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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0033200 |
| Transcript ID | LotjaGi4g1v0033200.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Beta xylosidase; TAIR: AT5G64570.1 beta-D-xylosidase 4; Swiss-Prot: sp|A5JTQ3|XYL2_MEDSV Beta-xylosidase/alpha-L-arabinofuranosidase 2; TrEMBL-Plants: tr|A0A0R0IPH2|A0A0R0IPH2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0033200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:4043848..4049029) extracted from Lotus japonicus Gifu genome v1.2.
GTCACAATGCTCTGTTCTGAAAACAGAGCACCCAAATGCTCTGTTTTGCTCTGCCTCTTGACACTATTTACCACCATTTT GTTGAGTTGTGGCCTGGTTTGGGGTCAAACAACACCCAATTTCGCCTGCGATGTTGCGAAGAACCCGGCATTGTCGGGGT ACGGGTTCTGCAACAGGTCATTGCCGGTGAATGCGAGGGTGGCGGACCTTGTGGGGAGGTTGACATTGCAGGAGAAGATA GGGAACTTGGTGAGTGGCGCGGCTATTGTGAGCAGGCTTGGGATTCCAAAGTATGAGTGGTGGTCTGAGGCGCTTCATGG AGTGTCGAATATCGGTCCCGGGACGCGGTTTTCCAATGTGGTTCCCAGAGCAGCCAGTTTTCCTATGCCTATCCTCACTG CAGCTTCTTTCAACACTTCATTGTTTCAAGCCATTGGAAAGGTGACGATTCTATTCTCCTTCTTATCTAAAGCATGTTTT TGAAGTTTTCACACCTCTTTTATTCTGGTGATAGTTCTGAAGGGGTTCCTATAAAAAATGGGAAATGTGGTAGCTTTTCC TTGTTTGTTGAATGAAGAAAGCTATGAACTTGAGTCATTTAAGCTGACAATTCTTTCAATAAGTCTTATGATGTTTGGTT GAAATTTTATTGTGCATGTTTGAGTATTATAAGCCTTTATGGAAGGTTATTGCTACTTTTAGAATTTTCTTCTATTGCAT TCATAAAGCTTCATCATTGATTTAATCTAGTGAAAGCCAAAATAAGTGCCAAATTTTACTGGCTTTTTTTTTTATATCAA TGAGGCTGAAACTTTAGATTGTTGATTAGAAGGAGTAGTCTGCAAGCTTTTTCAATTTGGATCCTATGCAGCAGAGGTTC TCTGCAGCTCCCTCCTGCAGAATTATAGGCCATTGATTTTTGTAATCAATTCAATGGCCAGGATGAATCTTAATAAAAAT AGCATATTAAATAAAAAAGTTTATGATGATTTATGGCCTGCAGAGAATCTGAATTCAAGTTTTTTAGGTACAAATTCTTC ATTGAACTATAATAAATCAAACAAAATGCAGGTAAGTTCTTAGTGGGAATTTGCAGAAATTTGATGCATACATATTTTGG TATCTAGTGTTTCATATTGCTGCAGAATGATCAACTGTGTAAATAACCTATACTTACACTCAACACATAAAAAGTGTTTC AACTTTCAAATGGTGTTTATGGCTAATTTCTGCTCATCACAGGTAGTTTCAACAGAAGCCAGAGCAATGTACAATGTAGG TTTGGCTGGTTTGACATATTGGTCACCAAACATTAACATATTCAGGGATCCAAGATGGGGAAGAGGTCAAGAAACACCAG GGGAAGACCCTGTGCTTGCAAGCAAATATGCAGCGGGGTATGTGAAAGGTCTGCAACAGACTGATCATGGGGACCACAAC AAGCTCAAAGTTGCTGCCTGTTGCAAACACTATACAGCATATGATATAGATAACTGGAAGGGTGTTGAGCGTTACAGATT CAATGCTGTGGTAATGTAACATTAGTTGAAAAATTTAAGCATAAGTTCATGTGTTTATTTGGATTCTCTGTCGCAGAGAT TCTCTACAGCTCCCTCCTACAGAATTATGGACCATTAGTTTTTTTAATCAATGGCTAGGATCAATCTAAATAAAAATTAG TTTATTGAATTGAAGATTTCGTTGCGATTTATTGGCAGGGGCTGCAGAGAATCTGAATGTGTGTTTATGAGGATGGGAAT GTGAAAGGATCATTTTCATCATTTTTTGTTGTTTTGCTTGTTGATTTTTGTTAGGTGACACAACAAGATTTGGATGATAC ATACCAACCACCATTTAAGAGTTGTGTGATTGATGGAAATGTTGCCAGTGTGATGTGTTCCTACAACCAGGTTAATGGAA AGCCTACCTGTGCTGATCCTGACCTCCTGAAGGGTGTTATCAGAGGCCAATGGAAGTTAAATGGGTATATTTCAACCCTC ATTTAAGTTTGGAAATTTATTCGTGTACATCCGCATAGTACAACACCCAATAGTCACCTAGAGTGAAAAAGAAAGAGAAG TGAGAGAAATACTGGATGTGATATGATAAGAAAAGAGAGGTAGATAGGAAAATAGAGTGTCTATAAGGTGTTTAACTGTT AGGTTGTCTAAGTATGACTCTTAATGTTTGTCCTCCTTGTTTGAAGTTATGTTTTCTTTCACAATAACATGAATATATTG GCCTATGCAGATATATAGTTTCTGACTGTGACTCAGTAGAAGTGCTTTACAATGCTCAGCATTACACCAAGACTCCTGAA GAAGCTGCAGCCATATCCATTCTTTCAGGTAAACTAGGTGTGAAAAGACTACATAATCATAGATTCATAAGAAACTGTTT GAGTTATCAAGTGATTGTAACATTGTCAATGGCAAAAGTCTTGGATTTTGGATTGGTTGGAATTTTAGTTAAATTTATGT AAATGTTTATGACCTACCTATATGAGTTTATTTCTTAAGCTACTCAAATCAGCTTATGAATAAGTGTTTTACATATCAAT AATATATTCGTACTTTATTTCGATAAATCTTTCAAATTAGCTTACGAATATGTGCGTATGCGATGAGCGCTTATTGAAAA GTGCGTAATTAAATTGTTTACCAAACACACCCCAAATGTATTAACTTAACTTTGTTGTGGACAAATTTTGACATTGCAGG GCTGGACTTGAATTGTGGTAGTTTTCTTGGCAAACATACAGAAGATGCAGTCAAGCAAGGGCTTGTACATGAAGCAGACA TTAGCTATGCCGTCTCCAACAATTTTGCCACCTTGATGCGTCTCGGATTCTTTGACGGCGATCCGAGGAAGCAACCTTAT GGAAAACTTGGTCCGAAAGATGTCTGCACTTCAGCAAACCAGGAGCTCGCCCGTGAAGCTGCAAGACAAGGAATTGTGTT GCTTAAGAACAGACCAGGATCACTGCCTCTTAATGCCAAAGCCATTAAATCATTGGCAGTTATTGGCCCCAATGCTAATG CTACAAGGGTAATGATTGGAAACTATGAAGGTATCAACATTTCTTCCAACTCTTAATAACTTGTTTTGGCATGTTGTGAC TTAGCCATGAGGACATAGACTTGGGAGACATACTGAATTGGTGATTTATCAATTATTTCTATGTAGAAGAACCAAATTTA TTAAGGAGCAAATTCTCATTTGGAACATAAATTTGGTATTCAAAAGATTGTTACACCAATTTTTTTCTATTTACTAAGAC CAAATTGATGTTATTTAAAGGTTGGTTTTCCAAAGGTTCTAAGACTAATGTTTACTCAATCATTAACTATAGTGTAGGGA AAATGTCACAATGCTTGCTACTGCTAGAAATATAATATAGAACCACCATGTGTTAATTATCCAGCAGTTTGAACTTTGGA ATAGTTGGTTCATGACACGATATCAGATCCTCTAAAACCTAATGATCTATCCTTGTTGCCCCATTATTCTAGTAAAAAGT CGAAGTTTAGCACAAGGTAGGTGCTACGCTATCCGCCATTAACAACCCTGGTTCGTACATTTACCCAACAACTTAAGCAT TTGGGATAGTTGGTTCATGACATTTACTAGAAGTTGAAGCCATGTTATGTTGCCTTTCTACTTAACATCATATTCAACAA AGTTCTAAATTTTTTGCAGGCATTCCATGCAAGTATATTTCACCCTTACAAGGTCTAACAGCATTGGTTCCTACAACCTA TGCTGCTGGCTGTCTTGATGTGCACTGTACCAATCCAGTACTAGATGATCCCAAAAGGATTGCAGCCTCTGCTGATGCAA CTGTGATTGTGGTGGGTGCAAATCTAGCAATAGAGGCAGAGAGTCTTGATAGAGTCAACATTCTTCTTCCAGGACAGCAG CAACATCTAGTCACTGAAGTTGCAAATGCAGCAAAGGGACCTGTTATTCTTGCCATAATGTCAGGAGGATGCATGGATGT GTCTTTTGCCAAAACCAATGATAAAATCACAAGTATATTATGGGTTGGGTACCCTGGAGAAGCTGGTGGAGCTGCCATAG CTGATGTGATCTTTGGTTTCCATAATCCAAGTAGGGTTATTTGATTCTTTTCTAAGTAGTTTTCTGAATTTAAAAACTGT TTTTAGAAACATATATTAAACTTGATTTTTAAAAGAGAAAAGAAAAAAAGCTGTTTGAAAGATATGTTTTTCAATGTTGA AATACATGTGGCTTGAAAACTAAAAACAGAAAAATATATATCGTGCCTTGTTTTATTCCCTTCTCAGTTTTTGAATTTAA AGCCTAATTTCAGAAACAAATTTTACAACCTGTTTTTCATGAGAAAAGAAAAGAAAAATAGTTTGAATAAGATGTTCTGC AAAGCTGAAAGACTTATGACTTATAAACTAAAAACAAAAACTGAAAACAGCTGTGAGGTGTCTTGAGATTTTAGTTTTAA AAAATGAAAATAAAAAGTTTTAAGAACTGTTTCACAAAACAATAATCAAACAGCCACAAAATCATTTTTCCTCATAGCAT ATATTTTCTTAAGAGTTTGGAACTAAAAGATGATTTTTTTCCTGACTCAGGTGGAAGGCTTCCCATGACATGGTATCCAC AATCCTATGTAGACAAGGTACCAATGACCAACATGAACATGAGGCCTGATCCAACCACAGGCTACCCTGGCAGAACATAC AGATTTTACAAAGGGGAAACTGTTTTTTCATTTGGAGATGGATTAAGCTACTCCACTATTGAGCATAAGTTAGTTAAAGC ACCACAGTTGGTTTCTATTCCCCTAGCTGAGGATCATGTGTGCCATTCCTTAAAATGCAAGTCACTTGATGTTGCTGGTG AGCATTGTGAAAACTTGGAGTTTGAGATTCACCTCAGCATCAAGAACAAGGGGAGAATGAGCAGTGATCACACTGTGTTC TTGTTCTCTTCTCCTCCTGCAGTGCACAATGCACCTCATAAACACTTAGTGGGATTTGAGAAAGTTCACTTGGAAGGAAA TACAGAAGCATTGGTTAAGTTCAAGGTGGATGTTTGTAAAGATTTGAGTGTGGTTGATGAACTTGGCAACAGAAAAGTTG CATTAGGACAGCATTTGCTTCATGTGGGTGACTTGAAGCATGCTTTGGGTGTGATGATTTGA
CDS sequence (LotjaGi4g1v0033200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTCTGTTCTGAAAACAGAGCACCCAAATGCTCTGTTTTGCTCTGCCTCTTGACACTATTTACCACCATTTTGTTGAG TTGTGGCCTGGTTTGGGGTCAAACAACACCCAATTTCGCCTGCGATGTTGCGAAGAACCCGGCATTGTCGGGGTACGGGT TCTGCAACAGGTCATTGCCGGTGAATGCGAGGGTGGCGGACCTTGTGGGGAGGTTGACATTGCAGGAGAAGATAGGGAAC TTGGTGAGTGGCGCGGCTATTGTGAGCAGGCTTGGGATTCCAAAGTATGAGTGGTGGTCTGAGGCGCTTCATGGAGTGTC GAATATCGGTCCCGGGACGCGGTTTTCCAATGTGGTTCCCAGAGTAGTTTCAACAGAAGCCAGAGCAATGTACAATGTAG GTTTGGCTGGTTTGACATATTGGTCACCAAACATTAACATATTCAGGGATCCAAGATGGGGAAGAGGTCAAGAAACACCA GGGGAAGACCCTGTGCTTGCAAGCAAATATGCAGCGGGGTATGTGAAAGGTCTGCAACAGACTGATCATGGGGACCACAA CAAGCTCAAAGTTGCTGCCTGTTGCAAACACTATACAGCATATGATATAGATAACTGGAAGGGTGTTGAGATTAGCTATG CCGTCTCCAACAATTTTGCCACCTTGATGCGTCTCGGATTCTTTGACGGCGATCCGAGGAAGCAACCTTATGGAAAACTT GGTCCGAAAGATGTCTGCACTTCAGCAAACCAGGAGCTCGCCCGTGAAGCTGCAAGACAAGGAATTGTGTTGCTTAAGAA CAGACCAGGATCACTGCCTCTTAATGCCAAAGCCATTAAATCATTGGCAGTTATTGGCCCCAATGCTAATGCTACAAGGG TAATGATTGGAAACTATGAAGGCATTCCATGCAAGTATATTTCACCCTTACAAGGTCTAACAGCATTGGTTCCTACAACC TATGCTGCTGGCTGTCTTGATGTGCACTGTACCAATCCAGTACTAGATGATCCCAAAAGGATTGCAGCCTCTGCTGATGC AACTGTGATTGTGGTGGGTGCAAATCTAGCAATAGAGGCAGAGAGTCTTGATAGAGTCAACATTCTTCTTCCAGGACAGC AGCAACATCTAGTCACTGAAGTTGCAAATGCAGCAAAGGGACCTGTTATTCTTGCCATAATGTCAGGAGGATGCATGGAT GTGTCTTTTGCCAAAACCAATGATAAAATCACAAGTATATTATGGGTTGGGTACCCTGGAGAAAAGGTACCAATGACCAA CATGAACATGAGGCCTGATCCAACCACAGGCTACCCTGGCAGAACATACAGATTTTACAAAGGGGAAACTGTTTTTTCAT TTGGAGATGGATTAAGCTACTCCACTATTGAGCATAAGTTAGTTAAAGCACCACAGTTGGTTTCTATTCCCCTAGCTGAG GATCATGTGTGCCATTCCTTAAAATGCAAGTCACTTGATGTTGCTGGTGAGCATTGTGAAAACTTGGAGTTTGAGATTCA CCTCAGCATCAAGAACAAGGGGAGAATGAGCAGTGATCACACTGTGTTCTTGTTCTCTTCTCCTCCTGCAGTGCACAATG CACCTCATAAACACTTAGTGGGATTTGAGAAAGTTCACTTGGAAGGAAATACAGAAGCATTGGTTAAGTTCAAGGTGGAT GTTTGTAAAGATTTGAGTGTGGTTGATGAACTTGGCAACAGAAAAGTTGCATTAGGACAGCATTTGCTTCATGTGGGTGA CTTGAAGCATGCTTTGGGTGTGATGATTTGA
Protein sequence (LotjaGi4g1v0033200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLCSENRAPKCSVLLCLLTLFTTILLSCGLVWGQTTPNFACDVAKNPALSGYGFCNRSLPVNARVADLVGRLTLQEKIGN LVSGAAIVSRLGIPKYEWWSEALHGVSNIGPGTRFSNVVPRVVSTEARAMYNVGLAGLTYWSPNINIFRDPRWGRGQETP GEDPVLASKYAAGYVKGLQQTDHGDHNKLKVAACCKHYTAYDIDNWKGVEISYAVSNNFATLMRLGFFDGDPRKQPYGKL GPKDVCTSANQELAREAARQGIVLLKNRPGSLPLNAKAIKSLAVIGPNANATRVMIGNYEGIPCKYISPLQGLTALVPTT YAAGCLDVHCTNPVLDDPKRIAASADATVIVVGANLAIEAESLDRVNILLPGQQQHLVTEVANAAKGPVILAIMSGGCMD VSFAKTNDKITSILWVGYPGEKVPMTNMNMRPDPTTGYPGRTYRFYKGETVFSFGDGLSYSTIEHKLVKAPQLVSIPLAE DHVCHSLKCKSLDVAGEHCENLEFEIHLSIKNKGRMSSDHTVFLFSSPPAVHNAPHKHLVGFEKVHLEGNTEALVKFKVD VCKDLSVVDELGNRKVALGQHLLHVGDLKHALGVMI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 33 | 33 | - | – | |
| SignalP_EUK | 1 | 33 | 33 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 40 | 40 | - | – | |
| Phobius | 1 | 12 | 12 | - | – | |
| ProSiteProfiles | 1 | 28 | 28 | 5.0 | – | |
| PANTHER | 11 | 120 | 110 | 0.0 | – | |
| PANTHER | 11 | 120 | 110 | 0.0 | – | |
| TMHMM | 13 | 35 | 23 | - | – | |
| Phobius | 13 | 28 | 16 | - | – | |
| Phobius | 29 | 33 | 5 | - | – | |
| Phobius | 34 | 596 | 563 | - | – | |
| Gene3D | 51 | 227 | 177 | 1.9E-32 | ||
| SUPERFAMILY | 54 | 206 | 153 | 5.9E-33 | ||
| PANTHER | 120 | 210 | 91 | 0.0 | – | |
| PANTHER | 120 | 210 | 91 | 0.0 | – | |
| Pfam | 127 | 207 | 81 | 4.4E-12 | ||
| PANTHER | 211 | 421 | 211 | 0.0 | – | |
| PANTHER | 211 | 421 | 211 | 0.0 | – | |
| Gene3D | 249 | 424 | 176 | 4.4E-36 | ||
| Pfam | 262 | 422 | 161 | 1.3E-29 | ||
| SUPERFAMILY | 262 | 462 | 201 | 1.1E-30 | ||
| PANTHER | 421 | 595 | 175 | 0.0 | – | |
| PANTHER | 421 | 595 | 175 | 0.0 | – | |
| Gene3D | 487 | 594 | 108 | 1.3E-10 | ||
| SMART | 520 | 589 | 70 | 2.0E-12 | ||
| Pfam | 521 | 587 | 67 | 2.3E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Hydrolase activity, hydrolyzing O-glycosyl compounds | Catalysis of the hydrolysis of any O-glycosyl bond. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi4g1v0033200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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