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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0508700 |
| Transcript ID | LotjaGi3g1v0508700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cysteine proteinase; TAIR: AT4G39090.1 Papain family cysteine protease; Swiss-Prot: sp|P43296|RD19A_ARATH Cysteine protease RD19A; TrEMBL-Plants: tr|B0BL96|B0BL96_LOTJA CM0216.510.nc protein; Found in the gene: LotjaGi3g1v0508700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:92584990..92587220) extracted from Lotus japonicus Gifu genome v1.2.
CCTTAGAAATCGTCATCATAGTTTTATGAATCTTCACATTCATTATAAATACTAGGATTGTTATTGTTGAGCATGCCACT ATCACATTCTCATTCTCATACTCATTCATATTCATTCCTTTCTCATTCTTAGCCTAACCCTTACGTTACCTTAGTTTTCT CAACATGGTTGATCATCGGATTCTTTTCCTCATGTTTGTGTTCTTCCTCTTCTTCTCCGTTGTCTCCTCCGACGGCGGCG TCGACCCGCTGATCCGTCAAGTGGTCGACGGCGAGGGTTTGGGGGCGGAACACCACTTTTTGGAGTTTAAGCGTCGGTTC AGGAAGGTGTACGTTTCTGAAGAAGAGCGCGGTTACAGGTTCAATGTGTTCAAGTCTAACATGCACCGAGCACGCCGCCA CCAGCTGTTGGACCCGTCTGCGGTTCACGGCGTGACGCGGTTCTCTGATCTGACGCCGATGGAGTTCCGCCACAGTGTTT TGGGCCTCAGAGGAGTAAGTTTGCCTTCTGATGCAGACAGCGCTCCCATTCTTCCGACTGATAATCTTCCGAAGGATTTT GATTGGAGAGAGCACGGTGCGGTTACCCCTGTCAAGAATCAGGGTTCATGTGGATCTTGCTGGAGTTTTAGTGCAACTGG GGCACTTGAAGGTGCTCACTTTCTCTCTACTGGGGAACTTGTCAGTCTTAGCGAGCAACAGCTTGTAGATTGTGATCACC AGGTTTGTTCTGTTTCTTTCTTTTGCTATCACCATGCATAAACTTCAATTGATGGTTTCCTCTGTATTGTACAATTGTTC AATGGTTATGGTTACTGTTTTTGGAGATTCTTACTGACCAAGTGCTATTGCAATAAGTGTGTTTGGGACCTTAAACTCAA TTCTCATTGGCTAAAATCACTTTTAGGTGGTTATACAAATTTGACAATTGATTATTTTAGTTCCAAAATCACTTTTACTT GAAAAATCACTTTTATAGCTAGGTATATCGTGTAATTTCATATCTGGATTTCACAAGAAAATCACTTTTCCCATAATATT CTTCAAACTTCAATTACTTCACAATATTCAACTAATCAATTTCATCAAAATCAATTTTATCCAAAAATCAACTCTGACAA CAGTGGTCCAAATATGAATTTATAGCAACTCAATATATGTGCAAATGTGGATTCCTTAATTAGCAGTTGTTCCTTGCATA TTATGTTGTCTAAACCAGGCCCATTTACATGTGCAGTGTGATCCAGAAGAAGCAGGTTCTTGTGACTCTGGCTGCAAAGG TGGATTGATGAATAGTGCTTTTGAGTACATCCTTAACAATGGTGGAGTCATGCGAGAGGAAGACTATCCTTACTCTGGTA CTGCAGGTGGGACTTGCAAGTTTGATCAAACAAAGATTGCAGCATCGGTGGCAAACTTCAGTGTTGTCTCACGTGATGAA GATCAGATTGCTGCGAATCTTGTCAAAAACGGCCCTCTTGCCGGTAAGTACTAAGTTCATGTTTAGATACATAGTGAAAA ATCATGGTGATCAAAAGTAATTTTCTCTTATCTTTTGCGATTGTCCACTGCATTTATTTGGAGCTATTTTTATAGAGTGG ATGTTGATGACTGATAATCTTGTAACTTTGAATGCAGTGGCTATCAATGCAGTATATATGCAGACATATGTGGGTGGAGT GTCATGCCCATACGTATGTTCAAAGAAGCTGAATCATGGGGTCTTGTTGGTGGGATACGGTTCTGAAAGCTATGCACCAA TTCGGATGAAGCAGAAGCCATATTGGATAATCAAAAATTCCTGGGGAGAGAATTGGGGAGAAAATGGATACTACAAGATT TGCAGAGGAAGGAATATCTGTGGAGTGGACTCTATGGTTTCAACTGTGGCTGCTCTTCATACCACTGGAAACTAATCACT AGGATTTTAACATGTACTTTGGTATTTTCAATGTTAATTTGTTTGATTATTCAAAAAAAAAATGTTAATTTGTTTGATTG TTTGTTTCTTGACAAGGTGAATGTACCAGTTTAGTTTGTTTTGGTAACTAAGCCCACTGGATTTGGGTTTGGAAGCCTCA AATGAATGTCAGGCCCAAGAAAACCACACTATGTAATGTCTTCGTATTAATCTTGTAATGATGTGCATTGACCAAAAACA TAAATCTTGTAATGATGTGCCAAAGTGCCTTCTATGGGGGTGAATTGGCCTTATCCACACCACATTGCTCA
CDS sequence (LotjaGi3g1v0508700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTGATCATCGGATTCTTTTCCTCATGTTTGTGTTCTTCCTCTTCTTCTCCGTTGTCTCCTCCGACGGCGGCGTCGA CCCGCTGATCCGTCAAGTGGTCGACGGCGAGGGTTTGGGGGCGGAACACCACTTTTTGGAGTTTAAGCGTCGGTTCAGGA AGGTGTACGTTTCTGAAGAAGAGCGCGGTTACAGGTTCAATGTGTTCAAGTCTAACATGCACCGAGCACGCCGCCACCAG CTGTTGGACCCGTCTGCGGTTCACGGCGTGACGCGGTTCTCTGATCTGACGCCGATGGAGTTCCGCCACAGTGTTTTGGG CCTCAGAGGAGTAAGTTTGCCTTCTGATGCAGACAGCGCTCCCATTCTTCCGACTGATAATCTTCCGAAGGATTTTGATT GGAGAGAGCACGGTGCGGTTACCCCTGTCAAGAATCAGGGTTCATGTGGATCTTGCTGGAGTTTTAGTGCAACTGGGGCA CTTGAAGGTGCTCACTTTCTCTCTACTGGGGAACTTGTCAGTCTTAGCGAGCAACAGCTTGTAGATTGTGATCACCAGTG TGATCCAGAAGAAGCAGGTTCTTGTGACTCTGGCTGCAAAGGTGGATTGATGAATAGTGCTTTTGAGTACATCCTTAACA ATGGTGGAGTCATGCGAGAGGAAGACTATCCTTACTCTGGTACTGCAGGTGGGACTTGCAAGTTTGATCAAACAAAGATT GCAGCATCGGTGGCAAACTTCAGTGTTGTCTCACGTGATGAAGATCAGATTGCTGCGAATCTTGTCAAAAACGGCCCTCT TGCCGTGGCTATCAATGCAGTATATATGCAGACATATGTGGGTGGAGTGTCATGCCCATACGTATGTTCAAAGAAGCTGA ATCATGGGGTCTTGTTGGTGGGATACGGTTCTGAAAGCTATGCACCAATTCGGATGAAGCAGAAGCCATATTGGATAATC AAAAATTCCTGGGGAGAGAATTGGGGAGAAAATGGATACTACAAGATTTGCAGAGGAAGGAATATCTGTGGAGTGGACTC TATGGTTTCAACTGTGGCTGCTCTTCATACCACTGGAAACTAA
Protein sequence (LotjaGi3g1v0508700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVDHRILFLMFVFFLFFSVVSSDGGVDPLIRQVVDGEGLGAEHHFLEFKRRFRKVYVSEEERGYRFNVFKSNMHRARRHQ LLDPSAVHGVTRFSDLTPMEFRHSVLGLRGVSLPSDADSAPILPTDNLPKDFDWREHGAVTPVKNQGSCGSCWSFSATGA LEGAHFLSTGELVSLSEQQLVDCDHQCDPEEAGSCDSGCKGGLMNSAFEYILNNGGVMREEDYPYSGTAGGTCKFDQTKI AASVANFSVVSRDEDQIAANLVKNGPLAVAINAVYMQTYVGGVSCPYVCSKKLNHGVLLVGYGSESYAPIRMKQKPYWII KNSWGENWGENGYYKICRGRNICGVDSMVSTVAALHTTGN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 5 | 5 | - | – | |
| SignalP_EUK | 1 | 22 | 22 | - | – | |
| Phobius | 1 | 22 | 22 | - | – | |
| Phobius | 6 | 17 | 12 | - | – | |
| TMHMM | 7 | 26 | 20 | - | – | |
| PANTHER | 9 | 354 | 346 | 1.1E-188 | – | |
| PANTHER | 9 | 354 | 346 | 1.1E-188 | – | |
| Phobius | 18 | 22 | 5 | - | – | |
| Phobius | 23 | 360 | 338 | - | – | |
| Gene3D | 30 | 353 | 324 | 5.3E-101 | – | |
| SUPERFAMILY | 43 | 352 | 310 | 2.98E-103 | ||
| SMART | 45 | 101 | 57 | 6.7E-19 | ||
| Pfam | 45 | 101 | 57 | 3.4E-8 | ||
| Pfam | 128 | 351 | 224 | 7.2E-76 | ||
| SMART | 128 | 353 | 226 | 1.2E-110 | ||
| CDD | 129 | 352 | 224 | 5.63006E-105 | ||
| PRINTS | 146 | 161 | 16 | 4.2E-11 | ||
| ProSitePatterns | 146 | 157 | 12 | - | ||
| ProSitePatterns | 293 | 303 | 11 | - | ||
| PRINTS | 295 | 305 | 11 | 4.2E-11 | ||
| PRINTS | 317 | 323 | 7 | 4.2E-11 | ||
| ProSitePatterns | 317 | 336 | 20 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Proteolysis | The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. | ||
| Molecular function | Cysteine-type peptidase activity | Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile. |
Expression pattern of LotjaGi3g1v0508700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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