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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0500600 |
| Transcript ID | LotjaGi3g1v0500600.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Calreticulin; TAIR: AT1G08450.1 calreticulin 3; Swiss-Prot: sp|O04153|CALR3_ARATH Calreticulin-3; TrEMBL-Plants: tr|I3SD85|I3SD85_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0500600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:91882283..91886562) extracted from Lotus japonicus Gifu genome v1.2.
AATGAGATGGGTAACACCAATCTTGTTCAACTCCTGCTTCTACTTCTTCTAACTCTTCACTCTTCCTTCGCCGAGGTTTT TTTTGAAGAGAGATTCGAAGGTAATCAATCCTGTTCCTCCATTCACCTTAGATTCCTCAATAGGTTCCTCGTAGATTTCT TAAGATTCCAACCTTGAATTTCTTAGATTCTTTTTGTATTTGGTGCATGTAGCTTCCAACAGGATAATCAGCAATGTTTT CTATTAATTTTTTTTTCTGTAATGTTGTGTTTGCTTCAGTTTCAGTTAGTTTGATTGATTTTATAGCAAAAATGATTACT TTTCTAACTAGTTGACATGGGTTCATGTGGAATAAACATAGATGGATGGAAGAGCCGTTGGGTTTTGTCAGATTGGAAAA GAAGTGAAGGAAAGGCGGGTACTTTTAAGTACACGGCAGGAAAATGGCCTGGAGATCCTGATGATAAAGGTATTCAGTTC ACATCTGTAATCTGTAGATTATTTCATTTGGCATTGAATTGATTAATGTAATAAGTGATTTTACTCAAAGAATGCTAAAA ATGCTCTATTTTTAAAAGTTTATGATCAGTTTCACTTTTCATTGTGTATTAGAGATATGTGAAGTCGCGTATGCCTTGAT TGAAGCAGGAAAACATTCACACTCTAAGTGCATGTTTGAAAGTCCTTCTATAATTGATTTTAAAGCTAAAGTCAATTATG GGGACAAACTTTTGTGAGTAGCTTATGGGTGCCAGAATTGATTGAGGAAAAAAAAACTATTCCAAACTTGCTATAAGTTA ATTATGGGTCAATTGTGAAGAGCTTGTTAAAGTGTGTCTAAATAAAATAGTATGTTGCGAGCATTCATTTTGATTTAGTT TTACAGGTTGATGACTATTATCCCATTTGTTGCAGGTCTACAGACATATAATGACGCAAAACATTTTTCCATATCTGCAA AGATTCCAGAGTTAAGCAATAAGAACAAGACCCTGGTGGTCCAGTATTCTATTAGATTTGAGCAGGACATCGAGTGTGGT GGTGGTTACATCAAACTTCTTTCTGGTTATGTTAATCAGAAAAAGTTTGGTGGTGATACGCCTTATAGGTCTGTCAGCTT CTTATGCTGTGCATTTTTTTTGTTTCTTTATTTGCAATTTAGAAGTTCTTTGACTTGGTAATTTATTTGTGGAAAACGGT CAATTTCATGACTATGCAGAGTTTAGTTCATAATTACTTATGATCACAATGATAAGTTTGGTGTCGATTATATTTCTTAT ATGCCTCCATCCTTTTCACTGCTCAAATGATCACGTAATATGTGAGAGATATACTAAATATATACTTATGCTCTGATGAA AGCCTTCTTCAAAGAGGAATCTCTGAGCTACCTTGGTGGAAGAAACGATGAGCTTTTATAGACTTGATGTGTATATCGCA CTTAATAGTTACTTTTTTACATGCTAATGCTAAGCTTCTGGTCATTTGATGTCAAAGAAATCTACGCTTCACTTCTTAGT TCGTCTATTGAGAAGACTGCAGAGTCAACTAATTGGTCTTTCTTATTGCAGTTTCATGTTTGGACCAGACATATGTGGCA CACAGACTAAGAAGCTCCATGTTATACTGTCCTACCAGGGCCAGAATTATCCTATCAGAAAAGATTTGCAATGTGAAACA GACAAATTAACTCATTTCTATACATTTATACTAAGGCCTGATGCTACTTATAGTGTCCTTGTTGATAATCGAGAAAGAGA TTCTGGAAGCATGTACACAGATTGGGACATCCTTCCTCCAAGGAAAATCAAAGATGTCAAAGCAAAAAAGGTAGCACTTC TGGATCATAGTTTGTGGGTTAGCATGTATCAATGTCTGTGACTTTTGTCTTAAGTCAAAGATAGTTATGTATTGTTATAA GGCGATAAGCTGCAAATGCGATGTTTTTAGTTATTGCTGTCTGGCTCTCGAAGGTTGTATATTAAAAAAAACTGAAACAA ACATTATGTGAGATTCTAAAATTGAGATGGGAGACGTTTTGGTTCTTTTTGTTTTCCTTCTTCATTGTGATTCTAAAACG AACATTCATTATATTCCCTATTGCAGCCAGCAGACTGGGATGATAGAGAGTACATTGAAGACCCTAATGCTGTCAAACCA GAGGTACGTTCCGTCCTTCACCCAAATCTTCTCACGGTAACTTGTAATTTTTCATCAAGACGTTTACCTTTTTTAGCGTT TGCATTCATGTGAAAAACCAAATCGATCACCTCTAGGAATTTATACAGCAGTATGAATTTTCTTAATACGTTATCAAACT TCTGCAGGGGTAAACAGAAAGCATATTCTTATTTCTAATAAGGATAGATCATCAAGTTGATATATTTTCAAAATAACTTT TAATGGCTGACCTCAGTTTAAAGTTTTAGGTGGCAAATAATGTCAACTTTCATTTGTGTGCTTCTTCTTGTCTCGATATT GCAGGGATATGATTCAATTCCAGCTGAAATTCCTGATCCAAAAGCCAAGAAGGTTTGTTTGCTTACTACATATTTAAGTA AAATTTAAAGATCGCTACACACTTTGACAGAAGACTTGATTTGGCATGAACTTACAAATGCTCTTTTCCTTGTTTTCTTT GTGTTTATTTTTCGGTTTGACTAGCCTATTGACTGGGATGATGAAGATGATGGACTTTGGAAGGCCCCCAAAATTCCTAA TCCAGCATACAAAGGACCGTGGAAACGCAAGGTTCTTGAAGCTACACACTTAAAAGTTGAATTCATATTCATATATATAT ATATATATATATATATATATATATATATATATATATATATATATATACTTTTCTAATTGTTGAATTGAATCCCAGAAAGT CAAGAACCCCAACTACAAGGGAAAGTGGAAAACTCCATGGATTGATAACCCAGGTAAACTTATTTTATTAGCAGGTGATA TCAGGCCTTAGAATCATAAGCTTCAAAGCATTAATTGGGTGGTAAACACAAGTAAAATAACTTGCTCGTATTTCAGTCTT TGTCATTTTTGTTTGTCAACTTGTATCCTCTGCATACATGAAGTATCCTGACTTTATATTGATATGTGGAGCCAGAATGA TGATTTTTGAACTTATAATGGGCTAGGGGAATTCGATTAGACATTTAAAGAAATTAAAATTATATATGGTTTTCATTTCA TTAGTTGGCTACCAGCGTGCAGGTAAACTATTTCAGTAGCTAACAGCCTCCATTGCATTTCACTTAATCATATCCTCTGC ATGAATATTTGTGAAATCCATAATTAATTTGTGCAAACTTTGAATCACATCTATATCTTTTAGACATTTCGAAAATTTAT GCGACACTTTGTCTCTTGCTCCCAAAACTAAGAATTCCATCTCTGCTTATGAATTTTACTATCTGTTTCATGCAGAATTT GAAGACGACCCTGATCTTTATGTGCTGAGACCAATAAAGTATGTGGGCATTGAAGTGTGGCAGGTGTGTGTGTGTGTGTG TTTGTCTGCATTTTTTTACCTTTTTTTTCTTCCTCTTTAGCGATTGAGAACTAATTGCCGTGAACATTAGCTGAACTTGA ATATTTAGCTATTAATGAATATTTGAAGCTTGATAATATTATAATTTGAATTTTCAGGTGAAGGCCGGTTCAATTTATGA CAATATCTTAATTTGTGATGACCCACAGTATGCAAAGCAAATTGTGGAAGAATATATGGTTAATTATAGAGAGGTGAGTG TTTGCTTTCAGACTTTTGCATCTGTCGAACCATAGTATTTGCATTCTCATTATGTGTAAAATCTCAGGCTGAAAAAGAAG CTTTCGAAGAAGCAGAAAAAGAAAGAAAGGCTCGGGAAGAAGAGGTAATTAATCAAAGCCTAAATGCTTCAGCACTATTA TGATATATGCAATAATCATATTTGTTTCTAAATGGCTCCATTTGATGCTATGACTTCACAGGAGGCCCAGAGAGCAAGAG AAGAGGGTGAAAAGAGGAGGAGAGAGAGGGATCATAAATACGGAGATAGGAGGCGCCGTAGAAGGGTAACTTTTTCCCTC CTGATTGTACTCCAAAATTTGTTTTCTGGGTTGCATTTATGTATGTAGACTTTGTAGTGAAGTTTTGGTTTATGTTTTTC TATATTGCATGTTAGGAATTAATACTAGGGCAGGTGGGGGACTACTCAAATAATGGACTTCCTTCTCTCTTAACTTTTGC GTTTGTGATGAGAGAACATACAAGATAGGATAATTATTGA
CDS sequence (LotjaGi3g1v0500600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTAACACCAATCTTGTTCAACTCCTGCTTCTACTTCTTCTAACTCTTCACTCTTCCTTCGCCGAGGTTTTTTTTGA AGAGAGATTCGAAGATGGATGGAAGAGCCGTTGGGTTTTGTCAGATTGGAAAAGAAGTGAAGGAAAGGCGGGTACTTTTA AGTACACGGCAGGAAAATGGCCTGGAGATCCTGATGATAAAGGTCTACAGACATATAATGACGCAAAACATTTTTCCATA TCTGCAAAGATTCCAGAGTTAAGCAATAAGAACAAGACCCTGGTGGTCCAGTATTCTATTAGATTTGAGCAGGACATCGA GTGTGGTGGTGGTTACATCAAACTTCTTTCTGGTTATGTTAATCAGAAAAAGTTTGGTGGTGATACGCCTTATAGTTTCA TGTTTGGACCAGACATATGTGGCACACAGACTAAGAAGCTCCATGTTATACTGTCCTACCAGGGCCAGAATTATCCTATC AGAAAAGATTTGCAATGTGAAACAGACAAATTAACTCATTTCTATACATTTATACTAAGGCCTGATGCTACTTATAGTGT CCTTGTTGATAATCGAGAAAGAGATTCTGGAAGCATGTACACAGATTGGGACATCCTTCCTCCAAGGAAAATCAAAGATG TCAAAGCAAAAAAGCCAGCAGACTGGGATGATAGAGAGTACATTGAAGACCCTAATGCTGTCAAACCAGAGGGATATGAT TCAATTCCAGCTGAAATTCCTGATCCAAAAGCCAAGAAGCCTATTGACTGGGATGATGAAGATGATGGACTTTGGAAGGC CCCCAAAATTCCTAATCCAGCATACAAAGGACCGTGGAAACGCAAGAAAGTCAAGAACCCCAACTACAAGGGAAAGTGGA AAACTCCATGGATTGATAACCCAGAATTTGAAGACGACCCTGATCTTTATGTGCTGAGACCAATAAAGTATGTGGGCATT GAAGTGTGGCAGGTGAAGGCCGGTTCAATTTATGACAATATCTTAATTTGTGATGACCCACAGTATGCAAAGCAAATTGT GGAAGAATATATGGTTAATTATAGAGAGGCTGAAAAAGAAGCTTTCGAAGAAGCAGAAAAAGAAAGAAAGGCTCGGGAAG AAGAGGAGGCCCAGAGAGCAAGAGAAGAGGGTGAAAAGAGGAGGAGAGAGAGGGATCATAAATACGGAGATAGGAGGCGC CGTAGAAGGGAATTAATACTAGGAACATACAAGATAGGATAA
Protein sequence (LotjaGi3g1v0500600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGNTNLVQLLLLLLLTLHSSFAEVFFEERFEDGWKSRWVLSDWKRSEGKAGTFKYTAGKWPGDPDDKGLQTYNDAKHFSI SAKIPELSNKNKTLVVQYSIRFEQDIECGGGYIKLLSGYVNQKKFGGDTPYSFMFGPDICGTQTKKLHVILSYQGQNYPI RKDLQCETDKLTHFYTFILRPDATYSVLVDNRERDSGSMYTDWDILPPRKIKDVKAKKPADWDDREYIEDPNAVKPEGYD SIPAEIPDPKAKKPIDWDDEDDGLWKAPKIPNPAYKGPWKRKKVKNPNYKGKWKTPWIDNPEFEDDPDLYVLRPIKYVGI EVWQVKAGSIYDNILICDDPQYAKQIVEEYMVNYREAEKEAFEEAEKERKAREEEEAQRAREEGEKRRRERDHKYGDRRR RRRELILGTYKIG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 5 | 5 | - | – | |
| SignalP_EUK | 1 | 22 | 22 | - | – | |
| Phobius | 1 | 22 | 22 | - | – | |
| PIRSF | 3 | 405 | 403 | 9.3E-178 | ||
| PANTHER | 6 | 406 | 401 | 3.9E-263 | – | |
| PANTHER | 6 | 406 | 401 | 3.9E-263 | ||
| Phobius | 6 | 17 | 12 | - | – | |
| Gene3D | 15 | 230 | 216 | 1.8E-69 | – | |
| Phobius | 18 | 22 | 5 | - | – | |
| SUPERFAMILY | 19 | 221 | 203 | 3.01E-65 | ||
| Phobius | 23 | 413 | 391 | - | – | |
| Pfam | 26 | 261 | 236 | 6.2E-58 | ||
| ProSitePatterns | 101 | 116 | 16 | - | ||
| PRINTS | 103 | 121 | 19 | 1.2E-49 | ||
| PRINTS | 129 | 145 | 17 | 1.2E-49 | ||
| SUPERFAMILY | 204 | 319 | 116 | 6.28E-39 | ||
| PRINTS | 218 | 231 | 14 | 1.2E-49 | ||
| Gene3D | 231 | 286 | 56 | 2.4E-19 | ||
| MobiDBLite | 231 | 253 | 23 | - | – | |
| PRINTS | 246 | 268 | 23 | 1.2E-49 | ||
| Pfam | 263 | 336 | 74 | 1.0E-18 | ||
| PRINTS | 284 | 303 | 20 | 1.2E-49 | ||
| Gene3D | 287 | 380 | 94 | 5.4E-21 | – | |
| PRINTS | 317 | 337 | 21 | 1.2E-49 | ||
| Coils | 354 | 392 | 39 | - | – | |
| MobiDBLite | 364 | 398 | 35 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Calcium ion binding | Interacting selectively and non-covalently with calcium ions (Ca2+). | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Cellular component | Endoplasmic reticulum | The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached). | ||
| Biological process | Protein folding | The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure. | ||
| Molecular function | Unfolded protein binding | Interacting selectively and non-covalently with an unfolded protein. |
Expression pattern of LotjaGi3g1v0500600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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