAGAACCCCAACTACAAGGGAAAGTGGAAAACTCCATGG ATTGATAACCCAGGTAAACTTATTTTATTAGCAGGTGATATCAGGCCTTAGAATCATAAGCTTCAAAGCATTAATTGGGT GGTAAACACAAGTAAAATAACTTGCTCGTATTTCAGTCTTTGTCATTTTTGTTTGTCAACTTGTATCCTCTGCATACATG AAGTATCCTGACTTTATATTGATATGTGGAGCCAGAATGATGATTTTTGAACTTATAATGGGCTAGGGGAATTCGATTAG ACATTTAAAGAAATTAAAATTATATATGGTTTTCATTTCATTAGTTGGCTACCAGCGTGCAGGTAAACTATTTCAGTAGC TAACAGCCTCCATTGCATTTCACTTAATCATATCCTCTGCATGAATATTTGTGAAATCCATAATTAATTTGTGCAAACTT TGAATCACATCTATATCTTTTAGACATTTCGAAAATTTATGCGACACTTTGTCTCTTGCTCCCAAAACTAAGAATTCCAT CTCTGCTTATGAATTTTACTATCTGTTTCATGCAGAATTTGAAGACGACCCTGATCTTTATGTGCTGAGACCAATAAAGT ATGTGGGCATTGAAGTGTGGCAGGTGTGTGTGTGTGTGTGTTTGTCTGCATTTTTTTACCTTTTTTTTCTTCCTCTTTAG CGATTGAGAACTAATTGCCGTGAACATTAGCTGAACTTGAATATTTAGCTATTAATGAATATTTGAAGCTTGATAATATT ATAATTTGAATTTTCAGGTGAAGGCCGGTTCAATTTATGACAATATCTTAATTTGTGATGACCCACAGTATGCAAAGCAA ATTGTGGAAGAATATATGGTTAATTATAGAGAGGTGAGTGTTTGCTTTCAGACTTTTGCATCTGTCGAACCATAGTATTT GCATTCTCATTATGTGTAAAATCTCAGGCTGAAAAAGAAGCTTTCGAAGAAGCAGAAAAAGAAAGAAAGGCTCGGGAAGA AGAGGTAATTAATCAAAGCCTAAATGCTTCAGCACTATTATGATATATGCAATAATCATATTTGTTTCTAAATGGCTCCA TTTGATGCTATGACTTCACAGGAGGCCCAGAGAGCAAGAGAAGAGGGTGAAAAGAGGAGGAGAGAGAGGGATCATAAATA CGGAGATAGGAGGCGCCGTAGAAGGGTAACTTTTTCCCTCCTGATTGTACTCCAAAATTTGTTTTCTGGGTTGCATTTAT GTATGTAGACTTTGTAGTGAAGTTTTGGTTTATGTTTTTCTATATTGCATGTTAGGAATTAATACTAGGGCAGGTGGGGG ACTACTCAAATAATGGACTTCCTTCTCTCTTAACTTTTGCGTTTGTGATGAGAGAACATACAAGATAGGATAATTATTGA AGCGAGGTTATTTTCATCATGGTGCTTTTGAAACTCTTTCCTTTAAAACATCTAGTTAAGCACTTAGGATGATAAGTTTG TCTTGTAAGTACCAACTAGAGTACTGGACCAATCAGGAGAGAATTCAGGCATTCCCTGCCCCAGGCTTAAGTTGACAGTG TTGGAATAATAAATTATTTAGAGGACTTTGTAAGAAAAAGAATGTATCCAGGCTTCATGTTCAAAAATATAAGAGGGAAA ATCATTGGTCTCAGTTATTCGGGTTAGGCCTATCTCTACCCAAAAGTTGGCTCTGGGGTGAGTATTACATGAAGAGTGAA GTTTGCAGGATTGAGCATCTGCTGGTGGCTCTTTTATGGGTAACTCAATAAACAGGTCTAGGGTAGACTCTCATACAATC TTAATTATTTGGGCTAGGCCTAACTCTACCTTCAAAGCTAGCTCAAGGGCAAAGATTTCTCTACCCTATATAAATAATAA ATTAGCTACATCTGTAGTCAATGTGAGACCATCCTTAGTTATATTATTCAGTTTAGGACTAACTTTACTTCAAAGGCTCG CTCGGGAGTGAGAATTCCTCTACCCTTTTATATGAATTTATTTACCCGTATCTCTAGTCAATGTCCTTGACAACTGGGGA ACATAAATTTGGGGCACTGGAGGGGGGAGGGAGATAGACATAACAAAACCAATTGCTGTTTGAGGTTTGAGTTTTGAGTT TGTTTTCTCTTCAATCCATAATCCAACTCATGTAATTTTATTTTGCCCACAAGCTACATGAAATATGATTTTCTGACTTC GTTTTGCAGCCGGATCCCCACGATTACATGGATGATTACCATGTAAGCCTAAATCTCTCTACTATTTAATATATGTGTGT GTGTATCAATGTCTCATTATATTTTATTGCTTTCTGTTGTTCCTGTGATAACTTGTAGTCATTTAAAATCAAACCTTTTC CATATCCAACTAAATACAACCAAGAGATTTGTATAAAGAAAGACCTTGCGTAGTTACACCAAAAGTAGAGGTAACGCTAA ATAAAAGCATTATTCAATCCTCAATTTGTACCCCCCTATATATGACCACAATGTCATTGGTTAAATCTGTATTTTCTCAG CACCTAAAAAAATGAAAATATCCAAATGATTGAAAATAAACAATGTTCAGGGAGTATCATCATAATTAATGTTGTTCTAA GCTGTAAAATTGGAAACAAGTTCCTGAAAATTTCAGCTATTTCTCAGATATAAGCCTCCATGCATTTGAAAATTTGAGTC CGTTTCTTCCTGTCATAGCTTAGGATTATTGTAGGGGTATTGGATGTTAATTATGTTAGTTGTATTTGATGAACTTTCAG ACTGGGGAATTATGTAACTAAGCTCTCTTTTAAAAAAAAATTCAAAGTCGATAAAACCTATGCCTTGTTATATTAGCTGT GTGAGTTGATCACCTAACTCTACACATTTATTTCGAATTGGAGAACTAACAAATATATTTGTTTAGTTTATCTTACATCT GTGTGGAAACCATATGTACATATAAATCATTATTACTATTAGGCTATAAAATTTGCAATTTTATTGTTTGCCTGTATGCT GGCACCAGATGGCTTATCGGAAAAAAAGAAAGAAAGACTAGTGCAAACAGACACCAGCACACATTTCAATATTGAAATTT AACGGAACTATTTTTATAGATTGAGATGAAAGTTCGTTTTAGTTACTCAACTGATATTCAAACACACTAAAATCATGTTT GGAAATCTGTTAGCACCAATTCATATAGAGGTTAGTACTCGCTGAGGTAGAAAGTGAATAGAATTCATCTTATGGATTGA GATAAAAATTCATTCACTCTAAAATTCAATTAGTATCCAAACACAAATTATATTGTTGTTACATGTGGTTTGGCTATCCA TTTATGGCTTTAAAAGGTCTTTTAGGAGCAAAATGTATTGCAGATGACAAATCCTTTGGATATAAATTACATTTGACACT ATGCTTGAGGTGTTCAAAGCTTTTCACTATATTTAGTTATTTACACTTTTCTTTTCTCGTTTTGATTACTCTTATTATAT GCATTTCCTTGTTTTTTCTTCATTACAGGATGAACTCTGAAATGTGCACCGTGCGGGTAGTTGGGGTGCTGCATCATAAT TACAGCAATCTTCAATGCCACCTTCCAAGTTTGAAATATTTTCGAGTGTTGTGACCAAAAGCTGCATCTACACTGACCAT ACCAACTTGTACAACATGATTAGATATGTGTATGACTTATGTTTGAGCGTCATCCATTATCTTCTTTTCTTTTGGATTGT TCATTGCAGCTGTGACTGCACTCAAAGCATGGAACTAAAACTTTCTCTATATCTGTGCCCAAAAGAAAAGAAATTATCCA TATTTTTTTTTTCTTTTTGGTACTTTCTCATGATTGAAAATTCTTCTATAATTGATCCTGAAGTCAATCAGTTATGGGTA AAAGTTGGCCGTAAAAGTTTATGGAGTTTCATCTGAGTTTTCAGAGTTTCTTATGCTATAAATGGATTATGATTTTCTCA AATTACAGTGTTAGGCGAAACATAGTGTTTATTTGTGTCTCCAACAATATGTAGAGGGTCCTACTTATTTAAAACAAATG AAAAGAAGAGTTGGACACAATTTCAACATCAGGGAACCTAGTTTTCAAATGAGAGGATACTATTTGAGAATGGTTATGAG TCCTTGATTAAATAGATCTTAACGTTGCACTTAAGGTTTACTATATGGTAGGTAAGCATGTGATTTCTTTCTTAAAATAG ACTATAGGCTTTTCCCCCCCTTCAGCTGGAGTGGTAATGATTAGTTTTATTGAGAGTTTGGTAACAAAGAGGGTTAGTAA GATGCAGTATCCTCTCGTCTTAGGTAGCAAATTTGAAAAACTGTAGAAAAGGATTTGATAAAGCTACAACACACCCATGT TGTTATGTGTGTGTGTGGGGTTTATAACACTTTAGTTGGGAGGTACTTTCTAAATTTATGATATAAATTAATTACTTTTT TAAGGTCTCTATCTTTTGAAGATCCAATCCATAAAGTTTTTAAATTACTGTTTTAAAAGATAGTTTTAACTTGTAAAAAC AAC
CDS sequence (LotjaGi3g1v0500600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTAACACCAATCTTGTTCAACTCCTGCTTCTACTTCTTCTAACTCTTCACTCTTCCTTCGCCGAGGTTTTTTTTGA AGAGAGATTCGAAGATGGATGGAAGAGCCGTTGGGTTTTGTCAGATTGGAAAAGAAGTGAAGGAAAGGCGGGTACTTTTA AGTACACGGCAGGAAAATGGCCTGGAGATCCTGATGATAAAGGTCTACAGACATATAATGACGCAAAACATTTTTCCATA TCTGCAAAGATTCCAGAGTTAAGCAATAAGAACAAGACCCTGGTGGTCCAGTATTCTATTAGATTTGAGCAGGACATCGA GTGTGGTGGTGGTTACATCAAACTTCTTTCTGGTTATGTTAATCAGAAAAAGTTTGGTGGTGATACGCCTTATAGTTTCA TGTTTGGACCAGACATATGTGGCACACAGACTAAGAAGCTCCATGTTATACTGTCCTACCAGGGCCAGAATTATCCTATC AGAAAAGATTTGCAATGTGAAACAGACAAATTAACTCATTTCTATACATTTATACTAAGGCCTGATGCTACTTATAGTGT CCTTGTTGATAATCGAGAAAGAGATTCTGGAAGCATGTACACAGATTGGGACATCCTTCCTCCAAGGAAAATCAAAGATG TCAAAGCAAAAAAGCCAGCAGACTGGGATGATAGAGAGTACATTGAAGACCCTAATGCTGTCAAACCAGAGGGATATGAT TCAATTCCAGCTGAAATTCCTGATCCAAAAGCCAAGAAGCCTATTGACTGGGATGATGAAGATGATGGACTTTGGAAGGC CCCCAAAATTCCTAATCCAGCATACAAAGGACCGTGGAAACGCAAGAAAGTCAAGAACCCCAACTACAAGGGAAAGTGGA AAACTCCATGGATTGATAACCCAGAATTTGAAGACGACCCTGATCTTTATGTGCTGAGACCAATAAAGTATGTGGGCATT GAAGTGTGGCAGGTGAAGGCCGGTTCAATTTATGACAATATCTTAATTTGTGATGACCCACAGTATGCAAAGCAAATTGT GGAAGAATATATGGTTAATTATAGAGAGGCTGAAAAAGAAGCTTTCGAAGAAGCAGAAAAAGAAAGAAAGGCTCGGGAAG AAGAGGAGGCCCAGAGAGCAAGAGAAGAGGGTGAAAAGAGGAGGAGAGAGAGGGATCATAAATACGGAGATAGGAGGCGC CGTAGAAGGCCGGATCCCCACGATTACATGGATGATTACCATGATGAACTCTGA
Protein sequence (LotjaGi3g1v0500600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGNTNLVQLLLLLLLTLHSSFAEVFFEERFEDGWKSRWVLSDWKRSEGKAGTFKYTAGKWPGDPDDKGLQTYNDAKHFSI SAKIPELSNKNKTLVVQYSIRFEQDIECGGGYIKLLSGYVNQKKFGGDTPYSFMFGPDICGTQTKKLHVILSYQGQNYPI RKDLQCETDKLTHFYTFILRPDATYSVLVDNRERDSGSMYTDWDILPPRKIKDVKAKKPADWDDREYIEDPNAVKPEGYD SIPAEIPDPKAKKPIDWDDEDDGLWKAPKIPNPAYKGPWKRKKVKNPNYKGKWKTPWIDNPEFEDDPDLYVLRPIKYVGI EVWQVKAGSIYDNILICDDPQYAKQIVEEYMVNYREAEKEAFEEAEKERKAREEEEAQRAREEGEKRRRERDHKYGDRRR RRRPDPHDYMDDYHDEL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 22 | 22 | - | – | |
| Phobius | 1 | 22 | 22 | - | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| PIRSF | 3 | 412 | 410 | 1.8E-177 | ||
| Phobius | 6 | 17 | 12 | - | – | |
| PANTHER | 6 | 417 | 412 | 7.0E-266 | ||
| PANTHER | 6 | 417 | 412 | 7.0E-266 | – | |
| Gene3D | 15 | 230 | 216 | 1.8E-69 | – | |
| Phobius | 18 | 22 | 5 | - | – | |
| SUPERFAMILY | 19 | 221 | 203 | 3.01E-65 | ||
| Phobius | 23 | 417 | 395 | - | – | |
| Pfam | 26 | 261 | 236 | 6.4E-58 | ||
| ProSitePatterns | 101 | 116 | 16 | - | ||
| PRINTS | 103 | 121 | 19 | 1.3E-49 | ||
| PRINTS | 129 | 145 | 17 | 1.3E-49 | ||
| SUPERFAMILY | 204 | 319 | 116 | 6.41E-39 | ||
| PRINTS | 218 | 231 | 14 | 1.3E-49 | ||
| MobiDBLite | 231 | 253 | 23 | - | – | |
| Gene3D | 231 | 286 | 56 | 2.4E-19 | ||
| PRINTS | 246 | 268 | 23 | 1.3E-49 | ||
| Pfam | 263 | 336 | 74 | 1.0E-18 | ||
| PRINTS | 284 | 303 | 20 | 1.3E-49 | ||
| Gene3D | 287 | 380 | 94 | 5.5E-21 | – | |
| PRINTS | 317 | 337 | 21 | 1.3E-49 | ||
| Coils | 354 | 392 | 39 | - | – | |
| MobiDBLite | 362 | 417 | 56 | - | – | |
| MobiDBLite | 362 | 392 | 31 | - | – | |
| MobiDBLite | 399 | 417 | 19 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Calcium ion binding | Interacting selectively and non-covalently with calcium ions (Ca2+). | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Cellular component | Endoplasmic reticulum | The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached). | ||
| Biological process | Protein folding | The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure. | ||
| Molecular function | Unfolded protein binding | Interacting selectively and non-covalently with an unfolded protein. |
Expression pattern of LotjaGi3g1v0500600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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