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LotjaGi4g1v0120100.5

Overview

Field Value
Gene ID LotjaGi4g1v0120100
Transcript ID LotjaGi4g1v0120100.5
Related isoforms 5
Lotus japonicus genome version Gifu v1.2
Description GTPase Era; TAIR: AT5G66470.1 GTP-binding protein Era-like protein; Swiss-Prot: sp|B2V2K0|ERA_CLOBA GTPase Era; TrEMBL-Plants: tr|A0A0S3R4P9|A0A0S3R4P9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0120100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:17346946..17350729) extracted from Lotus japonicus Gifu genome v1.2.

AAGCGGTTAGGATTCGGTTTCCTCTGTTGTTTTGAATTTTTTGATTTTTTCTGAAATTGATTAATATTTCATGATTGTGC CAAAATCAATTAATTTTTATTTTGTTACAGTTAATTTAGTTAAGCATGGTTTGGAGTTTGGAGAGCTTTGAGTTTGTGCT TGCTGTTGCATTTGTTAATTTTTTATGTGTTATAATGTAATGCAGGATATGTGGCTTTACTTGGCAAGCCAAATGTTGGC AAGAGTACACTAGCAAACCAAATGGTTGGTCAAAAGTTGTCGATAGTTACCGATAAACCGCAAACGACAAGGCATCGAAT TCTCTGTATATGTTCTGGAACGGATTATCAGGTTTTTAGTCTTGAGTGGTTGCTAATTCTTCTGTTTGAGTTTATCAGCA TGTTTACTTGCCTCTCATTTTCCTGCATGCCCTTCCCACATGAATCATGGATTCTGCATTTCCGAAATGCATAATACTAT TCAGAGTCTCTAGGATTTTTGAATTGAAGATTGGTTTTTTTCTATAATCAATGTGATCTTCATGACATTCTACTTAATGT TCTCGAAATATTAGAGGGGGTTTATTCCCATCTCATCATAGGAAATTTAATTTTCTTAATAATATTATTAACTAGAACAA AAGACATTCAATATGTGATTTGAGTTTTCTTGGCTATTATCCTAGCCTTGAATTAATGGATGCACACTTGCACAGCAGCA TTTGTGTTATATCTTCATTTCTGTGACCTGTGAATCTCTTGCAGATGGTACTTTATGACACGCCTGGCGTTCTACAGAAG GAAATGCACAAGTTAGACTCAATGATGATGAAAAATGTTCGCAGTGCGGCGGTTAATGCGGACTGTGTATTGGTTCTTGT TGATGCATGTAAAGCACCTGAAAAAGTATGGTTCTTGGTTTAAATAACTGTTCTATTTATTTTCCTTTTTTGCTGAATTA CTTGCTGTTCTAGATTGATGAATTGTTGGAAGAAGGCATAGGAGATCTCAAAGATAAACCTCCCGTTCTACTGATTCTGA ACAAGAAGGATCTTATAAAACCTGGAGAAGTTGCAAAGAAACTTGAGGTTGGAGCTCATTAATTAAAGTTTATATTGGAA TGTATTAGTTAATCCACTGATCTGGCATGATTTTTCCAGTGCCGTATGTCCTAATTATTTGATATTTCTCGCAGTGGTAT GAGAAATTTACCAACGTTGATGAGGTTATACCAGTTAGTGCTAAATATGGTCATGGGGTTGCAGATGTCAAGGACTGGAT ACTGTCAAAGCTTCCTAATGGACCATCTTATTATCCAAAAGCAAGTCAAAGTTTTGCTGCTCTCATTCTATTGTCTATTA TTGCATCATCACTGTCTCATTTCACTTTTAGAGATAAAAACAGGAACCATTAGACACTGAACTAACCATTTCTTCTGCTA TTCCATGCCTGACTATGAAAAGAATAAATGCATTTGATTTAGAGTTCAAAATTCAGAGTAAACTTCAGTGAAAACTGGCT AATTACCTTGGGTTTTATGTTGAAGTTCATTTAAATTGAACCATAAATGCATACAACAGTTACCAATACACATGTTGTTT AATTTACTTTAAGGGTACCTGTTAGTTTTTCTTGTGTATAAAGATGTGTTATGAACAATAAAGTGACAGTCATCCTTGAC TGATCAAATTTGTGTAGAGATCTTACATCTTGGAAGGTCATTTTTTGAATTCATCTATCAAGGATAAACGAATTGGTTCA TGTGTTTTTTCCATAATGTGAACCACCTCTATAGGCATAGAGTCGCATTGACGGTGATATTGAGAAGGCTATTAGTAGCA CACTAGTACTGGCTGGCAACTGTGCGTGACTCTCATAGTTCCTGTACTGTAAGATTTAGAAATAGAAATAATTTTAGATG ATGACGAACATTATATAATGCCATGCCCTTTAATATAGGTCTAATGGCGCAAATAGTGTTGACTCTGAAGGACCAATATT TCAAATGTCGCGCCATCAATATTCCTCCAATACTAGAGTGTGTTGCAGATCCCCTCTAGCTATCACTATAGTATTCTGTT AAAACCTTTAGATATGATAAGAACATGAGTGACTTGTCATTTCTTCTGCATACATTTCTTTCATGTGCTGCACTTACCTT AATCTTGTTCTTGAATTCACAGGACATTGTCAGTGAGCATCCAGAAAGATTTTTTGTTGCTGAAATTGTTAGAGAAAAGA TTTTTATGCAGTATCGAAATGAAATTCCCTACGCATGCCAGGTGATCATTGAGTTCATTATTTTATTTATGATACAGCTA CCTTCCCTTCACCCCACAAAAGGGGAAAAAAAACAATAAAGAAGAAGAAAGAGGTTTCGAACAGGAAAAAAAGGAATTGA AGTTGTAACTAATTTCCTTTTATACAAATGCTTACAATTTTTTTTCCTATTCTTCCAGGTGAATGTTGTAAGCTATAAGG CTCGACCGAATGCGAAAGATTTCATACAAGTCGAGATTTTGGTTGAGAAAAACTCACAAAAGATGATCGTTATTGGAAGA GTATGTAATTTATATCCATTGTGAAAAACCAGAATAGATCAATCCAAAAATCAATGAACCAGTTAGATGTCTTGTTTTTA AATTAAAAAACCCAGTTGATTTTCCATGAAAAACTGGTGACGATGAATTGCTTTTGATTGGTTGTTTTTAATTTTATTAA TTTTTGTATTTTTTAATTTAAAAAAAGAATTTTAGCAAAATAAAAATCAATGCTAAGTTGTAGAAGTTCACATGTGGATT ATTACAATTTAAGCTTTCATTATTGATAGTTTTTAATATTAGAATGTATAATATGGTCAATTTTTGTTAATTCTAAATTT TGCTTAGCTTAAATTCTTGGTTTTTTATTTATTTTACTCCGTGATGTATTTTATAATATTAAAAATATATTTAATTATCA CCTTTTTAACCACGGTTTAACCATAGTGAAACCAAAGAATTGTGAACTAGAATTTTCATCAGTACAATAGTAGTCTGTTA CTCTGATATTTAAGCAATTGCTTATCTCATAATTCAGTAAATTGTTTGTGAACTTATGGAATTGATTTATACAAGACACA GTGAAGTGCAATACTGTGATTGGTATTTCTTTGATTCTGTCTTTTTGGCATTTGTTTTGAATTTACTCACTTTAAACTGT ATATGACAACATTTTGTATGAAAGGATTTTTTTATATGCTTGAGGTGTTGACCCTTGACATGGCTTGCAACCAAAATTAA TACCAATTTCCTAATGTTTTGTTCATATTGAATTCTTACGCATTATGTTTCCATTGGGTGAAATAATCTAATACTGCTAA TATATGCTTCTGCCCCCCTCAAATGATCTGTTGCATAGTTATGCTTGAATAGTAACCCACATGTATGTTGTGATCAACTA CTTCAGGAAGGAAAGGCTTTGAAACTGCTTGCTACAGCTTCCCGCCTTGACATAGAAGATTTTCTACAGAAGAAAGTTTA TCTTGAGGTGCATATCCACAGAATTTTATTTTGTATCTATGCTACATTTGAACCTGAACCTGCATATTTTGCTGGTTTAT TTATTAATCTTGATTCTTGAGAGTCAAGTTGTAACAATCATCATGCATTTTACTTCGAGAGTTGAAAAATATTTACTCAA CACTGGTGTCTGAACAGATTGAAGTGAAGGTTAGAGAAAATTGGCGACAAGACGAAGGCCTCCTTAAGGACTATGGTTAT GGGGGTCAGATACGTGTTTTATGA
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0120100.5) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGTTGGTCAAAAGTTGTCGATAGTTACCGATAAACCGCAAACGACAAGGCATCGAATTCTCTGTATATGTTCTGGAAC GGATTATCAGATGGTACTTTATGACACGCCTGGCGTTCTACAGAAGGAAATGCACAAGTTAGACTCAATGATGATGAAAA ATGTTCGCAGTGCGGCGGTTAATGCGGACTGTGTATTGGTTCTTGTTGATGCATGTAAAGCACCTGAAAAAATTGATGAA TTGTTGGAAGAAGGCATAGGAGATCTCAAAGATAAACCTCCCGTTCTACTGATTCTGAACAAGAAGGATCTTATAAAACC TGGAGAAGTTGCAAAGAAACTTGAGTGGTATGAGAAATTTACCAACGTTGATGAGGTTATACCAGTTAGTGCTAAATATG GTCATGGGGTTGCAGATGTCAAGGACTGGATACTGTCAAAGCTTCCTAATGGACCATCTTATTATCCAAAAGACATTGTC AGTGAGCATCCAGAAAGATTTTTTGTTGCTGAAATTGTTAGAGAAAAGATTTTTATGCAGTATCGAAATGAAATTCCCTA CGCATGCCAGGTGAATGTTGTAAGCTATAAGGCTCGACCGAATGCGAAAGATTTCATACAAGTCGAGATTTTGGTTGAGA AAAACTCACAAAAGATGATCGTTATTGGAAGAGAAGGAAAGGCTTTGAAACTGCTTGCTACAGCTTCCCGCCTTGACATA GAAGATTTTCTACAGAAGAAAGTTTATCTTGAGATTGAAGTGAAGGTTAGAGAAAATTGGCGACAAGACGAAGGCCTCCT TAAGGACTATGGTTATGGGGGTCAGATACGTGTTTTATGA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0120100.5) extracted from Lotus japonicus Gifu v1.2 Proteins.

MVGQKLSIVTDKPQTTRHRILCICSGTDYQMVLYDTPGVLQKEMHKLDSMMMKNVRSAAVNADCVLVLVDACKAPEKIDE LLEEGIGDLKDKPPVLLILNKKDLIKPGEVAKKLEWYEKFTNVDEVIPVSAKYGHGVADVKDWILSKLPNGPSYYPKDIV SEHPERFFVAEIVREKIFMQYRNEIPYACQVNVVSYKARPNAKDFIQVEILVEKNSQKMIVIGREGKALKLLATASRLDI EDFLQKKVYLEIEVKVRENWRQDEGLLKDYGYGGQIRVL
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR42698
1 276 276 8.6E-132 –
CDD
cd04163
1 148 148 2.07297E-49
IPR030388
Hamap
MF_00367
1 272 272 23.894
IPR005662
ProSiteProfiles
PS51713
1 150 150 36.243
IPR030388
PANTHER
PTHR42698:SF2
1 276 276 8.6E-132 –
Gene3D
G3DSA:3.40.50.300
1 161 161 7.2E-31 –
TIGRFAM
TIGR00436
2 255 254 1.6E-58
IPR005662
SUPERFAMILY
SSF52540
2 182 181 4.18E-31
IPR027417
Pfam
PF01926
3 101 99 7.9E-11
IPR006073
SUPERFAMILY
SSF54814
157 272 116 1.4E-36
IPR009019
Gene3D
G3DSA:3.30.300.20
162 276 115 5.1E-37
IPR015946
ProSiteProfiles
PS50823
181 258 78 10.487
IPR004044
Pfam
PF07650
184 261 78 7.9E-15
IPR004044

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of
GO:0005525
Molecular function GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0120100.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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