Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi4g1v0043300.8

Overview

Field Value
Gene ID LotjaGi4g1v0043300
Transcript ID LotjaGi4g1v0043300.8
Related isoforms 7
Lotus japonicus genome version Gifu v1.2
Description Squalene monooxygenase; TAIR: AT1G58440.1 FAD/NAD(P)-binding oxidoreductase family protein; Swiss-Prot: sp|O48651|ERG1_PANGI Squalene monooxygenase; TrEMBL-Plants: tr|A0A075DZG2|A0A075DZG2_ASTME Squalene epoxidase; Found in the gene: LotjaGi4g1v0043300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:5135530..5142722) extracted from Lotus japonicus Gifu genome v1.2.

GATAAGGCAAAATACAAAATCCTTAAGAAGGACAATCCAACAAAAGCAACCCTCCCTAACAAAAAGCAGAGGACCAAAAA GAAAAAAACCAAAAGCTCCCCAAGAAAACAAGCTAGACAAACAGAAACCCTAGTCTCACAAAACAATACCTAAGAGAGCC AAAAACTGGCCAACCGACCACCAACTATCAAAAACAACCCCTATACATCCTCTGCAAACCATGAATCCTAGGAAGACTTG AGCGCTAAAATCTGGGCCGTTATTTGAATCAAAAGGGCACTCCTTGTCCTCGTCAAAACACCATGAGGCTCTGATAACTC TACCGGTAACAAAATCAATTGATTCTGAACAGTGGCCTTCAATTCTGGTACTTCTTTTGTGGATATTGGTCTTTTATTAC TGTAATTGTTTCTACAAATGTTAACAATTCTAACACAATTTCTTTTCGGATACATCATCTCAACAACTTTTAATTTAATT GATTATTTGATCACCTTAGAGAAAAATTATTTGGCATGCTCACTTTCTTTCTGTTAGAATATCAAATTCATTCCACATGC AAGGACTACAACTTGATAGCAACTACCTTTGTTGATTTTTGAAATCCAGTTTTCAATGTTTCACATGCAGTTTGGGCTTT TTCCTCACATTCTCCTTCTATTCCTCCTTTTGCAACTACATTAAAGACATCAAAATCTAAAAAAATATGCTATGCATGAA TCTACTAAGAGAAATAAATAAATGATCTTAAAATGGTAGCTAAATCATGACTTTTCATATTATAGATTAACCATCATTAA ACAACATTTGCAGGTTGAAGTGTCCTCTCATTTTGTTGCACTAGTCTTGGAGAACTGTAATCTTCCATATGCAAATCATG GACACGTTATCTTTGGTGATCCTTCAACAATTTTAATTTATCCCATTAGTAGCACTGAGGTTCGCTGTTTTGTTGAATTT CATGGCCAAAAGTTACCTTCCATTGGTAATGGTAAAATGGCCCTTTATATGAAAACTGTGGTAGCTTCCCAGGTAACAAT AAGATTTTTTCCATTCCTTCATTTTTATTACAAGTGTGTTTGGATATTGGTTAAGTTAAAATGACATTACATTCATCTCA ATCAACCAATTGAGTTTTGCTAACTTTTTACCTAAAAGTAGGACAAGGGGTATCCGAGCATACCCTAAGTTTTACAATTA ATGGAAAATTATATATACAAATTTAAGCAAGATTTCAAAGGTACCATTTCATATTTTCTTTTGTTAATTCTGGAATTGTA TCTTTCAGGTTCCTCCTGAGCTGCATACTTTTTTTGTAGCAGCAGTTGATAAAGGAAACATGAGAACCATGCCAACTAAA TGCATGCCTGCCTCACCTCATCCCACGCCCGGTGCCCTTCTCATCGGAGACGCACTCAATATGCGTCACTCATTAACCGG AAGTGGAATGACTGTGGCTTTGGCTGATATTGTTCTCTTAAGGAATCTACTTAGACCTCTGCATGATCTGCACAATGCTT CTGCTATTTGCAAATATCTTGAATCATTCTACACTCTCCGCAAGGCAAGTAAGATAGAAACATAACTAGTATTTAAGCCT ATACTATACTATGCACGGGAAAATGTTTTTAAAAATATTTAAATTTAAATTTGAGATATTTTCAACTTTTAGGGTGAAGG ATTGTGTTAGAATATAATATAAAATCATTAAGGTGACCCTTACCCAACAACTTAAGTTTTTGGGAAAATTGGTTGCTTGA CATGGTACTCGAGCCTCTATGACTTAGCGGTCTAGAGTTCAATCATTGCTCCTTGGTTGTTTGACAGATTGGTTGATAGT AACCTCAATGTTTAACCAAATTAGAGGAAACAAAAAGAGAAAACTTAGTGCAGTGCCTGATTCTATTTGCAGCCTATGGC ATCTACGATAAACACAATAGCTACAGCATTTCCCAAAGTGTTTGGTGTATCTCCTGACCCTGCTATGAAGGAATTGCAAC AATCATTTCTTGATTATTTGAGCCTTGGAAGAGTTTTCACAGAGGGACTAGCATCTCTCCTCGCTGGTCTAAATCCTCGT CCATTGAGCATGGTTCTCCATTTCTTCGCGGTGGCTATGTATGGCGTTGGCCGACTTCTGATACCATTTCCTTCTCCGAA ACGGATATGGATTGGAGCAAGGATGATTTCAGTGAGTGATTCTGAAGTCCTATTTCGGTTAAACATATAGAATATCTCAG CCATCACTTGCAATCAATTTCTATCACATTCTCATCAAATACAAGTTGGTAACTATTTGTTAATGCTGCAAAAGAGTTTG ATTTGAATCAATTTTTTTCTTGATATTCCAGGGTGCATCAGGTGTCCTTTTCACCACTATCAAGGCTGAAGGAGTAAGAC AAATGTTCTTCCCAGCAATGGTGCCAGCATATTATAGAGTCCCTCCTGTCTATTAAGCATATTACAAGAAAGGCATGGAA CATGTACAAACAGTTCCCACATTCTTTGTACTTGTAGTGTTCCATTATTTGGGAAAAAAATAGAATAAGATAGCAGACTC CTTACTATGATTCGGCAAAATAATTTTTACAAATGTAAAATTTGAAGAGGAAAACATTTTTGAAATGTATCAGCCTATGA GCTGCCCTATGTTTTCTTTTACACATTGCTGCATTCAACATTCATTGCAAGTTTGATTCATTCACACCCATTTTTATTTG TATTGTTTGGGTCAGGTCCATTGGAGTCTCATCCCCGTTCCGTCTTATTTCATCACAATTTCTTTGCTTCTTGATGTCTC ACTCTCTTCATATTTTTTCATAAGCCAAATTGAATTAAAAGATAGCACAAGAAGAGCTATAACCCAATTACAAATATAGA AAAATAGAGAAAAGTAAAAGAGGTAGCAAGATTCAGAGTGCTCCCACAAAGATTGCAAAAGCAGGGGAGGGAATAGGCTA AACGCCTTCAAATACAACAGATCCCCCAAGTAAATACATAAGATGCCCACCATATGACCAAGTAGCAACTACCCCCAGAT AGCAAACCACTTGAAATCCAAATCAATTAGCATCCCTTGAAATCTCTCTTCTTTATATCATATTATCACTTATTATATCT CTTACTTCTCTCAATTCTCTTAAAGTGAAGCTGATCAATTTAGGACATGAATTGGTAATGTTTCACACTCATGGTGATTT GCAATCGTCTCCACAAGGACAATGGGTTCAATTATCAAAGAGTGGACTCGACTCTTTGATTTTCTATCTGGGGCTCCATG CCCATCTCCATATTGGTATGTGCATTCAGAAATTCTAGCAAGGTTGATAGCTGTGTCTACAAATGGTTTTGGGAAAGGTG AATGAGTGACTCGATCTTTACTCATCTTCTTCCATGTCTCATCAAGCAAATTACGGATGTGTTTAGTAGCATCATCTTCA TTCACACCACTTTCACGCATGTAGCACATAACCGAATTTGCTATTTCACCCCTCAGTAACTCGGCCTACAAAATTATGAG ACACATATTGAGAAATCTCACATTAACTAGAGATATATCAAGTCAACTCTTATATATAGGAAGACAATTCTCACTCTTAC CGTAGAAGTACCCAAATCATTACAAAGTCGAAAAATAATGGATGGTCTGCGCAATAGGGCATGGTAATTGTCCAAGGCGT CAAGTGCCTCCCTTGTTATGTTGTGATTCAGCAAGAAATAAGTGTGCGTCAATATAACTACACCTGACACCGACACCCAT GCATTGTTGAGGTAGTCATCCAAGTTTGGCAACTGTTTGTCCCGGCACCACTTAGCTTCTTGTAGGAATGCTTTCAACAT AACTGACCACTGTAATTGTATTGAAAACCAAATAGTAAAACACTTAGTTTAGAGTTAACACTAACTAGTTATAGTAATTA ATGACGATAATAATGAACCTCATGTTTGGAACATGCATTCATCATTTAAACCCAATTTGTGCATACCGCGTTAGTGAGGT AGGGTAGGATATCCTGCCCTTGTTCTTTTAGTACATTATAAGCCAATTCGTTGACAACATTGTAGAGGGCTAAGAAGGAT ATCTTCATGTACTCTGGCAACACTTGGACTGCTTTAATATCCCAACTGGAAGAAATACATTTTTGGAAATATAATAATGA TTAACAGTTTCAGGAACAGTATTTTGTTAATCAATAATTAGTCCGTTTGTCATTGTTAAAAAAAGTTATTTGACTTTTAA AAAATAATTGATTTTATTTTAAGTGATTTTTTTAAAGCAAAAATTTATTTATATTTGTGCATAAATATGATAAGTGATTT TCAAATGGTTTGGATACAAAACTGTAAAAGTGCTTTTTTAAATAATTATTTAAGAATAACAACTATAATTGATATTATTT GAAAAGCTACACAAAATAGGTTGAAAAATAATCAGTTTTTTTTTTAAATTATTTATTTTTTTCAAAAAAGCAATCACAAG CACCAAAAAAATATGCATATATAAGTGATTATTAAAAAAAAATAAGTAATTACTTAAGAAAAAGCAATCACAAACAGAAA TATGATTGTTGAGTGAGGGTCGGCCCAGGGTAAAGCCACCCAAGCAGGAGCTTTAGGCCTCTCAAAAAAAAATTATTAAG GAAAAAATGCCTCAAAATATTTTTTTACTAAGTAAAAGAGGCCACAAAAAAATCAAAGACCTCACTTTAAAGTTGGCTTT AGGCCTCATTTAGTGTTGGGCCGACCCTAAGTCTCTATATGTATTAACAATGTTGTGAAAAGCTAGATTCTGTGTAGAAT CGGAGAGGGTGTTCAAAATCGTACAATCGTAAATTGAATCGTAAGATTCTACCATAAATAGAAAAACAAAAAAATAACAT AGATATCTTGTAAGTCACATCATTTAACAAAAATTGGAATAAAAGTTCATCAGAGATTAACATGCTATAGATTTTGCTAA CATTGTATTTCAAGCATGTAAAGAACAAGGAAATTACCTTTCTACGGCTGCTGTGAAGAGTTCTAATTCATCCAAAGTGC CATACACATCATAAATGTCATCAATTGTAGTTATTAGTGAAGTTACTTTGGTTAAACCTTTGCGGATATCACTATACTGA GTCTCAAAAGTCATTCCAACCGTCCAAAAGAAGCACTCCATTAACCTGTCGCGAGTGAAGCTTAACTTTGGGGCTAGTCC CATTCCCTTCCACCACCTTCATTAACAAGTAACAATGAAATTGAAACCAAGTTGTTACAAATTAGGAAAGTATTGATGAT GAAATCATATATAGTAATGATATATACTTTTTAATTGTGTCCCAACTTGAAGTCTAAAACAACCACTTCTTAATTTAATT AATAAAAAGTAAGAGTAATGATAAGTAAGTTCTTAACTAGACATATAACAGACATACACTTCAGTACTGGTTTTCAATCG CTCTAAACATTAGTTGTGGTTAAAAATCGCATAAAACTGTATGTCGATGGTTAATTAGTGAAATGCGTATATCCACACAT AATTTCTGATATGTATATTTCCTAGCTAAGCTTACCTTGACATTTCTTGGAGATCCTTTAGCAATGTTGATTGGACAATG TTAAAATCCAGTTTGGCTGCTTCAAGCAAAACCTTATTTGCATTTTTTCTTTTTGCATATGAATCAATATACCACCGCGC TTCAAGCCTTTGGACTCTACGATGTAGTGGAAGCTCCAAAGCATGATTCACTTGTTCTAAGAGATAATTGCTACTATCAT CACTCATGGCGCTCTTGAGGTGCAAAATAGTGAAGGTCTTTGCCTCATCTAATATTTGTTCTCCTTCATAAGAGAGAAAT GATGCCTCATAGAGACTCAACATTCCTTTTACATCCTTACCAATTAGGTTCGCCTCAAAATTACCATCAAGGTTCATGAA GCTCATAAAAATATCTACACGATTGCAAAGACATAGATGAATTAAAAAAGTCAATTCAATACTTCTTGAGCATGATGAGC TTGATAATTTTTTAATATATCATTATTATATGTGTGGGGTTGTCAACGAAAAGTCATAAAAATCAAATGGACTCTAGAGT ACTTATAAATTGTAAATCATTGTACATTGTGTTTAATTTTATCATTTTCTTGAGATATATAAATGAAAAGATAAAAAAAA GTAAACTAGTAAATATATAGCTATAGACCGGTGAGGTTAATTAGATGAAGATACAATTGATAAAGTAAGCAATATTGCAA CACAATTAACATATTGAAGTTGGATAACATAGTGGCAAAAATAGTTAATAGTTATATACATATTTGTTTTATGTCAAAGT TTTTTCCAAAACGTTTGGAAGCCATGATCAAAGAGAACTAATTGTCTTCACCTCTTGTAAAAAAAATAATCTAATTGAAT TTCTTTACTAAAATATATATGTATTATATAAGCTTCAATAAATATTTTTTAATCCGTATCCAGACGAGTAATCCAATTTC TAGGATAATGTTATATATATATTATTTATATATATATATGTGTGTAAATACCTGCGGAGGCATGGTAGCCATACTCCCTG AGAAGCCTAAAGCTTAAAGCCGTCTCATGTAGACTTGTGTGATTAATTGTACCACTATGCTCTCTTTTGAAATGTAGAAA CCTATCAAGTGCTTCTCTTATCTCCTTCTCAAAATGGTAACCGAGGCCCAAGCGTCTCACATCATCGACAAGCTCTAATG TGGTCCATATCTCTGTTTTTTCATCCTTAATCATTCTCCTCACTTCCTCTCTCAGCTTCCTTGCCCTTTCCCCATATCTT ACATCCTATAAATAAATATAAAGATTATTATATATACAAATAGCAGATATCACGTGTGAGTATACATGCATAAGGAATTA AAAATCACTATATACATATATTTATAACACAATGTAAGATGATTAAATTAATCACCGCATAGTCATGTTTCAAGGACTGC AAGAAATCATAATCCCAGAGATTAGGTTCATAATGAGCTGATTTTCTTTGAGAATTAGCATCTGAAGTAGTTGCCATGCA TCGAATAGGGGAAACAGTAATTCCCTGCCAACTTTTCTTTAGATACGCCCATGCTCGTGGCTTCTGAGGATTATTGGCAA AACTAGAAACTGAATTAATGAAGGATGAATTAAGCAATGTGGAACTAGCTTGGGCCATTGATACTTGCGGTTT
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0043300.8) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCCCTTTATATGAAAACTGTGGTAGCTTCCCAGGTTCCTCCTGAGCTGCATACTTTTTTTGTAGCAGCAGTTGATAA AGGAAACATGAGAACCATGCCAACTAAATGCATGCCTGCCTCACCTCATCCCACGCCCGGTGCCCTTCTCATCGGAGACG CACTCAATATGCGTCACTCATTAACCGGAAGTGGAATGACTGTGGCTTTGGCTGATATTGTTCTCTTAAGGAATCTACTT AGACCTCTGCATGATCTGCACAATGCTTCTGCTATTTGCAAATATCTTGAATCATTCTACACTCTCCGCAAGCCTATGGC ATCTACGATAAACACAATAGCTACAGCATTTCCCAAAGTGTTTGGTGTATCTCCTGACCCTGCTATGAAGGAATTGCAAC AATCATTTCTTGATTATTTGAGCCTTGGAAGAGTTTTCACAGAGGGACTAGCATCTCTCCTCGCTGGTCTAAATCCTCGT CCATTGAGCATGGTTCTCCATTTCTTCGCGGTGGCTATGTATGGCGTTGGCCGACTTCTGATACCATTTCCTTCTCCGAA ACGGATATGGATTGGAGCAAGGATGATTTCAGGTGCATCAGGTGTCCTTTTCACCACTATCAAGGCTGAAGGAGTAAGAC AAATGTTCTTCCCAGCAATGGTGCCAGCATATTATAGAGTCCCTCCTGTCTATTAA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0043300.8) extracted from Lotus japonicus Gifu v1.2 Proteins.

MALYMKTVVASQVPPELHTFFVAAVDKGNMRTMPTKCMPASPHPTPGALLIGDALNMRHSLTGSGMTVALADIVLLRNLL RPLHDLHNASAICKYLESFYTLRKPMASTINTIATAFPKVFGVSPDPAMKELQQSFLDYLSLGRVFTEGLASLLAGLNPR PLSMVLHFFAVAMYGVGRLLIPFPSPKRIWIGARMISGASGVLFTTIKAEGVRQMFFPAMVPAYYRVPPVY
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10835
1 229 229 9.9E-121
IPR040125
Phobius
CYTOPLASMIC_DOMAIN
1 163 163 - –
PANTHER
PTHR10835:SF10
1 229 229 9.9E-121 –
Pfam
PF08491
1 190 190 2.0E-63
IPR013698
Gene3D
G3DSA:3.50.50.60
7 123 117 1.8E-7
IPR036188
SUPERFAMILY
SSF51905
32 137 106 2.85E-10
IPR036188
Phobius
TRANSMEMBRANE
164 183 20 - –
Phobius
NON_CYTOPLASMIC_DOMAIN
184 188 5 - –
Phobius
TRANSMEMBRANE
189 207 19 - –
Phobius
CYTOPLASMIC_DOMAIN
208 231 24 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004506
Molecular function Squalene monooxygenase activity Catalysis of the reaction: H(+) + NADPH + O(2) + squalene = (S)-2,3-epoxysqualene + H(2)O + NADP(+).
Subterm of
GO:0016021
Cellular component Integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
Subterm of
GO:0016126
Biological process Sterol biosynthetic process The chemical reactions and pathways resulting in the formation of sterols, steroids with one or more hydroxyl groups and a hydrocarbon side-chain in the molecule.
Subterm of
GO:0050660
Molecular function Flavin adenine dinucleotide binding Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2.
Subterm of
GO:0055114
Biological process Oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0043300.8, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…