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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0071000 |
| Transcript ID | LotjaGi4g1v0071000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | La; TAIR: AT3G19090.1 RNA-binding protein; Swiss-Prot: sp|Q9LHL3|LRP6C_ARATH La-related protein 6C; TrEMBL-Plants: tr|G7JMI2|G7JMI2_MEDTR LA-related protein 6 LA RNA-binding domain protein; Found in the gene: LotjaGi4g1v0071000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:9000885..9004624) extracted from Lotus japonicus Gifu genome v1.2.
TTATTATCCTAGTATTAGATTAGAGGAATGAGCACGGTTTAAGGAGAGTATTTGTGAAATGAGAGAAGAATAGAAACCTC AAAAAAGATTTAGTCAAAAAGCCCACAAGTGGCGGTTGTGTGTGTAAGAAAGAGATTCAATATCCTAAAGAAAGTGGTTA TTATTAAGCTTCAGGTAACAGAATAGAGAGAGAGAGAGAAAAAAAACACTACTACGTTACACATCACAATATCACATGCA AATAGAAACGAAAAGAGAAAGAGTTAGTTTTCAAAGAGAAGCATAAGTGAATGAAAATGGCACAAGCGCAACCAGAAGAG AAGATCCATGAGAAATCAGAGAAGGAAATTCAAGAAACGAGACATTCTAGCTTCAAATTCAATGCCCAGGCTCCTGAATT TGTTCCGAGATCGCATTCGCAGATGCCAATTTCGGGTTATTTCTACCCTTGTTTCCAGATTCTCGGTGCCTCTGGTGAAT CTGATTGGTTTTACGTTGGGGACCAGGATTCTGCTTGTTTGATCCCCACCACCGCCAATGTTGCACTTCCTAATTGCTCC AAGAATGTACTCACCCCTGATCTCCAGCAAAAGATTGTCAAACAGGTACTGTGCCTTTTTCTTGAGCAATCTTCGATGAT CTTTGATTGATTCTTTTGGATTTTGTTGAATTTATTAGGTAATTGGAATTGAGTTTAAATTCTATGCACCCACGACCCAC GATGTAATTTTTTTTTACACCGTCAACCAATCAGATTTTAAGGATGTGAGAAAATCTCTCTATTTATCTAATTTCATTAA TTGACGTGACACATCCTTGAAATCTGATTGGTTGACGGTGTAAAAAAACTTTACACCGTCAGTGCATCATCCTTTTTCTC ATTGGGATTTAACCTAATGTTATGAGGTGATTGTTGTTTTTCTATTTAATGTTTTTTCATAATGAGAAGTGGAGTTGCAT TGTGATTTTGATGTTTGATTAATCCCACTGATTGAAATGGATTGATGTTCGTATATTTGATGAAAAGATTTATTTAGTTT AATTCTTTGATAAGTAAATCAATTTTGGAGGTTTTACCCTAATGTTATAAGGTGATTGTAACTTGTAATTGAAGTTACAT TGTAATTTTTTAATTTGTGAGAAAATGAGATTTTGATTAATGGATTGATCAAGACTCAAGAGGTTTATGTAGTTCAATTC TTTAATAAGGAAATAGGTAATAGTGGTTTTTCTATGAAATTTTTTTCCTTATTGTGGCTTGTGAGAATTGCTCGTCAAAT TGAAAGATGTGATGGTGGGTGTAATAGGTGGAGTATCAGTTTAGTGACATGAGCTTGCTAGCAAATGAATCTTTCCAGAA ACAGATGCATAAGGATCCTGAAGGTTATGGTAAGGATCTTGGAATGCTTTCTACTACAACTTAGATTTTCTTTTTAGGGT CCCCTTTTGTGGCTCCTATGATTGGAATAATTTCTTTGATGGAATGTTGGCTTTGCAACAGTTCCAATAACTGTGATTGC TTCCACAAAAAAAGTCAAGTCTCTTATTAGTAACATTCATCTGCTCACCCAAGCTCTTCGTAATTCTTCAAAACTTGTAA GTATTTTGGATGGAATAAGGCATTGTTTTGGTCTTATTTTAATTCTCTTTCTGACAATGCAATTTTTTTGTAGGTTTTGA GTGTTGATAGTAAAAAGGTTAAACGCAAACATCCTTTCACTGATAAGGAGAAAGAGGATTTGCAGGTAAAGAAATTTAGG AGATTTTTCAGGACCATGCCAAAATTTCTTCTGATTGTAGCATAATACAAAGTGCTTTTCTTTTCTCTTGCAGTCTCGTA CTGTTGTAGCAGAGAATTTACCTGACGATCATTCCCATCAAAATCTTCAGAAAATATTTTCTGTAGTTGGGAGGTCAATT TCTTCTTTCCTTCCTTTTTTCATCATATGAACTTGATATTCTTGTGGTTTCTTATGTCTTTAAAACGTTGGTAATTGATG CCTGACTTGTGAACAGCGTGAAAACAATCAGAATATGCCATCCACAGGAACCTAACTCTTCTCGCCCAAAATGCGAATTC TTAATCAGTAACAAGGTATAAAAAACTCCAAACCATATTACTATGTTGTCTTGGTATTTTAGGAAGGCAAATGATACTTA CTAGGATTTCTTAACATTTTGCTTACTTCTCTAAAGCTCCATGCACTAGTGGAATATGAGACACAAGATATAGCTGAGAA AGCTGTAAGTAAATTCTCCAATATATTTTGCTTTAAAATTCACATGATTCAACCATTACATTAGTAACTGTAAAAAGTTT TCTTACTTGATTAGGTTGAGAAGTTGAATGATGAAAGGAATTGGAGGAAAGGGATGCGAGTGAGACTGCTGCTTAGATGC TCAGTATGTACATTTTGTACCTGATTTCAATGTTATTGTGTGTCTATTATATATCTTGAATTTCATATGCTTCTTATTCA TTTATTTTTACATGTAAACTTTTCAGCCAAAATCTGTTTTGAAGAGTAGAAAGTCAGATTTTGATGGTTATTTAGATGAT GAAGAGATTCTAAATTCTGAAGCTACTGAAGATTCTTCCCATCCAAACAACACTGAATTATCTGATAATGTAAGTCCAAT TGTATATATAGGTAGTCAAATCGGATGCATGGATGTGTTGGTCATTTCATTCAACTCTACGGTAGTGTTTGGTAGACATG TTAGGCTTAGATGAAACATATGGTTTTTATTCTTATTCAATACATTTTAAAAGTAACACAATGCAAAAGTAAGAACTTGT ACAGTTTGGTTGCATTTAAAATATGGAATTAAGAAGAATAAATTAGAATAGAACTATTCATTATGTTTCTATTCACATAT CAACCTCTAATTTTTAGAAAGATAGCCAAATTGGATATAAATTGATGGCATTCTCTTACAATTTATATAAGTAAGAATAT GTACGAAAGGAAGTTGTGCAAACCAAATTTTATGGAAACACAGACTCTTGTATGATGAGTCTTCCTTACATTATCTTTTA GAAAAGGATTACATTGTTATCTTTTCATTTAACATGACAAGTCTTGAACTGAGGCTATTGTGTTGTATTTCATTACTCCC AAGGTTGATGAAAATTCAGCAGGATCTAAGAAAGGATGGGCTAGAGGGCATGGAAAAGGAAGAGGACGCACTCAAAACCA CACTGGACGTGGCCTTCTCGCCCCACCATCACAAACAAGCAACCATGTCCCCTGTGAAGTATCCACCATCAAAATCACAA AGGGACCAAGAATGCCAGATGGTACACGAGGTTTCGCCATGGGAAGGGGCAAGCAAATGAGTCCTCCTACTCAACCCAGT TCACCTCAAGAGTAATGAGCACTCTTGAAATTTTCCCTTATGCTCCTGAATTTTAGGAAATTTCAGTGTATTTCTCATCA CCGTACTCCAGAGCAGCAAAATGGTTTAAAAGTCCTATTGTGTGGGCTTGTAGGGTAATTCTAATCTTTAGATGTTTTAC AAATTTTGTAATAAAGTCAAAATGTATAGTGTTATATGGTACGACGGATTCTGATGACAACGACCACATAGATTTTAATG CAATGCTGTCTTAGCTTGCAATTTATTGAGTAGATCATTTTAATGTTTGAAATCACTACATACTATTCTTGTACACCAAG ATGTTTTGAGTTTGATCAAGTATTAGGAAATAATGAAATATATTTTCAAGGTTTGACTTA
CDS sequence (LotjaGi4g1v0071000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAAATGGCACAAGCGCAACCAGAAGAGAAGATCCATGAGAAATCAGAGAAGGAAATTCAAGAAACGAGACATTCTAG CTTCAAATTCAATGCCCAGGCTCCTGAATTTGTTCCGAGATCGCATTCGCAGATGCCAATTTCGGGTTATTTCTACCCTT GTTTCCAGATTCTCGGTGCCTCTGGTGAATCTGATTGGTTTTACGTTGGGGACCAGGATTCTGCTTGTTTGATCCCCACC ACCGCCAATGTTGCACTTCCTAATTGCTCCAAGAATGTACTCACCCCTGATCTCCAGCAAAAGATTGTCAAACAGGTGGA GTATCAGTTTAGTGACATGAGCTTGCTAGCAAATGAATCTTTCCAGAAACAGATGCATAAGGATCCTGAAGGTTATGTTC CAATAACTGTGATTGCTTCCACAAAAAAAGTCAAGTCTCTTATTAGTAACATTCATCTGCTCACCCAAGCTCTTCGTAAT TCTTCAAAACTTGTTTTGAGTGTTGATAGTAAAAAGGTTAAACGCAAACATCCTTTCACTGATAAGGAGAAAGAGGATTT GCAGTCTCGTACTGTTGTAGCAGAGAATTTACCTGACGATCATTCCCATCAAAATCTTCAGAAAATATTTTCTGTAGTTG GGAGCGTGAAAACAATCAGAATATGCCATCCACAGGAACCTAACTCTTCTCGCCCAAAATGCGAATTCTTAATCAGTAAC AAGCTCCATGCACTAGTGGAATATGAGACACAAGATATAGCTGAGAAAGCTGTTGAGAAGTTGAATGATGAAAGGAATTG GAGGAAAGGGATGCGAGTGAGACTGCTGCTTAGATGCTCACCAAAATCTGTTTTGAAGAGTAGAAAGTCAGATTTTGATG GTTATTTAGATGATGAAGAGATTCTAAATTCTGAAGCTACTGAAGATTCTTCCCATCCAAACAACACTGAATTATCTGAT AATGTTGATGAAAATTCAGCAGGATCTAAGAAAGGATGGGCTAGAGGGCATGGAAAAGGAAGAGGACGCACTCAAAACCA CACTGGACGTGGCCTTCTCGCCCCACCATCACAAACAAGCAACCATGTCCCCTGTGAAGTATCCACCATCAAAATCACAA AGGGACCAAGAATGCCAGATGGTACACGAGGTTTCGCCATGGGAAGGGGCAAGCAAATGAGTCCTCCTACTCAACCCAGT TCACCTCAAGAGTAA
Protein sequence (LotjaGi4g1v0071000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKMAQAQPEEKIHEKSEKEIQETRHSSFKFNAQAPEFVPRSHSQMPISGYFYPCFQILGASGESDWFYVGDQDSACLIPT TANVALPNCSKNVLTPDLQQKIVKQVEYQFSDMSLLANESFQKQMHKDPEGYVPITVIASTKKVKSLISNIHLLTQALRN SSKLVLSVDSKKVKRKHPFTDKEKEDLQSRTVVAENLPDDHSHQNLQKIFSVVGSVKTIRICHPQEPNSSRPKCEFLISN KLHALVEYETQDIAEKAVEKLNDERNWRKGMRVRLLLRCSPKSVLKSRKSDFDGYLDDEEILNSEATEDSSHPNNTELSD NVDENSAGSKKGWARGHGKGRGRTQNHTGRGLLAPPSQTSNHVPCEVSTIKITKGPRMPDGTRGFAMGRGKQMSPPTQPS SPQE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 24 | 24 | - | – | |
| PANTHER | 7 | 399 | 393 | 2.1E-194 | – | |
| PANTHER | 7 | 399 | 393 | 2.1E-194 | – | |
| Pfam | 27 | 42 | 16 | 1.2E-4 | ||
| ProSiteProfiles | 92 | 183 | 92 | 22.317 | ||
| SUPERFAMILY | 94 | 179 | 86 | 6.17E-20 | ||
| Gene3D | 95 | 181 | 87 | 4.6E-22 | ||
| SMART | 96 | 176 | 81 | 4.2E-32 | ||
| Pfam | 102 | 160 | 59 | 1.3E-15 | ||
| PRINTS | 105 | 122 | 18 | 2.1E-7 | ||
| PRINTS | 131 | 146 | 16 | 2.1E-7 | ||
| PRINTS | 162 | 175 | 14 | 2.1E-7 | ||
| SUPERFAMILY | 167 | 276 | 110 | 2.71E-12 | ||
| Gene3D | 182 | 282 | 101 | 6.1E-12 | ||
| PRINTS | 184 | 200 | 17 | 2.1E-7 | ||
| CDD | 190 | 277 | 88 | 1.96161E-41 | ||
| ProSiteProfiles | 190 | 275 | 86 | 10.36 | ||
| SMART | 191 | 276 | 86 | 5.7E-4 | ||
| Pfam | 195 | 263 | 69 | 3.8E-7 | ||
| PRINTS | 240 | 258 | 19 | 2.1E-7 | ||
| MobiDBLite | 304 | 404 | 101 | - | – | |
| MobiDBLite | 307 | 326 | 20 | - | – | |
| MobiDBLite | 350 | 367 | 18 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | RNA processing | Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules. | ||
| Cellular component | Ribonucleoprotein complex | A macromolecular complex containing both protein and RNA molecules. |
Expression pattern of LotjaGi4g1v0071000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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