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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0136800 |
| Transcript ID | LotjaGi4g1v0136800.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ubiquitin-like protein; TAIR: AT2G17200.1 ubiquitin family protein; Swiss-Prot: sp|Q9SII8|DSK2B_ARATH Ubiquitin domain-containing protein DSK2b; TrEMBL-Plants: tr|A0A0S3R3T1|A0A0S3R3T1_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0136800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:20059436..20065282) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGAGGTGACGGTGCCGGTGAGGAATCGAAAGGTGCCGAAGAGGTCAACATCAACGTTCGCTGCTCCAACGGTTCCAA GTTTTCAGTTCAGGTTTCCCTCAATTCCGCCGTCGGATCCTTCAAGGATCTCGTTGCTCGCAACTGCGACATCCCCGTCG AACAACAGCGCCTCATTTACAAGGGTCGGATCTTGAAGGACGATCAAACCCTTCAGAGCTACGGTAATTTCTACTTTCTC CATCTTGATGTTGTGAATTTCGTTTGTCCAGTGCGAATGAATGACTTGATACTGTTTGTTTGGTTTAGCTTTATGGTTGA ATTAAATTGGTTTTTTATGGATTGAATGACATCGTTTATTCATGAGGTTTCTGATTATTTTTACTTTAATGCGTTGTTGG TTCGACTTCAAATGTTTAGCTTATGATGGATGGATTAGGATTGTCATGTGGAATGTGCTTGTAGGAAGAAGTTTGTTTTT TGCTGTTCTTTTGGCGATTGGGATTGTTGTGGTATGTGCTCTAGATCATGAAAAGTGATAATTTTACTTCTTGCATGGCT GCATTGGTTGAAAACTTCTGTAGAAAGAAGAATAAAAAGAAAATGAAAGATGTAGGAGAAAATTGTTGCAACCTGAGACT TCTGAGAAAGAAGATAAGTGGAAAATGAACTGGAAAGAAGGTACATGGAAGAAGAGCCTAGAACTTTTGGTTTACAACTA ACATTTAAAACGAAATAGGTGTTCAGTTTATTAAGAGATACTATTGAAATGTTGGTCATCGAATCTATCAGATACTGGGA AGGAAAAGATAGCTAGCACTAAATGATATCATATAAAGAAAATTTATATAATGAAGTCCATTTAAATTGTTTAATTTACT AAAGGACTCATATTTATCAACACCTATAAATGCATTACTACTTCACTTTCAATTTTTTTGAAATTTTATGCTAAGAACAC ATTGATTAGTATGCGTAGCATACGATCTACTTAAATGGCATACACATGTGCCATATATTCGACAAAGTAATGTACCACAT AACTGGACTTGTATTGAGAAGAATTGCGTAGATGGTAACTATGTGTTTACGTCTAGTCTCTGGTTTCAATTTAAAACATA ATGCATGTCTTTCAAGTCATGACCACCTATATTTTCGAAATCATATGTAATTACACCCTATTGCAACTTTGTTTATCATT CCTTTATCAGTCCATATACAATTACTAAGTAATATATGGTAAAGCAATATTATCTGATGCTGTGATACTAGTCACCTAGC CTTTGATTGGGTTTAATTCTTTTTTCTTTTCTCAGTCATCCTCTATTTTGGCTATTGTAGCATGATTGTATTCCAGTTTT TTTCAGCATCACTGTCATATGTATTTCTATGTGGTTACCTCACTGGTAATGAACAAAGGAGGAGATGCCCTGTGTACTGT ATTTGCTCTATTCTTGAATCACTTGAACCATTGTTTACAAGAAAGCAGTTGGAGAATGCCTGCTTGTTTAACATAATTGA TTTCCCTGAATGTTTGACAATGCAACTAGGTTAACCTAATGATTAAAGTTGTTCAGCAGGATTTGGGATCATCCTTTATA GTAGAATGCTGTTTTGTAAGAAGGGCATATGCTGTGTGTTTCTATGTTTTTTCATTGGACACTTGGAATCTGTAAGGCTG GTCTAATGCATTGTAAAATATATAACATGTGTAGAGCATTGCAATAACCGAAGTCAAGTCACGGTACAACCAACATTTTA TCTGCTATTTGAAGTTAAAATTATTTTGTTGACGATTGTTGGAACTTTTTTCTAACATGGAAAATTTGAATTTGGAAGAA AAGTAGTCTTCTTTTTTCATCGTGTTCTTAGAAAGAACAGCCTAGACTTCTTCACATTAAAACTTTTGTTCTTGAAAGTT TTCCTTAATGAGTGAATATATTAAGACTTTCTTTTTATCTTCATAGGTTTGGAGGCAGATCACACTGTCCATTTGGTACG TGGCTTTGCACCTACCAATACAACTGGTGGGACCAACAGTGGTGGCACCAATACCACAACGGATAATGCTAGAGGTGCTG GTGCTAATGATGGTGGGGGTTTAGGAGGGCTTGGTTTTGGAGCTTCCCTGTTCCCTGGACTAGGTATCAATGGCACTGGG GGAAATGGCTTATTTGGTGACGGACTTCCGAATCTTGAACAAATGCAGCAACCATTTATTTCAAATCCCAATTTGGTGAG AGAAATAATGAACACACCTGCTATGCAGAATCTAATAAATAATCCTGAGATAGTGCGGAATCTTATAATGAGTAACCCAC AGATGCAAGAGCTCATGGATCGAAACCCTGAGCTAGCACACATACTTAATGACCCCAGCACTCTTCGCCAGACTCTTGAA GCTACAAGGAATCCCGAGATCATGCGTGAAATGATGAGAAATACTGACAGAGCTATGAGCAACATTGAATCTTCTCCTGA GGGATTCAACATGCTGAGGCGCATGTATGAGAATGTTCAAGAACCATTTTTAAATGCCACTACAATGGGTGGTAATGCGG GAAATAATGATACAGCAATTTCTGGGACTCAGGGTGGCCAAGTCAGGGATCAATCAACTAATCCCTCAACTGCTAATTCT GAAACAACTGGTGGTTCTCCTGTACCCAATACTAACCCGCTTCCTAATCCTTGGTCCTCTACTAGAAGTAAGTTTTGAGA CAATATTTTTTCTCTTTGTAATCCTGCGACTGGGCACCTCATTTTCTCCATTGGATTTGAACATATTTTTTCTTATTGTT ATTTATGGCTGTTTGAAGGCTAGTATTACAGCTTTGTTGCTTGTGTTGTTACTAATACTGTTGTAATTGGTGGGGAGCTT TGCAGCTGGACCTGCCCCACCAAATAATACTAGAAGATCAACTGCTGGCGGGGATGCTAGACAACAAACACCTACTGGCT TAGGAGGGCTTGGTATGCCGGACCTTGAAGGCATGTTGGGTGGCAGTGGTATGCCAGATGCTGCTTCATTGGCCCAGTTA ATGCAAAATCCAGCTATCTCACAAATGATGCAAAGTATCCTTTCCAACCCACAAACATTGAATCAGGTATCTACTTATTG TACCCAGTACAAGTACGAGATGCTTCATGCATGTGCTCAATTTCTCTTTCTAATATCCAATTTACTTTTTAGATTCTTGG GACTAATACTGAACAGCGTGGCATGCCTGATTTAAATTCTCTTAGAGAAGTGATGCGGAATCCAGAGTTCCTTCGCATGT TTTCTTCACCTGAGACAATGCAGGTAGACAAATTTGAAGTTTTGCATCTGTTGATGAGTTTTAGTTAATATCTCCGGCAT AGGGTTGAATGATGCTTGCATTAATTAGTATGTGATCTGATGCTCAAACTTTCAATTTAAAATGCTGCTACTGAAGTACA GATGTTAGCATGTACTTTCTTTGGAAGAAATTCTAATTGTTCTTAGTATGAAAAAATAATGATTATCCAGACCTAACGGG GCCAACGGCATCATCGGTCCAATGGTTGAATGAAAAACCTCCTACATAAGCAATGGGGGAGGAGGGAATTGGCTCTTTTA TTTTATTTTTTTGCAGCAGAAATTTTGATTCTTTAACATGTTATCTATCATGATAATGAAAAACTTATTGCTTGGCTATG TAATTTTTCACTTCCTTGCTTTCAATTAATATTCTCACAACTTTGTCTTATTGCACATTGACAGCAACTCATGTCTCTCC AGCAATCTCTTTTGTCTCAGCTTGGTCAGCAACAACCAACACAGTAAGTAATATTGCAATCCTGGCTCTCCTCCCACCTT GCATTTTCTTACTCATCCATGGGCAGAAACAAGAACTTCAAATGTGAAGTTGTCAATGTTTTGCTGAATCACTTAGTTAT TTGCTCAAGCCCAGTGACTAGGACACCCATTTCAACTTTCTTAGGCCTTAGATGCCTCATCTGACTTCCCATGAATGAGT AATTTTTTTGATGATTACTTCACAAAAAGGCATTTATTGTTACAGCTTCCCTGTACTGGCCTAGATCATGTGACATTATC CTTGAAAATCCAAGATGTTTTAATATTCCCATTGGCCATCATTTAAACTGGATGGGGTTTTTTGAATTTGTCCAAAGCCA GAAATAAAGATGGGCGATTAATGTGTAATGTTATTTCAAAATCCAAAATAAACGAGGTCCATTGATTCCATTGTTATGCA TAATATCATAGGTATTTGTCAGGAATAATATTCAAAGCATTCTAATTCTATATGCTTAAAATTACCATAAAGTGAAATGC AGCTGCTTTTTGAACTTGGGAATTGGATATTCTTAGTAAACAATATGGTACTTCTTGCACTCTAAGCATCAAACAAAATC TGAATACAATTGAAGGCCTCTTGGATGTGATTTTCCTGGTGGCTAAGTAGTAAGTAGTACATGGGTTGAAATCTTGATGT GGTGGATGGCATAGTCAAAGTTTTGGATGGTTGATATTAGCTTAAAATCCAGTTTGATGGTGGTTTACGTTTTGCTTCCT AATTTGTGAAATACTGTATTGATGTACTTGTTGGCTTTTTTTTTGCTTTATTTATTGTTTGTTTCTTGCTTGATTTGCTA TTAATCTGGTAAGCTTCTGCAGGGAATCAGGTCAAACTGGTGGAGGCACTGGTATGCACGATAACCCTCCATTGTCCATT CTCTTGGTTTCTGATCATTGTGTGGCTATGGAATTGCACTGGGAATTCAAATTGCTTAACCATCTGTTTAGATTACCCAT CCATACTTGAGTTATATGAAATTATGAATTATAATTTAATGAATCAGTTAAAAATTTAATGGGAGTTTCGTCTTCTACTT GTTCCTCTTCATGAAGATATTCAGATCGGCAGGGGTTAGTTGCCCTGTTTTAGTAAAAATGAGAATTTGATTGAGTTGTT TGAATACCTTTACACTCAGATTTTGTTGGGTGGTTTGTAAATTATAGAACTGGGTATGGGTGAGCTTGACCAAAAGGCAC TGCCTGCGATCCTTTGAAACCAAATTTAAGATTGTTCTTATGAAATCATAAGACCCATTAATTCATGTGCTATCTTTAGA AGGGTAACATGCATTTAACAAATCTTTTTGCCTGATTCATTCTGTAGCAATGAAAGGGGGAACTTTTAAGTTTGGTGGTG GCTATTTGGGATGCGACTTCCTTTTGATAGGAAACAGATTTGTAACATTTCTTTGAAATTACTTCCACATCTTTTTATTG GCAGGACCATTGAACAACTTGGGGTTGGAGATGTTATCGAGCATGTTTGGTGGACTTGGAGCTGGTAGTCTAGCTGTTCC AAATAGATCAAATGGTAAGCATTATTGTTGTCTTCTACTTCTCTCTATGAATTTTAAATTATACTAACTAAACTGTAGCT CTTATACTAAAAGGTTCCTGTTTAAAAACAATTACTGTGGGGACCAAAAATGTAATTTGGTACCTCTAATTTATATACTG TGATTTGACTCACCAGTGTAGATTTTTACCCAATCGGATAATTTTCAAACTCTAGATCCAATTATGAACTTTCAATACTT ATATGTATCTAATGAATAATCCAAAAATATGGGAACTACATATGAATATGAATTTAACCTAGATTTTATGCTGCTCATTG ATTTTGTTGTCGTCTCAGAGGCCCCGGAGCAATTGTATGCCACCCAGCTTTCACAGCTTCAAGAGATGGGGTTTTTTGAC ACTCAAGAGAACATAAGGGCACTTATTGCTACATCAGGGAATGTTCATGCAGCAGTTGAACGGCTTTTGGGAAACTCTGG TCAGTAA
CDS sequence (LotjaGi4g1v0136800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAGGTGACGGTGCCGGTGAGGAATCGAAAGGTGCCGAAGAGGTCAACATCAACGTTCGCTGCTCCAACGGTTCCAA GTTTTCAGTTCAGGTTTCCCTCAATTCCGCCGTCGGATCCTTCAAGGATCTCGTTGCTCGCAACTGCGACATCCCCGTCG AACAACAGCGCCTCATTTACAAGGGTCGGATCTTGAAGGACGATCAAACCCTTCAGAGCTACGGTTTGGAGGCAGATCAC ACTGTCCATTTGGTACGTGGCTTTGCACCTACCAATACAACTGGTGGGACCAACAGTGGTGGCACCAATACCACAACGGA TAATGCTAGAGGTGCTGGTGCTAATGATGGTGGGGGTTTAGGAGGGCTTGGTTTTGGAGCTTCCCTGTTCCCTGGACTAG GTATCAATGGCACTGGGGGAAATGGCTTATTTGGTGACGGACTTCCGAATCTTGAACAAATGCAGCAACCATTTATTTCA AATCCCAATTTGGTGAGAGAAATAATGAACACACCTGCTATGCAGAATCTAATAAATAATCCTGAGATAGTGCGGAATCT TATAATGAGTAACCCACAGATGCAAGAGCTCATGGATCGAAACCCTGAGCTAGCACACATACTTAATGACCCCAGCACTC TTCGCCAGACTCTTGAAGCTACAAGGAATCCCGAGATCATGCGTGAAATGATGAGAAATACTGACAGAGCTATGAGCAAC ATTGAATCTTCTCCTGAGGGATTCAACATGCTGAGGCGCATGTATGAGAATGTTCAAGAACCATTTTTAAATGCCACTAC AATGGGTGGTAATGCGGGAAATAATGATACAGCAATTTCTGGGACTCAGGGTGGCCAAGTCAGGGATCAATCAACTAATC CCTCAACTGCTAATTCTGAAACAACTGGTGGTTCTCCTGTACCCAATACTAACCCGCTTCCTAATCCTTGGTCCTCTACT AGAACTGGACCTGCCCCACCAAATAATACTAGAAGATCAACTGCTGGCGGGGATGCTAGACAACAAACACCTACTGGCTT AGGAGGGCTTGGTATGCCGGACCTTGAAGGCATGTTGGGTGGCAGTGGTATGCCAGATGCTGCTTCATTGGCCCAGTTAA TGCAAAATCCAGCTATCTCACAAATGATGCAAAGTATCCTTTCCAACCCACAAACATTGAATCAGATTCTTGGGACTAAT ACTGAACAGCGTGGCATGCCTGATTTAAATTCTCTTAGAGAAGTGATGCGGAATCCAGAGTTCCTTCGCATGTTTTCTTC ACCTGAGACAATGCAGCAACTCATGTCTCTCCAGCAATCTCTTTTGTCTCAGCTTGGTCAGCAACAACCAACACAGGAAT CAGGTCAAACTGGTGGAGGCACTGAGGCCCCGGAGCAATTGTATGCCACCCAGCTTTCACAGCTTCAAGAGATGGGGTTT TTTGACACTCAAGAGAACATAAGGGCACTTATTGCTACATCAGGGAATGTTCATGCAGCAGTTGAACGGCTTTTGGGAAA CTCTGGTCAGTAA
Protein sequence (LotjaGi4g1v0136800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGGDGAGEESKGAEEVNINVRCSNGSKFSVQVSLNSAVGSFKDLVARNCDIPVEQQRLIYKGRILKDDQTLQSYGLEADH TVHLVRGFAPTNTTGGTNSGGTNTTTDNARGAGANDGGGLGGLGFGASLFPGLGINGTGGNGLFGDGLPNLEQMQQPFIS NPNLVREIMNTPAMQNLINNPEIVRNLIMSNPQMQELMDRNPELAHILNDPSTLRQTLEATRNPEIMREMMRNTDRAMSN IESSPEGFNMLRRMYENVQEPFLNATTMGGNAGNNDTAISGTQGGQVRDQSTNPSTANSETTGGSPVPNTNPLPNPWSST RTGPAPPNNTRRSTAGGDARQQTPTGLGGLGMPDLEGMLGGSGMPDAASLAQLMQNPAISQMMQSILSNPQTLNQILGTN TEQRGMPDLNSLREVMRNPEFLRMFSSPETMQQLMSLQQSLLSQLGQQQPTQESGQTGGGTEAPEQLYATQLSQLQEMGF FDTQENIRALIATSGNVHAAVERLLGNSGQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 3 | 86 | 84 | 5.1E-22 | – | |
| PANTHER | 8 | 508 | 501 | 1.2E-224 | ||
| SUPERFAMILY | 8 | 102 | 95 | 3.02E-24 | ||
| PANTHER | 8 | 508 | 501 | 1.2E-224 | – | |
| SMART | 16 | 87 | 72 | 6.0E-19 | ||
| ProSiteProfiles | 16 | 85 | 70 | 21.045 | ||
| CDD | 16 | 88 | 73 | 3.46175E-36 | – | |
| Pfam | 18 | 85 | 68 | 1.3E-20 | ||
| SMART | 141 | 178 | 38 | 6.7 | ||
| SMART | 191 | 230 | 40 | 1.6E-9 | ||
| MobiDBLite | 265 | 341 | 77 | - | – | |
| MobiDBLite | 265 | 363 | 99 | - | – | |
| SMART | 343 | 396 | 54 | 0.025 | ||
| SMART | 399 | 434 | 36 | 1.6 | ||
| MobiDBLite | 441 | 463 | 23 | - | – | |
| Gene3D | 452 | 510 | 59 | 1.6E-21 | – | |
| ProSiteProfiles | 462 | 507 | 46 | 12.74 | ||
| SUPERFAMILY | 464 | 506 | 43 | 1.89E-14 | ||
| CDD | 468 | 506 | 39 | 4.67661E-18 | – | |
| Pfam | 468 | 504 | 37 | 1.9E-9 | ||
| SMART | 468 | 506 | 39 | 1.1E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0136800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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