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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0120100 |
| Transcript ID | LotjaGi4g1v0120100.3 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | GTPase Era; TAIR: AT5G66470.1 GTP-binding protein Era-like protein; Swiss-Prot: sp|B2V2K0|ERA_CLOBA GTPase Era; TrEMBL-Plants: tr|A0A0S3R4P9|A0A0S3R4P9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0120100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:17346569..17350729) extracted from Lotus japonicus Gifu genome v1.2.
CGCGCGGCATCAGCTGCATCTGCAACCGTTCCCCAACCTCAATTCTCATTCCAACTTCAACACTCTCTCTTCCCCGTTCA TGGCTTCACACTCTTCCACCGAAACCGCACCGATTCGCCTTCACATCTTTGTTGCAGAACCAGGCACCGCCATTCCCAAC CATTCGCCAACAAACAACACCACCTCGTGCTCCATGAAGAACCACAACAACAAGAAGAGGAAGAAGATGAAGAAGTAGAA GTTGAAGAAGAAGAAGCTTCGTATTCGGATGATGACACTTCCTTCTTGTCCCTCACCGTTAAGCCTGACCGGAACATGGC CTTGCTCGACGATTACGAGACGGAGGAGCTCGATTTCGACGATGGCCCTAACCACAGAAGCGGTTAGGATTCGGTTTCCT CTGTTGTTTTGAATTTTTTGATTTTTTCTGAAATTGATTAATATTTCATGATTGTGCCAAAATCAATTAATTTTTATTTT GTTACAGTTAATTTAGTTAAGCATGGTTTGGAGTTTGGAGAGCTTTGAGTTTGTGCTTGCTGTTGCATTTGTTAATTTTT TATGTGTTATAATGTAATGCAGGATATGTGGCTTTACTTGGCAAGCCAAATGTTGGCAAGAGTACACTAGCAAACCAAAT GGTTGGTCAAAAGTTGTCGATAGTTACCGATAAACCGCAAACGACAAGGCATCGAATTCTCTGTATATGTTCTGGAACGG ATTATCAGGTTTTTAGTCTTGAGTGGTTGCTAATTCTTCTGTTTGAGTTTATCAGCATGTTTACTTGCCTCTCATTTTCC TGCATGCCCTTCCCACATGAATCATGGATTCTGCATTTCCGAAATGCATAATACTATTCAGAGTCTCTAGGATTTTTGAA TTGAAGATTGGTTTTTTTCTATAATCAATGTGATCTTCATGACATTCTACTTAATGTTCTCGAAATATTAGAGGGGGTTT ATTCCCATCTCATCATAGGAAATTTAATTTTCTTAATAATATTATTAACTAGAACAAAAGACATTCAATATGTGATTTGA GTTTTCTTGGCTATTATCCTAGCCTTGAATTAATGGATGCACACTTGCACAGCAGCATTTGTGTTATATCTTCATTTCTG TGACCTGTGAATCTCTTGCAGATGGTACTTTATGACACGCCTGGCGTTCTACAGAAGGAAATGCACAAGTTAGACTCAAT GATGATGAAAAATGTTCGCAGTGCGGCGGTTAATGCGGACTGTGTATTGGTTCTTGTTGATGCATGTAAAGCACCTGAAA AAGTATGGTTCTTGGTTTAAATAACTGTTCTATTTATTTTCCTTTTTTGCTGAATTACTTGCTGTTCTAGATTGATGAAT TGTTGGAAGAAGGCATAGGAGATCTCAAAGATAAACCTCCCGTTCTACTGATTCTGAACAAGAAGGATCTTATAAAACCT GGAGAAGTTGCAAAGAAACTTGAGGTTGGAGCTCATTAATTAAAGTTTATATTGGAATGTATTAGTTAATCCACTGATCT GGCATGATTTTTCCAGTGCCGTATGTCCTAATTATTTGATATTTCTCGCAGTGGTATGAGAAATTTACCAACGTTGATGA GGTTATACCAGTTAGTGCTAAATATGGTCATGGGGTTGCAGATGTCAAGGACTGGATACTGTCAAAGCTTCCTAATGGAC CATCTTATTATCCAAAAGCAAGTCAAAGTTTTGCTGCTCTCATTCTATTGTCTATTATTGCATCATCACTGTCTCATTTC ACTTTTAGAGATAAAAACAGGAACCATTAGACACTGAACTAACCATTTCTTCTGCTATTCCATGCCTGACTATGAAAAGA ATAAATGCATTTGATTTAGAGTTCAAAATTCAGAGTAAACTTCAGTGAAAACTGGCTAATTACCTTGGGTTTTATGTTGA AGTTCATTTAAATTGAACCATAAATGCATACAACAGTTACCAATACACATGTTGTTTAATTTACTTTAAGGGTACCTGTT AGTTTTTCTTGTGTATAAAGATGTGTTATGAACAATAAAGTGACAGTCATCCTTGACTGATCAAATTTGTGTAGAGATCT TACATCTTGGAAGGTCATTTTTTGAATTCATCTATCAAGGATAAACGAATTGGTTCATGTGTTTTTTCCATAATGTGAAC CACCTCTATAGGCATAGAGTCGCATTGACGGTGATATTGAGAAGGCTATTAGTAGCACACTAGTACTGGCTGGCAACTGT GCGTGACTCTCATAGTTCCTGTACTGTAAGATTTAGAAATAGAAATAATTTTAGATGATGACGAACATTATATAATGCCA TGCCCTTTAATATAGGTCTAATGGCGCAAATAGTGTTGACTCTGAAGGACCAATATTTCAAATGTCGCGCCATCAATATT CCTCCAATACTAGAGTGTGTTGCAGATCCCCTCTAGCTATCACTATAGTATTCTGTTAAAACCTTTAGATATGATAAGAA CATGAGTGACTTGTCATTTCTTCTGCATACATTTCTTTCATGTGCTGCACTTACCTTAATCTTGTTCTTGAATTCACAGG ACATTGTCAGTGAGCATCCAGAAAGATTTTTTGTTGCTGAAATTGTTAGAGAAAAGATTTTTATGCAGTATCGAAATGAA ATTCCCTACGCATGCCAGGTGATCATTGAGTTCATTATTTTATTTATGATACAGCTACCTTCCCTTCACCCCACAAAAGG GGAAAAAAAACAATAAAGAAGAAGAAAGAGGTTTCGAACAGGAAAAAAAGGAATTGAAGTTGTAACTAATTTCCTTTTAT ACAAATGCTTACAATTTTTTTTCCTATTCTTCCAGGTGAATGTTGTAAGCTATAAGGCTCGACCGAATGCGAAAGATTTC ATACAAGTCGAGATTTTGGTTGAGAAAAACTCACAAAAGATGATCGTTATTGGAAGAGTATGTAATTTATATCCATTGTG AAAAACCAGAATAGATCAATCCAAAAATCAATGAACCAGTTAGATGTCTTGTTTTTAAATTAAAAAACCCAGTTGATTTT CCATGAAAAACTGGTGACGATGAATTGCTTTTGATTGGTTGTTTTTAATTTTATTAATTTTTGTATTTTTTAATTTAAAA AAAGAATTTTAGCAAAATAAAAATCAATGCTAAGTTGTAGAAGTTCACATGTGGATTATTACAATTTAAGCTTTCATTAT TGATAGTTTTTAATATTAGAATGTATAATATGGTCAATTTTTGTTAATTCTAAATTTTGCTTAGCTTAAATTCTTGGTTT TTTATTTATTTTACTCCGTGATGTATTTTATAATATTAAAAATATATTTAATTATCACCTTTTTAACCACGGTTTAACCA TAGTGAAACCAAAGAATTGTGAACTAGAATTTTCATCAGTACAATAGTAGTCTGTTACTCTGATATTTAAGCAATTGCTT ATCTCATAATTCAGTAAATTGTTTGTGAACTTATGGAATTGATTTATACAAGACACAGTGAAGTGCAATACTGTGATTGG TATTTCTTTGATTCTGTCTTTTTGGCATTTGTTTTGAATTTACTCACTTTAAACTGTATATGACAACATTTTGTATGAAA GGATTTTTTTATATGCTTGAGGTGTTGACCCTTGACATGGCTTGCAACCAAAATTAATACCAATTTCCTAATGTTTTGTT CATATTGAATTCTTACGCATTATGTTTCCATTGGGTGAAATAATCTAATACTGCTAATATATGCTTCTGCCCCCCTCAAA TGATCTGTTGCATAGTTATGCTTGAATAGTAACCCACATGTATGTTGTGATCAACTACTTCAGGAAGGAAAGGCTTTGAA ACTGCTTGCTACAGCTTCCCGCCTTGACATAGAAGATTTTCTACAGAAGAAAGTTTATCTTGAGGTGCATATCCACAGAA TTTTATTTTGTATCTATGCTACATTTGAACCTGAACCTGCATATTTTGCTGGTTTATTTATTAATCTTGATTCTTGAGAG TCAAGTTGTAACAATCATCATGCATTTTACTTCGAGAGTTGAAAAATATTTACTCAACACTGGTGTCTGAACAGATTGAA GTGAAGGTTAGAGAAAATTGGCGACAAGACGAAGGCCTCCTTAAGGACTATGGTTATGGGGGTCAGATACGTGTTTTATG A
CDS sequence (LotjaGi4g1v0120100.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCTTGCTCGACGATTACGAGACGGAGGAGCTCGATTTCGACGATGGCCCTAACCACAGAAGCGGATATGTGGCTTT ACTTGGCAAGCCAAATGTTGGCAAGAGTACACTAGCAAACCAAATGGTTGGTCAAAAGTTGTCGATAGTTACCGATAAAC CGCAAACGACAAGGCATCGAATTCTCTGTATATGTTCTGGAACGGATTATCAGGTTTTTAGTCTTGAGTGGTTGCTAATG GTACTTTATGACACGCCTGGCGTTCTACAGAAGGAAATGCACAAGTTAGACTCAATGATGATGAAAAATGTTCGCAGTGC GGCGGTTAATGCGGACTGTGTATTGGTTCTTGTTGATGCATGTAAAGCACCTGAAAAAATTGATGAATTGTTGGAAGAAG GCATAGGAGATCTCAAAGATAAACCTCCCGTTCTACTGATTCTGAACAAGAAGGATCTTATAAAACCTGGAGAAGTTGCA AAGAAACTTGAGTGGTATGAGAAATTTACCAACGTTGATGAGGTTATACCAGTTAGTGCTAAATATGGTCATGGGGTTGC AGATGTCAAGGACTGGATACTGTCAAAGCTTCCTAATGGACCATCTTATTATCCAAAAGACATTGTCAGTGAGCATCCAG AAAGATTTTTTGTTGCTGAAATTGTTAGAGAAAAGATTTTTATGCAGTATCGAAATGAAATTCCCTACGCATGCCAGGTG AATGTTGTAAGCTATAAGGCTCGACCGAATGCGAAAGATTTCATACAAGTCGAGATTTTGGTTGAGAAAAACTCACAAAA GATGATCGTTATTGGAAGAGAAGGAAAGGCTTTGAAACTGCTTGCTACAGCTTCCCGCCTTGACATAGAAGATTTTCTAC AGAAGAAAGTTTATCTTGAGATTGAAGTGAAGGTTAGAGAAAATTGGCGACAAGACGAAGGCCTCCTTAAGGACTATGGT TATGGGGGTCAGATACGTGTTTTATGA
Protein sequence (LotjaGi4g1v0120100.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MALLDDYETEELDFDDGPNHRSGYVALLGKPNVGKSTLANQMVGQKLSIVTDKPQTTRHRILCICSGTDYQVFSLEWLLM VLYDTPGVLQKEMHKLDSMMMKNVRSAAVNADCVLVLVDACKAPEKIDELLEEGIGDLKDKPPVLLILNKKDLIKPGEVA KKLEWYEKFTNVDEVIPVSAKYGHGVADVKDWILSKLPNGPSYYPKDIVSEHPERFFVAEIVREKIFMQYRNEIPYACQV NVVSYKARPNAKDFIQVEILVEKNSQKMIVIGREGKALKLLATASRLDIEDFLQKKVYLEIEVKVRENWRQDEGLLKDYG YGGQIRVL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 325 | 325 | 7.9E-148 | – | |
| PANTHER | 1 | 325 | 325 | 7.9E-148 | – | |
| Gene3D | 18 | 210 | 193 | 2.4E-40 | – | |
| Hamap | 20 | 321 | 302 | 30.613 | ||
| CDD | 20 | 197 | 178 | 6.11944E-64 | ||
| ProSiteProfiles | 21 | 199 | 179 | 39.887 | ||
| TIGRFAM | 23 | 304 | 282 | 8.0E-66 | ||
| TIGRFAM | 25 | 191 | 167 | 5.2E-18 | ||
| Pfam | 25 | 150 | 126 | 1.7E-20 | ||
| SUPERFAMILY | 25 | 231 | 207 | 1.42E-41 | ||
| SUPERFAMILY | 206 | 321 | 116 | 2.01E-36 | ||
| Gene3D | 211 | 325 | 115 | 7.2E-37 | ||
| ProSiteProfiles | 230 | 307 | 78 | 10.487 | ||
| Pfam | 233 | 310 | 78 | 1.1E-14 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of LotjaGi4g1v0120100.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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