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LotjaGi4g1v0033200.1

Overview

Field Value
Gene ID LotjaGi4g1v0033200
Transcript ID LotjaGi4g1v0033200.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Beta xylosidase; TAIR: AT5G64570.1 beta-D-xylosidase 4; Swiss-Prot: sp|A5JTQ3|XYL2_MEDSV Beta-xylosidase/alpha-L-arabinofuranosidase 2; TrEMBL-Plants: tr|A0A072UQA9|A0A072UQA9_MEDTR Beta-xylosidase/alpha-L-arabinofuranosidase-like protein; Found in the gene: LotjaGi4g1v0033200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:4043168..4050216) extracted from Lotus japonicus Gifu genome v1.2.

TAATATATTATGTCCTGCCTCTCATTTTTGTTTTCTCTTTTTCTAATTATTCATTGCATTACACTTTTAATCATACATGT CACTTTTATCTCTTCCATTATTTAGGGTTCTCACATTTGAGATCGAGAGACGTATGCAACCCGTAGATGGTGGTGAAATT TAACACTAGGAGGTTTCAAAAGGGGCTAAAGATTAAAAAAAATATAGTTCGCATATACATGTATCACATGTAAGAAAAAA AATTAAAAAGCTAAGGGTCACGAATAATATTAAATAAAATCTGAAAATATTTTTTTTAAATAAATCTGAAAATACTATAC ATGTTTTGTTTAGATAATAAAGAGAATTATTAGATTGGATCATCAAGACCGTACAAAATCATTCCTAGTTTATCAAATGA TGTTCACTTGGATTTTTCAATAAAAATGGCAGCCACAAATCATTTATGTTGATCCAGCCAAAAGAACTCACAAGATCATG TTGGGATTTGGACTCCCCTCCAGCTAAACTTCAAAAGATCGCTGTTAGTGAAATCACATATAGCAAACCCTTTGCCATGC AACATTTGTGTCCAATTTCTTTCAATGAGTGTTGTGTTGTGTTCTCTTCTATGTGACTTGCCCTGCTTTGTTTTCTTCAC TAGTCTTTTTACCCAATTCTCAGTTTTCACTCTTCACAATGAGGCTAGACCAAAGCTAGCCGCCACAATTCCCTCACATG ATTTAGTTACCCTCTCATGCTGATTCTCAGTGCTGACCCTTTATTCCAATTTACAAGAAAAATTCAACCAACAACAAATC ATCATTAATGCAATTTTTTATATGCACTGCAAGTTGAGCTTCCAAACAAAAACAATCACTCTTCATGAAACATGGAAAAG TTTTTTCATTGTTTCACGGACTAGTTTAAGCTCCACAACTTGCTGATCAAAACTACACAGAGATTCCCTCCCATGTTATT TTCCACTTTGTGCCAAAACCAACTACATATAACCTGGTCTTACTTCTTTCACTCAAATCAACCATCACGGGTTGCTACAA AACAATGTGTTATTATTATTAACATTTTGTTAATTTATGCAACTTTTCATTTTCAGCGCCTTCTAAGATAGTACATATAG CTGAGTTAGATTCATAACAAGCAGAAACACCCCTTTTGCTTCTTTTCTTTGTGCTATAGTCTTAAGGGTCACAATGCTCT GTTCTGAAAACAGAGCACCCAAATGCTCTGTTTTGCTCTGCCTCTTGACACTATTTACCACCATTTTGTTGAGTTGTGGC CTGGTTTGGGGTCAAACAACACCCAATTTCGCCTGCGATGTTGCGAAGAACCCGGCATTGTCGGGGTACGGGTTCTGCAA CAGGTCATTGCCGGTGAATGCGAGGGTGGCGGACCTTGTGGGGAGGTTGACATTGCAGGAGAAGATAGGGAACTTGGTGA GTGGCGCGGCTATTGTGAGCAGGCTTGGGATTCCAAAGTATGAGTGGTGGTCTGAGGCGCTTCATGGAGTGTCGAATATC GGTCCCGGGACGCGGTTTTCCAATGTGGTTCCCAGAGCAGCCAGTTTTCCTATGCCTATCCTCACTGCAGCTTCTTTCAA CACTTCATTGTTTCAAGCCATTGGAAAGGTGACGATTCTATTCTCCTTCTTATCTAAAGCATGTTTTTGAAGTTTTCACA CCTCTTTTATTCTGGTGATAGTTCTGAAGGGGTTCCTATAAAAAATGGGAAATGTGGTAGCTTTTCCTTGTTTGTTGAAT GAAGAAAGCTATGAACTTGAGTCATTTAAGCTGACAATTCTTTCAATAAGTCTTATGATGTTTGGTTGAAATTTTATTGT GCATGTTTGAGTATTATAAGCCTTTATGGAAGGTTATTGCTACTTTTAGAATTTTCTTCTATTGCATTCATAAAGCTTCA TCATTGATTTAATCTAGTGAAAGCCAAAATAAGTGCCAAATTTTACTGGCTTTTTTTTTTATATCAATGAGGCTGAAACT TTAGATTGTTGATTAGAAGGAGTAGTCTGCAAGCTTTTTCAATTTGGATCCTATGCAGCAGAGGTTCTCTGCAGCTCCCT CCTGCAGAATTATAGGCCATTGATTTTTGTAATCAATTCAATGGCCAGGATGAATCTTAATAAAAATAGCATATTAAATA AAAAAGTTTATGATGATTTATGGCCTGCAGAGAATCTGAATTCAAGTTTTTTAGGTACAAATTCTTCATTGAACTATAAT AAATCAAACAAAATGCAGGTAAGTTCTTAGTGGGAATTTGCAGAAATTTGATGCATACATATTTTGGTATCTAGTGTTTC ATATTGCTGCAGAATGATCAACTGTGTAAATAACCTATACTTACACTCAACACATAAAAAGTGTTTCAACTTTCAAATGG TGTTTATGGCTAATTTCTGCTCATCACAGGTAGTTTCAACAGAAGCCAGAGCAATGTACAATGTAGGTTTGGCTGGTTTG ACATATTGGTCACCAAACATTAACATATTCAGGGATCCAAGATGGGGAAGAGGTCAAGAAACACCAGGGGAAGACCCTGT GCTTGCAAGCAAATATGCAGCGGGGTATGTGAAAGGTCTGCAACAGACTGATCATGGGGACCACAACAAGCTCAAAGTTG CTGCCTGTTGCAAACACTATACAGCATATGATATAGATAACTGGAAGGGTGTTGAGCGTTACAGATTCAATGCTGTGGTA ATGTAACATTAGTTGAAAAATTTAAGCATAAGTTCATGTGTTTATTTGGATTCTCTGTCGCAGAGATTCTCTACAGCTCC CTCCTACAGAATTATGGACCATTAGTTTTTTTAATCAATGGCTAGGATCAATCTAAATAAAAATTAGTTTATTGAATTGA AGATTTCGTTGCGATTTATTGGCAGGGGCTGCAGAGAATCTGAATGTGTGTTTATGAGGATGGGAATGTGAAAGGATCAT TTTCATCATTTTTTGTTGTTTTGCTTGTTGATTTTTGTTAGGTGACACAACAAGATTTGGATGATACATACCAACCACCA TTTAAGAGTTGTGTGATTGATGGAAATGTTGCCAGTGTGATGTGTTCCTACAACCAGGTTAATGGAAAGCCTACCTGTGC TGATCCTGACCTCCTGAAGGGTGTTATCAGAGGCCAATGGAAGTTAAATGGGTATATTTCAACCCTCATTTAAGTTTGGA AATTTATTCGTGTACATCCGCATAGTACAACACCCAATAGTCACCTAGAGTGAAAAAGAAAGAGAAGTGAGAGAAATACT GGATGTGATATGATAAGAAAAGAGAGGTAGATAGGAAAATAGAGTGTCTATAAGGTGTTTAACTGTTAGGTTGTCTAAGT ATGACTCTTAATGTTTGTCCTCCTTGTTTGAAGTTATGTTTTCTTTCACAATAACATGAATATATTGGCCTATGCAGATA TATAGTTTCTGACTGTGACTCAGTAGAAGTGCTTTACAATGCTCAGCATTACACCAAGACTCCTGAAGAAGCTGCAGCCA TATCCATTCTTTCAGGTAAACTAGGTGTGAAAAGACTACATAATCATAGATTCATAAGAAACTGTTTGAGTTATCAAGTG ATTGTAACATTGTCAATGGCAAAAGTCTTGGATTTTGGATTGGTTGGAATTTTAGTTAAATTTATGTAAATGTTTATGAC CTACCTATATGAGTTTATTTCTTAAGCTACTCAAATCAGCTTATGAATAAGTGTTTTACATATCAATAATATATTCGTAC TTTATTTCGATAAATCTTTCAAATTAGCTTACGAATATGTGCGTATGCGATGAGCGCTTATTGAAAAGTGCGTAATTAAA TTGTTTACCAAACACACCCCAAATGTATTAACTTAACTTTGTTGTGGACAAATTTTGACATTGCAGGGCTGGACTTGAAT TGTGGTAGTTTTCTTGGCAAACATACAGAAGATGCAGTCAAGCAAGGGCTTGTACATGAAGCAGACATTAGCTATGCCGT CTCCAACAATTTTGCCACCTTGATGCGTCTCGGATTCTTTGACGGCGATCCGAGGAAGCAACCTTATGGAAAACTTGGTC CGAAAGATGTCTGCACTTCAGCAAACCAGGAGCTCGCCCGTGAAGCTGCAAGACAAGGAATTGTGTTGCTTAAGAACAGA CCAGGATCACTGCCTCTTAATGCCAAAGCCATTAAATCATTGGCAGTTATTGGCCCCAATGCTAATGCTACAAGGGTAAT GATTGGAAACTATGAAGGTATCAACATTTCTTCCAACTCTTAATAACTTGTTTTGGCATGTTGTGACTTAGCCATGAGGA CATAGACTTGGGAGACATACTGAATTGGTGATTTATCAATTATTTCTATGTAGAAGAACCAAATTTATTAAGGAGCAAAT TCTCATTTGGAACATAAATTTGGTATTCAAAAGATTGTTACACCAATTTTTTTCTATTTACTAAGACCAAATTGATGTTA TTTAAAGGTTGGTTTTCCAAAGGTTCTAAGACTAATGTTTACTCAATCATTAACTATAGTGTAGGGAAAATGTCACAATG CTTGCTACTGCTAGAAATATAATATAGAACCACCATGTGTTAATTATCCAGCAGTTTGAACTTTGGAATAGTTGGTTCAT GACACGATATCAGATCCTCTAAAACCTAATGATCTATCCTTGTTGCCCCATTATTCTAGTAAAAAGTCGAAGTTTAGCAC AAGGTAGGTGCTACGCTATCCGCCATTAACAACCCTGGTTCGTACATTTACCCAACAACTTAAGCATTTGGGATAGTTGG TTCATGACATTTACTAGAAGTTGAAGCCATGTTATGTTGCCTTTCTACTTAACATCATATTCAACAAAGTTCTAAATTTT TTGCAGGCATTCCATGCAAGTATATTTCACCCTTACAAGGTCTAACAGCATTGGTTCCTACAACCTATGCTGCTGGCTGT CTTGATGTGCACTGTACCAATCCAGTACTAGATGATCCCAAAAGGATTGCAGCCTCTGCTGATGCAACTGTGATTGTGGT GGGTGCAAATCTAGCAATAGAGGCAGAGAGTCTTGATAGAGTCAACATTCTTCTTCCAGGACAGCAGCAACATCTAGTCA CTGAAGTTGCAAATGCAGCAAAGGGACCTGTTATTCTTGCCATAATGTCAGGAGGATGCATGGATGTGTCTTTTGCCAAA ACCAATGATAAAATCACAAGTATATTATGGGTTGGGTACCCTGGAGAAGCTGGTGGAGCTGCCATAGCTGATGTGATCTT TGGTTTCCATAATCCAAGTAGGGTTATTTGATTCTTTTCTAAGTAGTTTTCTGAATTTAAAAACTGTTTTTAGAAACATA TATTAAACTTGATTTTTAAAAGAGAAAAGAAAAAAAGCTGTTTGAAAGATATGTTTTTCAATGTTGAAATACATGTGGCT TGAAAACTAAAAACAGAAAAATATATATCGTGCCTTGTTTTATTCCCTTCTCAGTTTTTGAATTTAAAGCCTAATTTCAG AAACAAATTTTACAACCTGTTTTTCATGAGAAAAGAAAAGAAAAATAGTTTGAATAAGATGTTCTGCAAAGCTGAAAGAC TTATGACTTATAAACTAAAAACAAAAACTGAAAACAGCTGTGAGGTGTCTTGAGATTTTAGTTTTAAAAAATGAAAATAA AAAGTTTTAAGAACTGTTTCACAAAACAATAATCAAACAGCCACAAAATCATTTTTCCTCATAGCATATATTTTCTTAAG AGTTTGGAACTAAAAGATGATTTTTTTCCTGACTCAGGTGGAAGGCTTCCCATGACATGGTATCCACAATCCTATGTAGA CAAGGTACCAATGACCAACATGAACATGAGGCCTGATCCAACCACAGGCTACCCTGGCAGAACATACAGATTTTACAAAG GGGAAACTGTTTTTTCATTTGGAGATGGATTAAGCTACTCCACTATTGAGCATAAGTTAGTTAAAGCACCACAGTTGGTT TCTATTCCCCTAGCTGAGGATCATGTGTGCCATTCCTTAAAATGCAAGTCACTTGATGTTGCTGGTGAGCATTGTGAAAA CTTGGAGTTTGAGATTCACCTCAGCATCAAGAACAAGGGGAGAATGAGCAGTGATCACACTGTGTTCTTGTTCTCTTCTC CTCCTGCAGTGCACAATGCACCTCATAAACACTTAGTGGGATTTGAGAAAGTTCACTTGGAAGGAAATACAGAAGCATTG GTTAAGTTCAAGGTGGATGTTTGTAAAGATTTGAGTGTGGTTGATGAACTTGGCAACAGAAAAGTTGCATTAGGACAGCA TTTGCTTCATGTGGGTGACTTGAAGCATGCTTTGGGTGTGATGATTTGAATCAAGCCTTCAAATCATTTGCACTGAGTCT TTTTTCACACCTCACTGGTTTCCTTATAAAAAATTTAAGGTGAACCAGGAATAAGGTTTGAGGTAATTCTGTTATTGAAA CAAATTTCTCTGACTTTGTTTTTATTCAAACAAAAAATTGAAATCAAAATCAAGTTAAGTAAAGCCTGCGCAACTTTTTT ATCTGAAAAATATGTTTAGAGATGTTTTTACATCATTTAATGTAAGTCTGTGGATTTATTTGGGTAAATGGCCTAATCAA ATTTTTATGTCAAACAATACTTATCACGTAAGTCTTAATTCATAAGTTTATTTGATGGTAAAAAAGCTATATTTATTTAT AAGCTAATATGACAAACTTATCAAAATACTGTTAAAAGAGTTTGTCCCCGAAGAGTTTATAAGTTTACTCTTTTTCCACA CCTCACTGGTTGTCGTAATTTTTTTTCAGCTTTTGATTTGGTTGTATTTACTTTTGTTAGACACTGGTAATTCTGTGACA GATTTTCTTGCTTGGAACGCAAACCACCTGTTTTGGATGGAAGAGGTTCTTTTAGTTGTGTTTCATTTCGTGAACTCTGA TGTATTTTTTCTTTTGCCTGTTCGCTTTTAATATATGATAGCTAATGTGTGTGTAAACCAAAGCACGATCAATAATCAAT TAAATTCCC 

CDS sequence (LotjaGi4g1v0033200.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCTCTGTTCTGAAAACAGAGCACCCAAATGCTCTGTTTTGCTCTGCCTCTTGACACTATTTACCACCATTTTGTTGAG TTGTGGCCTGGTTTGGGGTCAAACAACACCCAATTTCGCCTGCGATGTTGCGAAGAACCCGGCATTGTCGGGGTACGGGT TCTGCAACAGGTCATTGCCGGTGAATGCGAGGGTGGCGGACCTTGTGGGGAGGTTGACATTGCAGGAGAAGATAGGGAAC TTGGTGAGTGGCGCGGCTATTGTGAGCAGGCTTGGGATTCCAAAGTATGAGTGGTGGTCTGAGGCGCTTCATGGAGTGTC GAATATCGGTCCCGGGACGCGGTTTTCCAATGTGGTTCCCAGAGCAGCCAGTTTTCCTATGCCTATCCTCACTGCAGCTT CTTTCAACACTTCATTGTTTCAAGCCATTGGAAAGGTAGTTTCAACAGAAGCCAGAGCAATGTACAATGTAGGTTTGGCT GGTTTGACATATTGGTCACCAAACATTAACATATTCAGGGATCCAAGATGGGGAAGAGGTCAAGAAACACCAGGGGAAGA CCCTGTGCTTGCAAGCAAATATGCAGCGGGGTATGTGAAAGGTCTGCAACAGACTGATCATGGGGACCACAACAAGCTCA AAGTTGCTGCCTGTTGCAAACACTATACAGCATATGATATAGATAACTGGAAGGGTGTTGAGCGTTACAGATTCAATGCT GTGGTGACACAACAAGATTTGGATGATACATACCAACCACCATTTAAGAGTTGTGTGATTGATGGAAATGTTGCCAGTGT GATGTGTTCCTACAACCAGGTTAATGGAAAGCCTACCTGTGCTGATCCTGACCTCCTGAAGGGTGTTATCAGAGGCCAAT GGAAGTTAAATGGATATATAGTTTCTGACTGTGACTCAGTAGAAGTGCTTTACAATGCTCAGCATTACACCAAGACTCCT GAAGAAGCTGCAGCCATATCCATTCTTTCAGGGCTGGACTTGAATTGTGGTAGTTTTCTTGGCAAACATACAGAAGATGC AGTCAAGCAAGGGCTTGTACATGAAGCAGACATTAGCTATGCCGTCTCCAACAATTTTGCCACCTTGATGCGTCTCGGAT TCTTTGACGGCGATCCGAGGAAGCAACCTTATGGAAAACTTGGTCCGAAAGATGTCTGCACTTCAGCAAACCAGGAGCTC GCCCGTGAAGCTGCAAGACAAGGAATTGTGTTGCTTAAGAACAGACCAGGATCACTGCCTCTTAATGCCAAAGCCATTAA ATCATTGGCAGTTATTGGCCCCAATGCTAATGCTACAAGGGTAATGATTGGAAACTATGAAGGCATTCCATGCAAGTATA TTTCACCCTTACAAGGTCTAACAGCATTGGTTCCTACAACCTATGCTGCTGGCTGTCTTGATGTGCACTGTACCAATCCA GTACTAGATGATCCCAAAAGGATTGCAGCCTCTGCTGATGCAACTGTGATTGTGGTGGGTGCAAATCTAGCAATAGAGGC AGAGAGTCTTGATAGAGTCAACATTCTTCTTCCAGGACAGCAGCAACATCTAGTCACTGAAGTTGCAAATGCAGCAAAGG GACCTGTTATTCTTGCCATAATGTCAGGAGGATGCATGGATGTGTCTTTTGCCAAAACCAATGATAAAATCACAAGTATA TTATGGGTTGGGTACCCTGGAGAAGCTGGTGGAGCTGCCATAGCTGATGTGATCTTTGGTTTCCATAATCCAAGTGGAAG GCTTCCCATGACATGGTATCCACAATCCTATGTAGACAAGGTACCAATGACCAACATGAACATGAGGCCTGATCCAACCA CAGGCTACCCTGGCAGAACATACAGATTTTACAAAGGGGAAACTGTTTTTTCATTTGGAGATGGATTAAGCTACTCCACT ATTGAGCATAAGTTAGTTAAAGCACCACAGTTGGTTTCTATTCCCCTAGCTGAGGATCATGTGTGCCATTCCTTAAAATG CAAGTCACTTGATGTTGCTGGTGAGCATTGTGAAAACTTGGAGTTTGAGATTCACCTCAGCATCAAGAACAAGGGGAGAA TGAGCAGTGATCACACTGTGTTCTTGTTCTCTTCTCCTCCTGCAGTGCACAATGCACCTCATAAACACTTAGTGGGATTT GAGAAAGTTCACTTGGAAGGAAATACAGAAGCATTGGTTAAGTTCAAGGTGGATGTTTGTAAAGATTTGAGTGTGGTTGA TGAACTTGGCAACAGAAAAGTTGCATTAGGACAGCATTTGCTTCATGTGGGTGACTTGAAGCATGCTTTGGGTGTGATGA TTTGA 

Protein sequence (LotjaGi4g1v0033200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MLCSENRAPKCSVLLCLLTLFTTILLSCGLVWGQTTPNFACDVAKNPALSGYGFCNRSLPVNARVADLVGRLTLQEKIGN LVSGAAIVSRLGIPKYEWWSEALHGVSNIGPGTRFSNVVPRAASFPMPILTAASFNTSLFQAIGKVVSTEARAMYNVGLA GLTYWSPNINIFRDPRWGRGQETPGEDPVLASKYAAGYVKGLQQTDHGDHNKLKVAACCKHYTAYDIDNWKGVERYRFNA VVTQQDLDDTYQPPFKSCVIDGNVASVMCSYNQVNGKPTCADPDLLKGVIRGQWKLNGYIVSDCDSVEVLYNAQHYTKTP EEAAAISILSGLDLNCGSFLGKHTEDAVKQGLVHEADISYAVSNNFATLMRLGFFDGDPRKQPYGKLGPKDVCTSANQEL AREAARQGIVLLKNRPGSLPLNAKAIKSLAVIGPNANATRVMIGNYEGIPCKYISPLQGLTALVPTTYAAGCLDVHCTNP VLDDPKRIAASADATVIVVGANLAIEAESLDRVNILLPGQQQHLVTEVANAAKGPVILAIMSGGCMDVSFAKTNDKITSI LWVGYPGEAGGAAIADVIFGFHNPSGRLPMTWYPQSYVDKVPMTNMNMRPDPTTGYPGRTYRFYKGETVFSFGDGLSYST IEHKLVKAPQLVSIPLAEDHVCHSLKCKSLDVAGEHCENLEFEIHLSIKNKGRMSSDHTVFLFSSPPAVHNAPHKHLVGF EKVHLEGNTEALVKFKVDVCKDLSVVDELGNRKVALGQHLLHVGDLKHALGVMI 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SignalP_GRAM_POSITIVE 1 40 40 -
ProSiteProfiles 1 28 28 5.0
Phobius 1 12 12 -
Phobius 1 33 33 -
SignalP_EUK 1 33 33 -
PANTHER 11 773 763 0.0
PANTHER 11 773 763 0.0
Phobius 13 28 16 -
TMHMM 13 35 23 -
Phobius 29 33 5 -
Phobius 34 774 741 -
Gene3D 52 384 333 1.9E-87
SUPERFAMILY 54 408 355 2.74E-89
Pfam 121 362 242 4.7E-36
PRINTS 125 144 20 2.3E-6
PRINTS 215 231 17 2.3E-6
PRINTS 289 307 19 2.3E-6
Gene3D 395 639 245 1.1E-58
Pfam 409 638 230 6.4E-49
SUPERFAMILY 409 640 232 3.92E-45
Gene3D 665 772 108 1.8E-10
SMART 698 767 70 2.0E-12
Pfam 699 765 67 3.3E-10

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Hydrolase activity, hydrolyzing O-glycosyl compounds Catalysis of the hydrolysis of any O-glycosyl bond.
Biological process Carbohydrate metabolic process The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.

Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0033200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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