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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0512500 |
| Transcript ID | LotjaGi3g1v0512500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cysteine proteinase; TAIR: AT4G39090.1 Papain family cysteine protease; Swiss-Prot: sp|P43296|RD19A_ARATH Cysteine protease RD19A; TrEMBL-Plants: tr|Q70I35|Q70I35_LOTJA Papain-like cysteine proteinase-like protein 2; Found in the gene: LotjaGi3g1v0512500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:92941463..92943460) extracted from Lotus japonicus Gifu genome v1.2.
CCTTAGAAATCGTCATCATAGTTTTATGAATCTTCACATTCATTATAAATACTAGGATTGTTATTGTTGAGCATGCCACT ATCACATTCTCATTCTCATACACATTCACGTTCATATTCATTCCTTTCTCATTCTTAGCCTAACCCTTACGTTACCTCTG TTACCTTTGATTTCTCAACATGGTTGATCATCGGATTCTTTTCCTCTTGTTTGTGTTCTTCCTCTTCTTCTCCAACGTCT CCTCCTCCGACGGCGTCGACCCGATGATCTGTCAGGTGGTCGACGACGAGGGTTTGGGGGCAGAACACCACTTTCTGGAG TTTAAGCGTCGGTTCGGGAAGGTGTACGCTACCGAGGAGGAGCATGGTTACAGGTTCAATGTGTTCAAGTCTAACATGCA CCGAGCACGCCGCCACCAGCTGTTGGACCCGTCTGCGGTTCACGGCGTGACGCGGTTCTCTGATCTGACGCCGATGGAGT TCCGCCACAGTGTTTTGGGCCTCAGAGGAGTGGGTTTGCCTTCTGATGCAGACAGCGCTCCCATTCTCCCGACTGATAAT CTTCCGAAGGATTTTGATTGGAGAGAGCACGGTGCTGTTACCCCTGTCAAGAATCAGGGTTCATGTGGATCTTGTTGGAG TTTCAGTGCAACTGGGGCACTTGAAGGTGCTCACTTTCTCTCTACTGGGAAACTTGTCAGTCTTAGTGAGCAACAGCTTG TGGATTGTGATCACGAGGTTCGTTCTCTTTCTTTCTATCACCATGCATAATATGCATTTAAGACATCGATGGTTTCCTCT GTATTTTACAATTGTTCAATGGTTATGGTTACTGTTTTTGGAGATTCTTACTGACCAAGTGTTATTGCAATAAGTGTGTT TGGGACCTTAAACTCAATTCTCATTGGCTAAAATCACTTTTAGGTGGTTATACAAATTTGACAATTGATTATTTTAGTTC CAAAATCACTTTTACTTGAAAAATCACTTTTATAGCTAGGTATATCGTGTAATTTCATATCTGGATTTCACAAGAAAATC ACTTTTCCCATAATATTCTTCAAACTTCAATTACTTCACAATATTCAACTAATCAATTTCATCAAAATCAATTTTATCCA AAAATCAACTCTGACAACAGTGGTCCAAATATGAATTTATAGCAACTCAATATATGTGCAAATGTGGATTCCTTAATTAG CAGTTGTTCCTTGCATATTATGTTGTCTAAACCAGGCCCATTTACATGTGCAGTGTGATCCAGAAGAAGCAGGTTCTTGT GACTCTGGCTGCAAAGGTGGATTGATGAATAGTGCTTTTGAGTACATCCTTAACAATGGTGGAGTCATGCGAGAGGAAGA CTATCCTTACTCTGGTACTGCAGGTGGGACTTGCAAGTTTGATCAAACAAAGATTGCAGCATCGGTGGCAAACTTCAGTG TTGTCTCACGTGATGAAGATCAGATTGCTGCGAATCTTGTCAAAAACGGCCCTCTTGCCGGTAAGTACTAAGTTCATGTT TAGATACATAGTGAAAAATCATGGTGATCAAAAGTAATTTTCTCTTATCTTTTGCGATTGTCCACTGCATTTATTTGGAG CTATTTTTATAGAGTGGATGTGGATGACTGATAATCTTGTAACTTTGAATGCAGTGGCCATCAATGCAGTATATATGCAG ACATATGTGGGGGGAGTGTCATGCCCATACGTATGTTCAAAGAAGCTGAACCATGGGGTCTTGTTGGTGGGATACGGTTC TGAAAGCTATGCACCAATTCGGATGAAGCAGAAGCCATATTGGATAATCAAAAATTCCTGGGGAGAGAATTGGGGAGAAA ATGGATATTACAAGATTTGCAGAGGAAGAAATGTCTGTGGGGTGGACTCTATGGTTTCAACTGTGGCTGCTCTTCATACC ACTGGAAACTAATCACTAGGATTTTAACATGTACTTGGTCTTGTCAAATGTTAATTTGTTTATCAAACATAGTCTTTC
CDS sequence (LotjaGi3g1v0512500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTGATCATCGGATTCTTTTCCTCTTGTTTGTGTTCTTCCTCTTCTTCTCCAACGTCTCCTCCTCCGACGGCGTCGA CCCGATGATCTGTCAGGTGGTCGACGACGAGGGTTTGGGGGCAGAACACCACTTTCTGGAGTTTAAGCGTCGGTTCGGGA AGGTGTACGCTACCGAGGAGGAGCATGGTTACAGGTTCAATGTGTTCAAGTCTAACATGCACCGAGCACGCCGCCACCAG CTGTTGGACCCGTCTGCGGTTCACGGCGTGACGCGGTTCTCTGATCTGACGCCGATGGAGTTCCGCCACAGTGTTTTGGG CCTCAGAGGAGTGGGTTTGCCTTCTGATGCAGACAGCGCTCCCATTCTCCCGACTGATAATCTTCCGAAGGATTTTGATT GGAGAGAGCACGGTGCTGTTACCCCTGTCAAGAATCAGGGTTCATGTGGATCTTGTTGGAGTTTCAGTGCAACTGGGGCA CTTGAAGGTGCTCACTTTCTCTCTACTGGGAAACTTGTCAGTCTTAGTGAGCAACAGCTTGTGGATTGTGATCACGAGTG TGATCCAGAAGAAGCAGGTTCTTGTGACTCTGGCTGCAAAGGTGGATTGATGAATAGTGCTTTTGAGTACATCCTTAACA ATGGTGGAGTCATGCGAGAGGAAGACTATCCTTACTCTGGTACTGCAGGTGGGACTTGCAAGTTTGATCAAACAAAGATT GCAGCATCGGTGGCAAACTTCAGTGTTGTCTCACGTGATGAAGATCAGATTGCTGCGAATCTTGTCAAAAACGGCCCTCT TGCCGTGGCCATCAATGCAGTATATATGCAGACATATGTGGGGGGAGTGTCATGCCCATACGTATGTTCAAAGAAGCTGA ACCATGGGGTCTTGTTGGTGGGATACGGTTCTGAAAGCTATGCACCAATTCGGATGAAGCAGAAGCCATATTGGATAATC AAAAATTCCTGGGGAGAGAATTGGGGAGAAAATGGATATTACAAGATTTGCAGAGGAAGAAATGTCTGTGGGGTGGACTC TATGGTTTCAACTGTGGCTGCTCTTCATACCACTGGAAACTAA
Protein sequence (LotjaGi3g1v0512500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVDHRILFLLFVFFLFFSNVSSSDGVDPMICQVVDDEGLGAEHHFLEFKRRFGKVYATEEEHGYRFNVFKSNMHRARRHQ LLDPSAVHGVTRFSDLTPMEFRHSVLGLRGVGLPSDADSAPILPTDNLPKDFDWREHGAVTPVKNQGSCGSCWSFSATGA LEGAHFLSTGKLVSLSEQQLVDCDHECDPEEAGSCDSGCKGGLMNSAFEYILNNGGVMREEDYPYSGTAGGTCKFDQTKI AASVANFSVVSRDEDQIAANLVKNGPLAVAINAVYMQTYVGGVSCPYVCSKKLNHGVLLVGYGSESYAPIRMKQKPYWII KNSWGENWGENGYYKICRGRNVCGVDSMVSTVAALHTTGN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 5 | 5 | - | – | |
| Phobius | 1 | 22 | 22 | - | – | |
| SignalP_EUK | 1 | 22 | 22 | - | – | |
| Phobius | 6 | 17 | 12 | - | – | |
| Phobius | 18 | 22 | 5 | - | – | |
| Phobius | 23 | 360 | 338 | - | – | |
| Gene3D | 24 | 353 | 330 | 2.8E-101 | – | |
| PANTHER | 30 | 354 | 325 | 4.8E-190 | – | |
| PANTHER | 30 | 354 | 325 | 4.8E-190 | – | |
| SUPERFAMILY | 43 | 352 | 310 | 1.02E-103 | ||
| SMART | 45 | 101 | 57 | 2.3E-20 | ||
| Pfam | 45 | 101 | 57 | 2.4E-9 | ||
| SMART | 128 | 353 | 226 | 1.0E-111 | ||
| Pfam | 128 | 351 | 224 | 3.4E-76 | ||
| CDD | 129 | 352 | 224 | 6.63103E-105 | ||
| PRINTS | 146 | 161 | 16 | 4.2E-11 | ||
| ProSitePatterns | 146 | 157 | 12 | - | ||
| ProSitePatterns | 293 | 303 | 11 | - | ||
| PRINTS | 295 | 305 | 11 | 4.2E-11 | ||
| PRINTS | 317 | 323 | 7 | 4.2E-11 | ||
| ProSitePatterns | 317 | 336 | 20 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Proteolysis | The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. | ||
| Molecular function | Cysteine-type peptidase activity | Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile. |
Expression pattern of LotjaGi3g1v0512500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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