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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0010900 |
| Transcript ID | LotjaGi4g1v0010900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | homeobox-1; TAIR: AT1G62360.1 KNOX/ELK homeobox transcription factor; Swiss-Prot: sp|P46608|HSBH1_SOYBN Homeobox protein SBH1; TrEMBL-Plants: tr|A0A151SU49|A0A151SU49_CAJCA Homeobox protein SBH1; Found in the gene: LotjaGi4g1v0010900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:1372175..1376568) extracted from Lotus japonicus Gifu genome v1.2.
CACATATCAAGCACACAAGAAGTGAAAAGTTGAATAGAGAGAGAGAAAGGGTGATTCCGTGCCCCATAAACCTATCTCCA TCCATCACCAGTGTGAGTAGGTGACTTGTTCCTCTTCCTTCTTCTCCTCGATTTGATATATCGTTCCTCCTTATCTCTCC CTCTCTCTTCTCTGTCTTCTACTTTTATTTGGCAGTAAAATGACAGTAGTGTATCAGTTGCAGTGCAGGAAAAGAGGGGG AGAGTTTTCATTGGGAACGTAAAAGCTAGCCTTTGTTTGTACCACTCTCTTCACTTCTCTTGTACAACTCCAGTTCATCA CTACCGCTCTCTCTGTATGCCCCGCGTGCACTCCTCTGCTCCTACCTTCACCCTTTCTACCTCACTCCTCGTTCTCACCA ACCTTATATCATAGTTAATGCTCCAATGGTTGGTTAGAAAGTAACTTAGAAAGATTAATTAACTCTCATTTCTGCAAGCA ATTTTGTGCAGGCTTTGTCAGATTACTCAAAGGGGGAAAAACCAAACCCCTTCAAAGACAACTCATGTTGCTGTAGCTTC CACTATCACTATTTTGGAACTTCCGTGAAAAGTTCTGAAACTCATACCCATAAAACCCGGGAGAGCCCCCAAGACAAACA ACCATCTTCTGAGACTTCCATAAAAAATGACATAAAGAGAGTAAATAACAAGAAGGCTAGTGAGTGATTGAACTAGTGAA TGAGTGTGCATGTGCTTTGTTGAGGAGTTATTAATTAGTAGCTAGAAGATGGAGGGTAGTTCTAGTGTGATGATGGGTTT TGGAGAGAACAATAACAATAGTGGGATTTATCCTATGACCATGATGCCTGCTTTCATGAATTCTAGCACTCTTAACAACC CTAATCAAGACACAACAAACAGTTTCTTCTTCCCCATGCCTTGCACTAGTAATCATGATCCTAACCCTAACAACCTCAAC ACCAACACCAACAACAACACAGGGTTAGGGCAATATTTCATGGAGGATCAGATCAACCACAACATCAACAAAGATGGAAG CTCTTCTACTTCTGCTGCTGCTGTGAAGGCCAAGATCATGGCTCATCCTCACTATCAACGTCTTCTAGCAGCCTACGTCA ATTGTCAAAAGGTGAGGAAAAAGATAAAAAAAAAGCTTAATCTTGACTCAACTCATGATATCAAGGAACGTGAAAAAAGT AGAGAAATAGTTATTGAGAATGATGCTTATTTTTTAATTTTACCTTCTATCTACACTCTTTTCTTGGCAAATTTGGATCT GAGTTGTATGACATTAGTATTGAGAACTGTGAAGTAATTAAAAATGACATTAAAAATCAACATGATAGAAGGGTTGAAGA AGAAATTAAATGATACTAACAACCACTTTACTAGCTGCGTCATGTTAATTTTTTTTTCTTGATTTTGCAGATTGGGGCTC CGCCTGAAGTAGTGGCAAGGTTAGAAGAAGCATGTGCATCTGCGGCGGCGATGGCCGGTGTTTCAGGTGGGACAGCATGC ATCGGTGAGGATCCGTCGTTGGATCAGTTCATGGAGGCTTACTGTGAGATGCTGATAAAGTACCAGCAAGAGCTCTCTAA ACCCTTCAAGGAAGCCATGCTCTTCCTTCAAAGAATCGAGTGCCAGCTCAACTCTCTTGCCATTTCTTCTGATTTTGGTG ATGATCCATCTTCTTTTCTCTTTACTTTCTTCTCCAGCTTTCACTTAGGTTTTACTTAACATAACTTTCAGACAGCTAGA ATTCAAACATAAACTTTTTTCTTTAATTGATTTTGGGTTTAAAATTAATTCTAAAAGGATTATTCAGTGCATGTCTGGAT ACACGATGAAGTTAAAATCACGGTGGACAATTGCAGAAGCCAAAAGAAGTTGATATCCAAACATGCTTTTAATTTTTGTG CTTGACTATTTATGTATACACCTTATGTTTATGTTTTCATTATGAATATAGATGCTTGAAATTCTTTTTTTTTTTCATTA AGAAAGTTTCAAAAACGAGCATGGGCACATGTTTTCTCGGTGCCCTATGTTCAAAGCTTGTCTTTTCCTGTGAAACTGTT GTTGGCGTGGTGCTAATCTGCAAACTCTCTTCTCGGTATTAGTGCATGTAGTAAACTTTTGTTTGCATCCTATAAACTCT TCAGTTCCTGCATGCTGTTTGAGATATAATTTAATTTTAGCTGTTTTTGGAAATGAAAGTCTTCCCAAATAGCTTCCTTT GTGTATTTCCCCATTCAGCTGCTCTTTGATTTGCATCTGAATACAATGAAATGCTCTACTTACCTGCATTGCGTATTGAG GTTTTGTGAAGAATCTAGGGTTTCTTTGAACTGGTTCTCAAGTGTGCTTATGGCGAGTAGTTTTTGATTGTTTGGAAATG TCAAATGTCAAATGTCAAATGAAGGAAGCTTATTACAGTGATATTATATCACTATTTATGATGTTTTAACAAATGTGACT CATGTGCCACAAATGCGGTTGCAAAGTGGTCCGAGACCTCTAACACAAGGATGTGGCATTCCATAATTTTAAACCTTGAT AAACTCATAAACATCTAACAAAAGCTTTCTCAAGCTTCCAACACTGTATGCGCCAAAAGTAGTAGTGTTTTTATGTTAGC GACCACAAAAGAGTAGTAGTGTTTTTCTGTTTACATGAAAGAATAAAATCGGCTATCCATTTTTCTAGTTAATCAGAACT GAGAAGTTTACCTTAATGTTAGTACATGTTTTGTCTAATGTGTTTTCAGAACTCAGGAAAGTAGTAGTTGTTAATTTCTG GATTGTTTTAACTGATTCTGAAATTCTTCCATGACTGATGGCAATGCCTTTCTCTATTGATTTTGTTTAAAAGGTTCCTT CATGAACGCATTAATCGTATGACTGAATGAAGATTGTTATATGCAATGTAGATGAGTTCAGTGTGGTAATAGTCTGTGTC TTTGGTTTTAAATATTGAAGTGATGAATTAATTTGTTTCCTTTCTCTGTATTTACTATGATTACCTCATTGTATTTTTCC ATATAATGAATCATCGTGGATGTTTGGATAAACTGGAAAATCACGGTTAGTCAAAATCGTGATGGATAGAAGCAACTAAC GTATGCTTTTGTGGTTGGCCACCGTGATTTTGACTTCATTTTCCACTGTGTATTCTATCAGACTTCCTATATTGCCTTGT CTGCCCTCTCTATCGAGAATGTAGCCTTATTGCCTTACTATTGTGCTTAATTACCATAATTGATTCATGTGATGATCAGC TTGTGCTGAAGCTACCGATAGGATTGGATCATCAGAGAATGTTGATCTACACAATAACATGATAGATCCCCAGGTAGAGG ACCAAGAACTGAAGGTTCAACTTCTTCACAAGTACAGTGGATACCTAGGCAATTTGAAGCAGGAATTCATGAAGAAGAGA AAAAAAGGCAAGCTGCCTAAAGAAGCAAGGCAACAATTACTTGAATGGTGGAGCAGACATTACAAATGGCCTTACCCATC GGTATGTTGCATCTATAATTATATCATATGATCCTTCCCAATATTTGGCTAGATAAATTTGAGATTTGGTTTCCATGCCA TCAGGGAAATCTCGCATTCACGTAGTCAATCAGTTTAGCTGATCTTGATTGGTCTTTTCACAATTTAAGTTAACTTGAAT TGGAATGTGAGCCCTCTGAGCTCGATCGGATGCACAATCCTTGAATGCGTGAATGCTGGACTCGTTGTGGCAGGAATCCA AATCCATACATGAATTTGAGATTACTAGTTAAGAATTTGTGATAACGATTTATTTCATCTGTTAGGGGAATAATGTAATT TCATGTGTTAACAGGAATCACAGAAGCTTGCGCTTGCAGAGGCAACAGGTCTGGATCAGAAGCAAATTAACAACTGGTTT ATCAATCAGAGGAAACGGCACTGGAAACCTTCTGATGACATGCAATTTATGGTGATGGAACCAAGCCACCCACACCAGTA CATGAACAGTACTGTTCTGGGCAATCACTTTCCCATGGATCTCTCCCACACAATGCTCTGAAAATATTTTGGTGCTTCTG ATCCGAATGGCTATATATTATTTCACAATGCAGGCATATAATTTGAAAACACGTAGTAATTATGTTTCTTTAACTAGTAA GGCTATATAGCTATTTCAAAGTATGTTACATGTTTATGTTTTTATAAAAAAGTCTTTTGTAGCTTAAGTCTATGCCTGAT CCCCTTGAGAAATTATCCGGTTCGAATTTAGTCCCATGTTCATGGCTCCAAATAAGTTTGTCTTTGAAAGTGTACAATGC AACATAATTAAAATCTAAAAAAGAAAGTCTATACTATGGGTGGGAGTGTTATTTATGAGAAATTTCATTTGCAC
CDS sequence (LotjaGi4g1v0010900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGGTAGTTCTAGTGTGATGATGGGTTTTGGAGAGAACAATAACAATAGTGGGATTTATCCTATGACCATGATGCC TGCTTTCATGAATTCTAGCACTCTTAACAACCCTAATCAAGACACAACAAACAGTTTCTTCTTCCCCATGCCTTGCACTA GTAATCATGATCCTAACCCTAACAACCTCAACACCAACACCAACAACAACACAGGGTTAGGGCAATATTTCATGGAGGAT CAGATCAACCACAACATCAACAAAGATGGAAGCTCTTCTACTTCTGCTGCTGCTGTGAAGGCCAAGATCATGGCTCATCC TCACTATCAACGTCTTCTAGCAGCCTACGTCAATTGTCAAAAGATTGGGGCTCCGCCTGAAGTAGTGGCAAGGTTAGAAG AAGCATGTGCATCTGCGGCGGCGATGGCCGGTGTTTCAGGTGGGACAGCATGCATCGGTGAGGATCCGTCGTTGGATCAG TTCATGGAGGCTTACTGTGAGATGCTGATAAAGTACCAGCAAGAGCTCTCTAAACCCTTCAAGGAAGCCATGCTCTTCCT TCAAAGAATCGAGTGCCAGCTCAACTCTCTTGCCATTTCTTCTGATTTTGCTTGTGCTGAAGCTACCGATAGGATTGGAT CATCAGAGAATGTTGATCTACACAATAACATGATAGATCCCCAGGTAGAGGACCAAGAACTGAAGGTTCAACTTCTTCAC AAGTACAGTGGATACCTAGGCAATTTGAAGCAGGAATTCATGAAGAAGAGAAAAAAAGGCAAGCTGCCTAAAGAAGCAAG GCAACAATTACTTGAATGGTGGAGCAGACATTACAAATGGCCTTACCCATCGGAATCACAGAAGCTTGCGCTTGCAGAGG CAACAGGTCTGGATCAGAAGCAAATTAACAACTGGTTTATCAATCAGAGGAAACGGCACTGGAAACCTTCTGATGACATG CAATTTATGGTGATGGAACCAAGCCACCCACACCAGTACATGAACAGTACTGTTCTGGGCAATCACTTTCCCATGGATCT CTCCCACACAATGCTCTGA
Protein sequence (LotjaGi4g1v0010900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEGSSSVMMGFGENNNNSGIYPMTMMPAFMNSSTLNNPNQDTTNSFFFPMPCTSNHDPNPNNLNTNTNNNTGLGQYFMED QINHNINKDGSSSTSAAAVKAKIMAHPHYQRLLAAYVNCQKIGAPPEVVARLEEACASAAAMAGVSGGTACIGEDPSLDQ FMEAYCEMLIKYQQELSKPFKEAMLFLQRIECQLNSLAISSDFACAEATDRIGSSENVDLHNNMIDPQVEDQELKVQLLH KYSGYLGNLKQEFMKKRKKGKLPKEARQQLLEWWSRHYKWPYPSESQKLALAEATGLDQKQINNWFINQRKRHWKPSDDM QFMVMEPSHPHQYMNSTVLGNHFPMDLSHTML
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 13 | 352 | 340 | 1.4E-164 | – | |
| PANTHER | 13 | 352 | 340 | 1.4E-164 | – | |
| SMART | 97 | 141 | 45 | 3.5E-19 | ||
| Pfam | 98 | 137 | 40 | 3.7E-22 | ||
| SMART | 148 | 199 | 52 | 7.9E-26 | ||
| Pfam | 152 | 197 | 46 | 3.2E-22 | ||
| Pfam | 233 | 254 | 22 | 5.8E-9 | ||
| ProSiteProfiles | 233 | 253 | 21 | 10.842 | ||
| SMART | 233 | 254 | 22 | 8.7E-7 | ||
| Gene3D | 251 | 323 | 73 | 3.0E-21 | – | |
| ProSiteProfiles | 253 | 316 | 64 | 13.021 | ||
| SMART | 255 | 320 | 66 | 2.3E-12 | ||
| SUPERFAMILY | 255 | 329 | 75 | 4.71E-19 | ||
| CDD | 265 | 317 | 53 | 1.93533E-12 | ||
| Pfam | 273 | 312 | 40 | 7.0E-17 | ||
| ProSitePatterns | 291 | 314 | 24 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi4g1v0010900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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