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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0085100 |
| Transcript ID | LotjaGi4g1v0085100.4 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Vesicle-associated membrane protein, putative; TAIR: AT1G04760.1 vesicle-associated membrane protein 726; Swiss-Prot: sp|Q9MAS5|VA726_ARATH Putative vesicle-associated membrane protein 726; TrEMBL-Plants: tr|B7FGH4|B7FGH4_MEDTR Synaptobrevin-like protein; Found in the gene: LotjaGi4g1v0085100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:11217137..11220436) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGTCAGAACCAGAGATCTCTGATCTACGCGTTCGTTTCTCGCGGTAGCGTGATTCTCTCTGAGTACACCGAGTTCAG CGGAAACTTCAACTCCATCGCGTTTCAGTGCCTTCAGAAGCTACCTGCTTCCAACAACAAATTCACCTACAACTGTGATG GCCACACCTTCAATTACCTCGTCGATAACGGCTACAGTTAGTTCCTCCTCCGATCTATGCGAATCGGTCTTCTCAAACAT GATTTCATCATCAAAACCAATAATCAATTCACTAGTAGTATTAGCATATGCATGATTTTATGTTAAGACTGTTGTTTATT GAAATTCATGATTTGTTATATGTATAGGGTTAGTGGTAGGTGGTGATTTTGTTTAGAAATTGATTGATGGCTCATGCTCG GTGTGTTTGTGTTGTGTTTGTAGCGTATTGTGTTGTCGCGGATGAGTCGGCTGGAAGGCAGGTGCCTGTGGCTTTTCTGG AGCGTGTGAAGGATGATTTTGTTGCGAAATATGGCGGTGGGAAGGCCGCCACAGCTGCTCCTAACAGCCTGAACAAGGAA TTTGGGTATTTGTTTGAGTTTGTGTTGAGATTAGCTTAATTGTGATTGTGTTCGTGATTGTGAATGATCTTTGCTTTGTG CAGGCCCAAGTTGAAGGAACACATGCAGTACTGTGTTGATCATCCTGAAGAGGTTAGCAAGCTGGCAAAGGTGAAAGCTC AGGTTTCTGAAGTTAAAGGTGTCATGATGGAGAATATTGAAAAGGTAACAGATACTCGGCTTATTCTGCTTTGACTTGAG AGGATCATGATATTTTTTGATCAGATTGAATTGATTTATAATTGTAGAATGTAGATCACAAGAATAAGAGGTTGTAATAG AAATTATGAAATGATTGTTTTTAACTGTTATGAAAATAAAAACAACAGAGGCCACTGAACACAAAGGGTGGATTTTTTAG AAAACCTGAACTTGTGATTACTTATTAAATTTGTTGGGCCAGCATTTTATCAAATTTTGTGCATTGTGCACCTGCTGCGC TGAGTCTGTAATACTTGTTTGGCAGCAATTCTTTTCATGTGTTAAACGACAGATGGCTTTGAAATGTGAGATACATGCAT AATTTTATGTGTTGTGTTTAGTTGGGCGTACTTTAAGTTTTCCAGTTCTATTAGCGGGGGTAATTAGGGTTTGTTGAGTT CTTGTAACCCTACAGAGACCCTGAAAATCGAATTAAGATTTGTGCTACCTCCCTTGGACCGTCGATGAGGCTCCACCAGC CACCAATGAGCCTCTGATTCTCGCCTCCTTCTTCCTCCTCCTTTTCCTCCTTCTCTGTCCTGCTTCTTCCTCCTTCCTCC TCCTCCTTCGGTGTAGCGTCCATCCTGCTTTACGCTATACTGCTAAGTGCTAAAGCGTTTTTTGGGCTTGCCGCTCCGCT CCGCTATCCGGGGTTGACAAACCTGTAATTACTGATTCAGTTCCCTACCTCTGCACCAGAGTAGAGCAGAATTGGGACAA GATGAACAATTTCTTCAGAATCACTCACAATCACTTGTATTTGAGAGACTAGCACCATAGCACTCACCTCACTAGATCTG ATTAACAACAAATGACCAACCTCCTCTCCCTCTCAACCCCTCTTCCTATTTATAGCATACGTACCTTATCTAGTGATCCA ATTACCTAACTATTATTCTATTCACTAACTGTACCTATCACTGCAAGGGAAATGAAGAAGGGGAAGAGGGATGTTGCCTG AGAATATTTATTGACTACAGATCTCAAATCAAATAAAATTATATTTCGGTGTCCACTAGCAATGTGGGGCAGGGCATTGG CAAGAACTTCCATTTAGTAGGAAGGAGCACACAAAATTTATGACTTATGATATGAGTTCACTTGGTTACCTTACTTTTAA TGCTATGCACCTAAGGGTTTTTACTTTTTATTTATTAGCTCCTATATAAGTTGATTGTGATATTTGTTTATGACTTATGG TTATGGCTATGATTTTGTTTTGTGAGACATAAGTTCCGCAGTCTATCCTAGTATGAAATTATTACATTAAGTTCTTATAA TAGGTTAATGAAACCTCTATTTGCAGTTTATTTGCTGCCAAAAAGAAAATTGCTTGTCTAACTGAAATATAGATCACATG TTACTATATGATCACTTTAAATCCAAAATGTAATGATAAAGAATATCTTATTGATATTATTCAAGATCCACATCTGACAT GCCTAATTGAATTGATTCATTAAATTGAATCAATTCAATACATTTCAAATATTAGTCAAGAATATCTCATTTGTACCAAT AGGTGCTATATTGGATTTCAGTAAGAAAAGTCAGTTCAGTTAAATTACTGTTCTTCTACCTCTGGTTTGCTGATGATACT ATTATTGTATTATCCTTTTTGAACGAGGATGACTTCTATACAAAATTTATCTATTCTTAAGTTCTTCAAGTTATCACTTA CCTAAATGAATCTGCTAATGTTAGTTTGTTTGATAACTAATACAATGTTTACTGACTTCTCATGTCTTTAGTTAATATTA GTTATTTGAAAACTAATACAATGTTTGTCTTTTTCTCTTGTTGAAATGTATCAAAATCTAAATCTTAGGGAAGTTTTGGA GGCACAGAAATTCTGCTCCTCATAATAGTTAACAATTCATCTACTGTACTTGGGTTGTAGCTGTATTTTGCTTTGAATAT GACAATTTAAGTTTACTTCTGTTTTCTCAGCTAAAAACTAAAAATAAGCCAAGATATATTTGTTGCAGTTAATTGGCCTG CAAACTAAATTTGAATATGACTATTTAAGTTTACTTCTGTTTCAAAGGAAAATTGAAACTGCGGCATTTCAGTGACATAT GAAGGAGCAAATTCTTGTCTCTCTTTTAAATGCCACAGTGAAAATTTATTATTCCATAGGTATGCTACATAAAAGCAGAG ATCAAACAAGTTAATACACATTAGAAGACATAAATGTTATTCAAGTTTTTAGCTTCTCATACATTCAATCAGATTAAGAT ATCTAATGCATAAGGACACATTCATTAAGATTGTATTGACATGTTCGTACTTCAATGTAGGTTCTGGACAGGGGGGAAAA GATTGAGCTTCTGGTTGACAAGACTGAGAACCTCCATCACCAGGTTAGTATTTTGTGCGCTTGAAAGTTCTTGAACTTGT GGAAGTTTTTAAATGCTTCAGGATCAGTAGTAACTATTTTTTATTTAGTTTCTTTTTTATTGGTGCATCGGAAGGATAAA TTGCACCATCCAGGGATTGA
CDS sequence (LotjaGi4g1v0085100.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTCAGAACCAGAGATCTCTGATCTACGCGTTCGTTTCTCGCGGTAGCGTGATTCTCTCTGAGTACACCGAGTTCAG CGGAAACTTCAACTCCATCGCGTTTCAGTGCCTTCAGAAGCTACCTGCTTCCAACAACAAATTCACCTACAACTGTGATG GCCACACCTTCAATTACCTCGTCGATAACGGCTACACGTATTGTGTTGTCGCGGATGAGTCGGCTGGAAGGCAGGTGCCT GTGGCTTTTCTGGAGCGTGTGAAGGATGATTTTGTTGCGAAATATGGCGGTGGGAAGGCCGCCACAGCTGCTCCTAACAG CCTGAACAAGGAATTTGGGCCCAAGTTGAAGGAACACATGCAGTACTGTGTTGATCATCCTGAAGAGGTTAGCAAGCTGG CAAAGGTGAAAGCTCAGGTTTCTGAAGTTAAAGGTGTCATGATGGAGAATATTGAAAAGGTTCTGGACAGGGGGGAAAAG ATTGAGCTTCTGGTTGACAAGACTGAGAACCTCCATCACCAGTCCAGGGATTGA
Protein sequence (LotjaGi4g1v0085100.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGQNQRSLIYAFVSRGSVILSEYTEFSGNFNSIAFQCLQKLPASNNKFTYNCDGHTFNYLVDNGYTYCVVADESAGRQVP VAFLERVKDDFVAKYGGGKAATAAPNSLNKEFGPKLKEHMQYCVDHPEEVSKLAKVKAQVSEVKGVMMENIEKVLDRGEK IELLVDKTENLHHQSRD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 2 | 129 | 128 | 2.5E-45 | – | |
| PANTHER | 4 | 177 | 174 | 5.4E-116 | – | |
| PANTHER | 4 | 177 | 174 | 5.4E-116 | – | |
| SUPERFAMILY | 8 | 123 | 116 | 1.16E-28 | ||
| CDD | 9 | 123 | 115 | 2.69833E-36 | – | |
| ProSiteProfiles | 12 | 116 | 105 | 28.435 | ||
| SMART | 33 | 115 | 83 | 3.7E-28 | ||
| Pfam | 36 | 113 | 78 | 3.2E-25 | ||
| SUPERFAMILY | 127 | 176 | 50 | 3.77E-16 | – | |
| Gene3D | 130 | 177 | 48 | 2.6E-18 | – | |
| Pfam | 131 | 176 | 46 | 1.2E-15 | ||
| ProSiteProfiles | 132 | 177 | 46 | 15.555 | ||
| CDD | 132 | 176 | 45 | 4.49848E-21 | – | |
| PRINTS | 137 | 156 | 20 | 9.3E-10 | ||
| ProSitePatterns | 150 | 169 | 20 | - | ||
| PRINTS | 157 | 176 | 20 | 9.3E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Vesicle-mediated transport | A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane. |
Expression pattern of LotjaGi4g1v0085100.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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