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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0508200 |
| Transcript ID | LotjaGi3g1v0508200.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Phenylalanine--tRNA ligase alpha subunit; TAIR: AT4G39280.1 phenylalanyl-tRNA synthetase, putative / phenylalanine-tRNA ligase; Swiss-Prot: sp|Q9T034|SYFA_ARATH Phenylalanine--tRNA ligase alpha subunit, cytoplasmic; TrEMBL-Plants: tr|A0A151TGA0|A0A151TGA0_CAJCA Putative phenylalanyl-tRNA synthetase alpha chain; Found in the gene: LotjaGi3g1v0508200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:92504517..92510389) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCGGAAGAAGCCGTTCTGGGTTACCTACAAAACAACGACGAGATTAGAGATTCCGGCGAGTTTGCAGCTGAACGCGG CATCGACCACAATGAGATAGTGAACATCATCAAGAGCCTCCATGGTTTCCGATACGTCGATGCTGAAGTGGGTAAACCGT ATCTCATCTTCTTCTTCAGGTAACCTCAATTGCAAATTGAAAACTCGGTGTTGTTGAAATGTGTGGTTTTATTTTTTTAT GGACAGGAAATTAAGCGTGAGTCATGGATGCTCACTGATGAGGGGAAGACGTATGCTACTGTGGGATCCCCTGAAATGCA GCTCATGTTGGCAATTCCACCCGAGGGTATCTCAAAAGATGAACTTCAGGTCATATTGCAACACCCATTTTCTTTGTTTC ATTCATTTTGTACTTAATTTGGGATGAATGTAATTTTGTTGAGGTTCTCTTCTTTTTTTTACCTGATTGTAGAAAAAGCT GGATCCCTCGACTTTCAAGATAGCTTGTGCTCAGGCTGCAAAGAACAAATGGGTTGAGATGGGAAAACAACTCATAACTA GGAAGGTATGTAATGAATCTAATGATTCAGTGTTGCCATTATATAAGATGAGATGAGATACTATGCTGTTTTGGTCATTG ATTATAGAATATTATGTTAAGATAATTGAGTGTTAGAAGATTTTGATTTGGGTGTTTGATTGAGCTGAGCTCAATTGGCT TAAGTAGTAATGAGTCATTACTCATTAGTGATACTCGTTGTTGTTGGAAATTTAAGTGTAGGTGATGAAGTCAGACATAG GTTAAAAATGAGTATTAAGTGTAATGTTCGGATTGACTCTGAGATAACACCTGAGGGGGAGAATATTGGAAATTCTAGTT GGAGTAATGAAATCCCACATAGGTATAGAATAAATTCTCCGTTCTTCTCGGGTTACCCCTCATACTCTAACAAAGTAACA ATTAGTCAATTACTCATTAAGAAATTTGGTTTCCCAAATTTACTTGCATTCTCATTATGTGCATGCACATGCCCTTGGAA GCAAACTGCATATCCATGCTTGTCTTTTTTCTTTATTTTTTCACTAACTGTGGGTTTTCACTTTTCAGTATTTTGTTTAA TGCATATTTGCATGTAATTGAAACAGTTATCTTGATGTTCAGCGTACTCTCCCATTTGAGATGAGAATGGCTTTATGATT TATGAATATTTCTTATAAGTCAGATCCTTGCTGCAGGTCGAGCACGTGGATGACAGGGTTAAAGACCTCCTTCTTCAAGT TCAGCAGGGACAGGTGTGTACTAGTATGAATATTTTGATCAGTAAATTTCTTATGTGTGTTGTGTTAAGAGAAGGCATAT GGAGGAGGAATGCAGGTCCTTCTTTTTTGGGTTGGGGGGCCTGTCACTATTAAATGTTTTGTTTTTGCTAGGATGAGTTT TGTTGAAAATTGAGATGACATGCTGTGATATTCAACTATGATAATTCCAAAATCAGATAATAAAGAATGCATCGTGAAGT GTCATGTATTATTATAGTCAATCGCCAAAACCTTTTTTATATTCGACTAATAAATTCTTCTCATGCCTTTTTGGGATCTC CTATTAACGTATTCTTTCAGCATAAATTCAATAGGAAACTATGAGCTCATTTCTTCCAGTCTTATACTTCACACACACAT CCATCTGGTAACATGCACTTGCTGATTGGGGCTGATGACAGGGTAGTTACATTAGATGATATCAACTTCTTCTTAGGCTA CAGATTGGGTTTGCAATGATACCTTGGGGAAAATCGCAAGGTTTTGTATGGAGCACAGATTCAACATAACACATGAGACA GTTATAGGAAGTGGAAAGGGGCCAAGGGGGGATTTTGAGATGTTTCATTTCCATTTAGTTATGAGGTGTACCTGCACTTT TGTCCATAAGTGGGTGGGTGATGGCTAAACAGTTCTATGAACAACTATTTGTTTGGAGGGACTGTTGTTCTTGACCTTTT TGTTTCCTCCTTATGTTATTCTTTTATGGGTCACTTATCGTTTTCTAAATCAGTTTTCCTTGTGAAATTCCCAGATCTTG TTAGAAACTTTACCATATGTTGTAAATGCAGGGCATTGGCTCAGATGATATCAAAGCACTCAAAGCAAGAAAGCTTATTG TTCCACAGTAAGAACAATTTCACCTGATTGTGCAGAAGAGTTTTGTAGAGATGCTGAATATGCTGTAAATGACTTGACTG TTTTTCATTACTAAAATTCTTCTTGATATCTTGTGATCTAGGACATGGAAAGGTTACTCGGTTAAAAAAGGTCCTAATTA TGCTCCAAAAAGAAAGAAGGTTGTCACAGATTTGACGCGAGATAATTTTCAGAGGTATTTTTTTTTGCTTAAACTGAAAA GTAAACTGGAAAATAGGGGGGGGGGGGGGGGTTAAACCTTTTGTATTTTTTGTGGATCTGTTGCATCATATCCAAAGAAC TCTAACTGTAATGCATTACTTTATGGCAGTGGTGAGTGGAAGGCGTTAGAGTTCAAAGAGTACAATTACAGCGCTAAAGG TCAGCCTCTAGAGGGTGGCCATCTTCATCCATTGCTGAAGGCAAGCAAATATATAACCTGCCCCTTCTTCCTCCTCTCCC CAAATCAAATGAATATCAAAGTAGTACACCATAGAAACTCCGTGACAATTAAGAAAAAGAAAATCCATATTCAGGAAATA TAAGAGAAAGTATATTGTGTTTTTGTCGCTGTTGATTATTTTTCTTAAAAAAAAAAAAGAAGTTCGACCATTGCTGATAC TATGTATTTAATAATTTTGGATATCTCTTTATTTTCAGGTACGGGCTCAACTGAAACAAATTTTCCTCTGCATGGGGTGA GTGCGATCTTTGTTTTGCTGGAACCTGATATCTTTTTTGGTAAATGTTTGTTTCAAACTTAACATTTTGTGATGATATTC TGCTGCTGCAGGTTTGAGGAGATGCCGACAAATAATTTTGTTGAGAGCAGGTAATTGTTGTTTCCAAATCAATACCTTTC TATTGTCTCTGATTGAGATGCAGATGCTCTACCTTAAGGTTCTGATCCCTTTCCTACCATATCAAATGACTAGTGGAATC TGTTGTATACTTTAGTAAGTAAAGAAATACTCACGGAATGTATAAATAAGTATAAATAACGATAAACTTAATGATGTTAT AGAATCGACTAATAACAGTTGAAATATGAAAAGAAAAGAAAAAAGACTGTCAAAATCTCAATGATTAAGCTTTCTAACCC CCCCCCCCCCCCCTCCCCAAAAAAAGAGGCTCTGGGCTCTCTAATGCTGCTTTCAAGCAAGCAGGTGAAAATGTGTGACT CGAATATGTGAGAAGGAGCAATGCACAAGATCAGACCTAGGGGAGAGAGCATAAGAAAGAGATCCCACCTAGTAACTAAC TGCCTAGCTAGTAGTAGAGACAAGAGCACGAGGGGGTTGATTGTAGCGGAGGGTAAACATTTAGGGAGGAGGAATGGAGA GAGGAGTCTGGAATTTGGCTTGGAGTTGGGAGAGATTAGGCTCTCTCGAACTGTCTAGGGACTTTACATTTCCTTTTTTT CTTTCTGCATTTGTACACAAACTATACCTGCCACCTGAATTCCTTTGAGTCAGGCTTGCTACTTGAAATAAATTACAGAT ATTCTTCTCTGTTTCATTTACTTGTGTATTTGGATAGTAGCAGGACATGACCACTTCGCTTTAAACATCACATCTAAATC TTTTATTTGGCAGCTTCTGGAACTTTGATGCCTTGTTCCAGCCCCAGCAACACCCAGCCCGCGATTCGCATGACACATTT TTTTTGGAAGGTTAGTAAAACCTTGATATCTTCTATGCTATTCTAATCTTCTGTGTTTCCATTTTGACTACATGTGACAC ATACATCTACAGCTCCTTCAACAACACAGGAACTTCCTGAGGATTATGTTCAGCGCGTAAAGCAAGTTCATGAATCTGGT GGTTATGGGTCTAAGGGGTATGAGCTTTAACACCCTCAATGCAAGTAGCATAGGCTATTTATTGATCAGGAATGCTACCA ATATTCAATATTTAGTGTTGGTAGTATTTCTTTTTGCTGATAGACAAATAAATTGCAAACTGTTTTCTGAGGGAAACCTG ACAATTTATTACTTGGTAGTTATGCATATAAATGGAAAAGAGAGGAAGCAAATAAAAACCTCCTGCGGACCCACACAACT GCTGTTTCTTCCAGGATGCTTTACCAGCTGGCACAGGTTTGCATCTATATCTGAATTTGTACGTATAATGTTCTTGTGGG TGCATTTGATTGTGTGATGTTTGGTGCCATTGGGCTTCCTACTATTCAAATTTTCCTGTATGAATCGCATTGAATGATTG AAGTTTCTGACTGATGTATTTTTATGTGTTTTAGCTGGATTGAGCTATTTTATTGTGTTTCTATATTTTACTTTTTACTC ACCCCTCCTTCCACACTATTCAGTGATTATACTTTCCAAGTTCTTGCTATGAGTTATCGTTTATATCATTCTATTTCCCC ATTTTAATGATTCTGCAGAAACCATTTTCTCCAAAAAAATATTTCTCTATAGATCGTGTATTCAGAAATGAAGCAGTTGA TCGAACACATCTTGCTGAGTTTCACCAGATAGAAGGTATGTGAGAGCTAGTAACTTACCAGGGTTGGGATTTTAGTTCTT TTCAAATTGTTTTACAAATGAAAACATTTCACATTTGATGGTCCTCTTACACTTTTCATTTCATGTCGTGGTAAATAGGG GTTGGGGGTATTACTGGTATAGATTACATGTGATAATTCAGCTTCTTTTTTGGTTTGATCCACCAGGGGTTTTAATCTCA ACTGAAATTTGTCAAAAATATATACTGGATTTTGTGATTCTCATGTTTTGCATTTTGACTCAGGCCTTGTATGCGATAGA GGACTCACACTGTGTGACTTAATAGGAGTTCTACATGATTTTTTCAAACGCATGGGTAATGCTCTCTTATACCAATTACC AAAATACTATATGATTTAAATGTTGAATGCAAGTTGGAAACTTAAATGAACAGCCCAAAGCCAAGCTTATTAAGGACAAG CTTTAGTAGAACAATTAATATGTTATTTATCTTAGCGGAAAATTTTGTTCTTGAGTTCAGGCATGACAAAGCTGAAGTTC AAACCTGCTTACAATCCATATACCGAACCTAGCATGGAGATTTTCAGGTGATTCTTTCTGTAAATGATTATTTGAAATGT CATTCATTATCTTGATATCCTGAGATGTATTGATAGTTGATCAAGTACTCTTAACAGTTATCATGAAGGCTTTAAGAAAT GGGTAGAGGTTGGAAACTCTGGCATGTTTAGACCTGAAATGTTGCAACCAATGGGACTTCCTGAAGATGTCCAAGTTATT GCATGGGGCCTTTCCCTTGAAAGGTGAGAAAAAAATGAGAACACCGTAGTTATTTAGTTACTGCTGAGAATAAAATGAAT TGTTTTGTTAAATGAAAAATTTATGTTCAAATCTAATGAAACTATGGGGGAAGTTCAGTACAACATATTGATGGACATCA CAGATTTTAACTTGTTTTTTTACTTGGAAACAGGCCAACAATGATTCTGTATGGGATAGATAACATCAGGGATCTCTTTG GACACAAGGTATCGTTAAGGGATAATTGTAGCAACTCTTTTTAATTATTATTCTTATTATAATAATAATAGTTATTTTAT TATTATTTTGAGTTAATGAAGTGATATTATCCTAAGCTTGTATTTTTAATGTTTTGCAGGTGGATCTTGGCCTTATGAAG AAAAATCCAATATGTCGTCTTGGAATTGACTAA
CDS sequence (LotjaGi3g1v0508200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGAAGAAGCCGTTCTGGGTTACCTACAAAACAACGACGAGATTAGAGATTCCGGCGAGTTTGCAGCTGAACGCGG CATCGACCACAATGAGATAGTGAACATCATCAAGAGCCTCCATGGTTTCCGATACGTCGATGCTGAAGAAATTAAGCGTG AGTCATGGATGCTCACTGATGAGGGGAAGACGTATGCTACTGTGGGATCCCCTGAAATGCAGCTCATGTTGGCAATTCCA CCCGAGGGTATCTCAAAAGATGAACTTCAGAAAAAGCTGGATCCCTCGACTTTCAAGATAGCTTGTGCTCAGGCTGCAAA GAACAAATGGGTTGAGATGGGAAAACAACTCATAACTAGGAAGGTCGAGCACGTGGATGACAGGGTTAAAGACCTCCTTC TTCAAGTTCAGCAGGGACAGGGCATTGGCTCAGATGATATCAAAGCACTCAAAGCAAGAAAGCTTATTGTTCCACAGACA TGGAAAGGTTACTCGGTTAAAAAAGGTCCTAATTATGCTCCAAAAAGAAAGAAGGTTGTCACAGATTTGACGCGAGATAA TTTTCAGAGTGGTGAGTGGAAGGCGTTAGAGTTCAAAGAGTACAATTACAGCGCTAAAGGTCAGCCTCTAGAGGGTGGCC ATCTTCATCCATTGCTGAAGGTACGGGCTCAACTGAAACAAATTTTCCTCTGCATGGGGTTTGAGGAGATGCCGACAAAT AATTTTGTTGAGAGCAGCTTCTGGAACTTTGATGCCTTGTTCCAGCCCCAGCAACACCCAGCCCGCGATTCGCATGACAC ATTTTTTTTGGAAGCTCCTTCAACAACACAGGAACTTCCTGAGGATTATGTTCAGCGCGTAAAGCAAGTTCATGAATCTG GTGGTTATGGGTCTAAGGGTTATGCATATAAATGGAAAAGAGAGGAAGCAAATAAAAACCTCCTGCGGACCCACACAACT GCTGTTTCTTCCAGGATGCTTTACCAGCTGGCACAGAAACCATTTTCTCCAAAAAAATATTTCTCTATAGATCGTGTATT CAGAAATGAAGCAGTTGATCGAACACATCTTGCTGAGTTTCACCAGATAGAAGGCCTTGTATGCGATAGAGGACTCACAC TGTGTGACTTAATAGGAGTTCTACATGATTTTTTCAAACGCATGGGCATGACAAAGCTGAAGTTCAAACCTGCTTACAAT CCATATACCGAACCTAGCATGGAGATTTTCAGTTATCATGAAGGCTTTAAGAAATGGGTAGAGGTTGGAAACTCTGGCAT GTTTAGACCTGAAATGTTGCAACCAATGGGACTTCCTGAAGATGTCCAAGTTATTGCATGGGGCCTTTCCCTTGAAAGGC CAACAATGATTCTGTATGGGATAGATAACATCAGGGATCTCTTTGGACACAAGGTGGATCTTGGCCTTATGAAGAAAAAT CCAATATGTCGTCTTGGAATTGACTAA
Protein sequence (LotjaGi3g1v0508200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAEEAVLGYLQNNDEIRDSGEFAAERGIDHNEIVNIIKSLHGFRYVDAEEIKRESWMLTDEGKTYATVGSPEMQLMLAIP PEGISKDELQKKLDPSTFKIACAQAAKNKWVEMGKQLITRKVEHVDDRVKDLLLQVQQGQGIGSDDIKALKARKLIVPQT WKGYSVKKGPNYAPKRKKVVTDLTRDNFQSGEWKALEFKEYNYSAKGQPLEGGHLHPLLKVRAQLKQIFLCMGFEEMPTN NFVESSFWNFDALFQPQQHPARDSHDTFFLEAPSTTQELPEDYVQRVKQVHESGGYGSKGYAYKWKREEANKNLLRTHTT AVSSRMLYQLAQKPFSPKKYFSIDRVFRNEAVDRTHLAEFHQIEGLVCDRGLTLCDLIGVLHDFFKRMGMTKLKFKPAYN PYTEPSMEIFSYHEGFKKWVEVGNSGMFRPEMLQPMGLPEDVQVIAWGLSLERPTMILYGIDNIRDLFGHKVDLGLMKKN PICRLGID
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | 3 | 56 | 54 | 3.2E-9 | ||
| Gene3D | 7 | 199 | 193 | 7.5E-56 | – | |
| PANTHER | 18 | 474 | 457 | 1.7E-200 | – | |
| PANTHER | 18 | 474 | 457 | 1.7E-200 | – | |
| Gene3D | 58 | 156 | 99 | 7.5E-56 | – | |
| Pfam | 70 | 125 | 56 | 1.2E-14 | ||
| Gene3D | 71 | 125 | 55 | 7.5E-56 | – | |
| TIGRFAM | 166 | 478 | 313 | 6.3E-107 | ||
| Pfam | 201 | 473 | 273 | 1.1E-92 | ||
| SUPERFAMILY | 201 | 473 | 273 | 1.21E-72 | – | |
| Gene3D | 216 | 488 | 273 | 3.5E-117 | – | |
| CDD | 216 | 473 | 258 | 1.69548E-112 | – | |
| ProSiteProfiles | 220 | 481 | 262 | 17.918 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | TRNA binding | Interacting selectively and non-covalently with transfer RNA. | ||
| Molecular function | Nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. | ||
| Molecular function | Aminoacyl-tRNA ligase activity | Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP. | ||
| Molecular function | Phenylalanine-tRNA ligase activity | Catalysis of the reaction: ATP + L-phenylalanine + tRNA(Phe) = AMP + diphosphate + L-phenylalanyl-tRNA(Phe). | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. | ||
| Biological process | Phenylalanyl-tRNA aminoacylation | The process of coupling phenylalanine to phenylalanyl-tRNA, catalyzed by phenylalanyl-tRNA synthetase. The phenylalanyl-tRNA synthetase is a class-II synthetase. However, unlike other class II enzymes, The activated amino acid is transferred to the 2'-OH group of a phenylalanine-accepting tRNA. The 2'-O-aminoacyl-tRNA will ultimately migrate to the 3' position via transesterification. | ||
| Biological process | TRNA aminoacylation | The chemical reactions and pathways by which the various amino acids become bonded to their corresponding tRNAs. The most common route for synthesis of aminoacyl tRNA is by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA and the alpha carboxylic acid group of an amino acid, usually catalyzed by the cognate aminoacyl-tRNA ligase. A given aminoacyl-tRNA ligase aminoacylates all species of an isoaccepting group of tRNA molecules. |
Expression pattern of LotjaGi3g1v0508200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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