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LotjaGi4g1v0055700.1

Overview

Field Value
Gene ID LotjaGi4g1v0055700
Transcript ID LotjaGi4g1v0055700.1
Lotus japonicus genome version Gifu v1.2
Description E3 ubiquitin-protein ligase; TAIR: AT4G03510.1 RING membrane-anchor 1; Swiss-Prot: sp|Q6R567|RMA1_CAPAN E3 ubiquitin-protein ligase RMA1H1; TrEMBL-Plants: tr|A0A0S3QZJ1|A0A0S3QZJ1_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0055700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:6706543..6708325) extracted from Lotus japonicus Gifu genome v1.2.

CTTTAGTCGAACTAAGAGGATATTTGTTTACCAAAAATCCGTGTAAACAGAATGATGTTCATTTTTCACCCTAAGTATGT ATATATATATATATATATATATATATATATATATATGATATTTTTTCTTGATTAATTTTGAAGAGGTTTCGTATACGAAA TATAGACAGGGATTGTTGATTAATGCAATGGATAACAACAATTGTGACAGATCTCATCATTTACCATTTGTAGTACTACT AAATAATTGAAGTGATATATACAATACATACACTCCTCCCTCTTCTCTATTCATGTTTGATTTGACACCTTTGGTTTTAT ACTTTAATCCCAATTCTTCATTACTTATCTTTTTTATTGCATAGATTGGTGATTGGTCTCTTGCAAAAGTAGCCAAATCT GCAAGAGGGGTTTCTTTAATTCATGGCCTTTGAGCACTATCTTACCCAGGAATGGGAAGGATCAGAGACAGAGACAGTAA GTTGTGATGGTGGTTTTGATTGCAATATCTGCTTGGAGTTTGCACATGAACCAGTGGTGACTCTATGTGGTCACCTTTAC TGCTGGCCCTGCATCTACAAGTGGCTCTATGTGCAAAGTGCTTCTCTTGCACCTGATGAGCCACCACAATGCCCTGTTTG CAAGGATGGCATATCACACACAACAATGGTTCCTCTCTATGGTCGTGGCCCAAGTGACTCTAATTTGAAGGTACAACATA AAGATGTTTTGATACCACCAAGACCAACTTGTTCTGGTGCTAAATCTCTCTTTGCAGCATCTTCTCAAAGTAGTGGCCAG CAGCTTCCATATCGCAATCCTTATCAGAATCAAGATTTCAATCAAGAAGAGGAGCATGATGATGAGACATCTCAACAAAT GGTCACTAATCTTGGTGGTGCTACCATGGCAACAGGATTCCCCCACCTTGTGTTTGGGATGTTTGGGGTGGGAAGCTCAG CAAATTCATACAACAACCCAAATTCACCTCCCAGGTTTAGAAGGCTAGAGATGCAGGCTGACAAATCATTGAACAGAATT TCAATTTTTCTCCTTTGCTGCTTTCTTCTATGTCTCATTGTGTTCTGAGCAAGCAATTGGGGCTATTTTCTGTTTCCCTG TTGTATAATTTGTCAAGAGGCATGGGTGTTAGCATAAGAATGGAATAGGTTAGTGTTTTTTCTTTTCTTTTCCAATTTTT GTATGTTAGATTAAGTGTATGTTTCAAAACTCTGAAGTTTTCCACATGGATATCAGAAGCAGTATTGCCAAATCAAAAAG TAAACAATCTTTTAGCAACAGCAGTAGATCATCAAATAAATCTATCATTTCTCTATAATTTTCAATGTCATCAAAATACA AATTTTGAACATTTTGTTATTGATTTTTGAAATTTAGATTAAATAAAGGTAAGCAATCATTTTATCAGTTTTTAAAATTA CAAACAATATGGTTGTTCAAATCTAGCATAAAAGGTGGGAGGCAAATAAAACATTTTCCTTATAAATCCTCAATGGATAA GAGTCTACAAGCAATGAGCTGTCCAGTGTCCACCCGTGACCAACCACCACATTGCAGTAACATGGAGAACTATAATTTTC TCACTTTTTGGTTTGGGGGAAATATCTATCAAGCTTTGAAACAGCTTTATGAAGCTTCTTTGAAACGGAACCACAAGACA AGGATTATGAGAACAGTCCAAAGTTGGTTTACGGTTTGTCTAGCAGTTATGAGTTGTGGATATACATCCATTGACAAAAA TAATATAGGTATACATCACAAAC
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0055700.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCCTTTGAGCACTATCTTACCCAGGAATGGGAAGGATCAGAGACAGAGACAGTAAGTTGTGATGGTGGTTTTGATTG CAATATCTGCTTGGAGTTTGCACATGAACCAGTGGTGACTCTATGTGGTCACCTTTACTGCTGGCCCTGCATCTACAAGT GGCTCTATGTGCAAAGTGCTTCTCTTGCACCTGATGAGCCACCACAATGCCCTGTTTGCAAGGATGGCATATCACACACA ACAATGGTTCCTCTCTATGGTCGTGGCCCAAGTGACTCTAATTTGAAGGTACAACATAAAGATGTTTTGATACCACCAAG ACCAACTTGTTCTGGTGCTAAATCTCTCTTTGCAGCATCTTCTCAAAGTAGTGGCCAGCAGCTTCCATATCGCAATCCTT ATCAGAATCAAGATTTCAATCAAGAAGAGGAGCATGATGATGAGACATCTCAACAAATGGTCACTAATCTTGGTGGTGCT ACCATGGCAACAGGATTCCCCCACCTTGTGTTTGGGATGTTTGGGGTGGGAAGCTCAGCAAATTCATACAACAACCCAAA TTCACCTCCCAGGTTTAGAAGGCTAGAGATGCAGGCTGACAAATCATTGAACAGAATTTCAATTTTTCTCCTTTGCTGCT TTCTTCTATGTCTCATTGTGTTCTGA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0055700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAFEHYLTQEWEGSETETVSCDGGFDCNICLEFAHEPVVTLCGHLYCWPCIYKWLYVQSASLAPDEPPQCPVCKDGISHT TMVPLYGRGPSDSNLKVQHKDVLIPPRPTCSGAKSLFAASSQSSGQQLPYRNPYQNQDFNQEEEHDDETSQQMVTNLGGA TMATGFPHLVFGMFGVGSSANSYNNPNSPPRFRRLEMQADKSLNRISIFLLCCFLLCLIVF
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
NON_CYTOPLASMIC_DOMAIN
1 201 201 - –
PANTHER
PTHR12313
2 214 213 1.8E-79 –
PANTHER
PTHR12313:SF6
2 214 213 1.8E-79 –
Gene3D
G3DSA:3.30.40.10
8 87 80 8.9E-16
IPR013083
SUPERFAMILY
SSF57850
24 86 63 2.36E-15 –
CDD
cd16745
25 74 50 4.2283E-25 –
Pfam
PF00097
27 73 47 3.0E-8
IPR018957
SMART
SM00184
27 73 47 3.2E-9
IPR001841
ProSiteProfiles
PS50089
27 74 48 12.416
IPR001841
ProSitePatterns
PS00518
42 51 10 -
IPR017907
Phobius
TRANSMEMBRANE
202 220 19 - –
TMHMM
TMhelix
203 220 18 - –
Phobius
CYTOPLASMIC_DOMAIN
221 221 1 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0046872
Molecular function Metal ion binding Interacting selectively and non-covalently with any metal ion.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0055700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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