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IPR001580

Description

IPR001580 is a Calreticulin/calnexin.

<p>The calreticulin family is a family of calcium-binding ER chaperonesthat includes calreticulin, calnexin and camlegin [[cite:PUB00063812]].</p> <p>Calreticulin (calregulin) [[cite:PUB00000513]] is a high-capacity calcium-binding protein which is present in most tissues and located at the periphery of the endoplasmic (ER) and the sarcoplamic reticulum (SR) membranes. It probably plays a role in the storage of calcium in the lumen of the ER and SR and it may well have other important functions.</p> <p>Structurally, calreticulin is a protein of about 400 amino acid residues consisting of three domains: <ul> <li>An N-terminal, probably globular, domain of about 180 amino acid residues (N-domain).</li> <li>A central domain of about 70 residues (P-domain) which contains three repeats of an acidic 17 amino acid motif. This region binds calcium with a low-capacity, but a high-affinity.</li> <li>A C-terminal domain rich in acidic residues and in lysine (C-domain). This region binds calcium with a high-capacity but a low-affinity.</li> </ul> <p>Calreticulin is evolutionarily related to several other calcium-binding proteins, including Onchocerca volvulus antigen RAL-1, calnexin [[cite:PUB00005415]] and calmegin [[cite:PUB00002891]].</p>

This description is obtained from EB-eye REST.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Calcium ion binding Interacting selectively and non-covalently with calcium ions (Ca2+).
Cellular component Endoplasmic reticulum The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached).
Biological process Protein folding The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
Molecular function Unfolded protein binding Interacting selectively and non-covalently with an unfolded protein.

Associated Lotus transcripts 11

Transcript Name Description Predicted domains Domain count
PREDICTED: calnexin homolog [Glycine max] gi|356508884|ref|XP_003523183.1| 27
Calreticulin-3 [Medicago truncatula] gi|357507831|ref|XP_003624204.1| 25
Calreticulin-3 [Arabidopsis thaliana] gi|18390896|ref|NP_563816.1| 13
PREDICTED: calnexin homolog isoform X2 [Cicer arietinum] gi|502139546|ref|XP_004503810.1| 26
Calreticulin [Medicago truncatula] gi|357441869|ref|XP_003591212.1| 26
Calreticulin/calnexin; TAIR: AT5G61790.1 calnexin 1; Swiss-Prot: sp|Q39817|CALX_SOYBN Calnexin homolog; TrEMBL-Plants: tr|A0A0R0KAL0|A0A0R0KAL0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0331500 27
Calreticulin; TAIR: AT1G08450.1 calreticulin 3; Swiss-Prot: sp|O04153|CALR3_ARATH Calreticulin-3; TrEMBL-Plants: tr|V7B1D3|V7B1D3_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0487200 25
Calreticulin; TAIR: AT1G08450.1 calreticulin 3; Swiss-Prot: sp|O04153|CALR3_ARATH Calreticulin-3; TrEMBL-Plants: tr|I3SD85|I3SD85_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0500600 23
Calreticulin; TAIR: AT1G08450.1 calreticulin 3; Swiss-Prot: sp|O04153|CALR3_ARATH Calreticulin-3; TrEMBL-Plants: tr|I3SD85|I3SD85_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0500600 23
Calreticulin/calnexin; TAIR: AT5G61790.1 calnexin 1; Swiss-Prot: sp|Q39817|CALX_SOYBN Calnexin homolog; TrEMBL-Plants: tr|A0A151S2C8|A0A151S2C8_CAJCA Calnexin isogeny; Found in the gene: LotjaGi4g1v0416900 26
Calreticulin/calnexin; TAIR: AT5G61790.1 calnexin 1; Swiss-Prot: sp|Q39817|CALX_SOYBN Calnexin homolog; TrEMBL-Plants: tr|A0A151S2C8|A0A151S2C8_CAJCA Calnexin isogeny; Found in the gene: LotjaGi4g1v0416900 26

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
mobidb-lite MobiDBLite 1 9.09