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LotjaGi4g1v0242000.1

Overview

Field Value
Gene ID LotjaGi4g1v0242000
Transcript ID LotjaGi4g1v0242000.1
Lotus japonicus genome version Gifu v1.2
Description Pentatricopeptide repeat-containing protein, putative; TAIR: AT1G74850.1 plastid transcriptionally active 2; Swiss-Prot: sp|Q9S7Q2|PP124_ARATH Pentatricopeptide repeat-containing protein At1g74850, chloroplastic; TrEMBL-Plants: tr|K7MKT2|K7MKT2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0242000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:59017277..59022978) extracted from Lotus japonicus Gifu genome v1.2.

CCCACCCCGCACCCGTCAATGTATTTCCCGGGTCAAATAAATAACCCGATTTCCTTTTCCAGTTTCCACTTTCATTCTTC CCTCCCCAAACGACCGTTATCCACAACACACGTGGCCTTTCCTCAACTCAGTTCCCTCCTCCTCCTCCTTCTTCTTCTTC CTTCTTCCACCAGCGAACCACCACAACAAACTCGATTCAGTTCAACCCAACGATGCGTAACCGTTTTCTGAGCTTCTGAA ACCGCCGCGAACGCACCGATTCAATGACCCTCTTGCTCTCACCCCCTTCTGCTCTCACCTTCACCAAACTCTTCTTCCCG AGCTCGAACTCCACAACCCAATGGAGGTTCCAGTTCCGATTCCAAGCCCGCGCGAAGACCAAGGAGCTCGTCCTCGGAAA CCCCTCGGTCACCGTCGAGAAAGGAAAGTACACCTACGACGTCGAAACCCTAATCAACAAGCTCAGCAGCCTCCCGCCAC GTGGCAGCATCGCCCGGTGTCTCGACTCCTTCAAGAGCAAGCTCTCCCTCAACGACTTCGCCGTCGTGTTTAAGGAGTTC GCGCAGCGCGGTGATTGGCAGCGCTCGCTCCGGTTGTTCAAGTATATGCAGAGGCAGATATGGTGCAAGCCTAATGAGCA TATATACACTATCATGATGACGCTTTTGGGGAGGGAAGGGTTGTTGGATAAGTGCCGCGAGGTGTTCGATGAAATGCCTA GCCAAGGGGTTCCGCGCAGCGTGTTTGCTTACACCGCGATTATCAATGCATATGGCCGGAATGGTCAGTTTAACGCGTCG CTTGAGCTTCTTGATAGGATGAAGAAGGAGAGGGTTTCACCGAGTATTTTGACTTATAACACTGTGATTAATGCTTGTGC TAGGGGTGGGTTGGATTGGGAAGGGTTGTTGGGGTTGTTTGCTGAGATGAGGCATGAAGGGATACAGCCTGATGTGGTAA CTTATAACACGTTGCTCAGCGCGTGTGCTCATAGGGGGTTAGGCGATGAAGCTGAAATGGTGTTTAGGACCATGAATGAA GGTGGGGTTGTTCCTGATATTAATACTTATAGTTATCTTGTTCACACGTTTGGTAAGTTGAATAGACTTGAGAAGGTTTC GGAGCTTCTTAGGGGAATGGAGTCAGGGGGTAGTTTGCCGGATGTTAGCTCTTATAATGTGCTGTTGGAAGCTTATGCGG GTTTAGGGTCCATCAAAGAGGCGATTGGCGTGTTTCGGCAGATGCAGGCGGCGGGGTGTGTGCCGAATGCAGCCACGTAT AGTATTCTGTTGAATTTGCATGGGAAGCATGGGAGGTATGATGATGTTCGCGATCTTTTTCTTGAAATGAAGGTGAGCAA CACTGACCCTAATGCCGGTACTTATAACATTCTCATACAGGTCTTTGGGGAAGGTGGATACTTTAAGGAGGTGGTCACTT TATTTCATGACATGGTGGAAGAAAACATTGAGCCAAACATGGAGACTTATGAGGGTTTGATATTTGCTTGTGGGAAGGGA GGGCTGTATGAAGATGCCAAGAAAATTTTACTCCACATGAATGAGAAGGGAATAGTGCCAAGTTCCAAGGCTTATACTGG GGTAATTGAAGCATATGGGCAGGCTTCACTGTATGAAGAGGCTCTAGTTGCGTTTAACACTATGTTTGAAGTGGGAAGCG ACCCGACAGTTGAGACCTACAATTCACTCGTTCATGCATTTGCAAGGGGGGGATTATACAAAGAAATGGAAGCAATTTTA TTCCGGATGGGCGAGTCTGATTTACAACGGGATGTGCATTCATTCAATGGTGTGATTGAAGCTTATAGGCAAGGAGGTCG GTATGAAGAGGCTGTAAAAACTTATGTTGAGATGGGAAACTCAAACTGTGATCCTAATGAGCTGACGCTTGAAGCAGCAT TGAGCGTATACTGCTCTGCAGGTCTTGTTGATGAGAGTGAGGATCAGTTCCAAGAAATTAAAGCTTCAGGGATACTGCCT AGTGTTATGTGCTACTGCATGATGCTGGCTCTTTATGCAAAGAGTGATAGGTCAGCTCTCTTTAGTTCGTGTTGCTGTGT TTTGGTGATATTTTAAAATCATTGCAGTGCTACTTTCTAATGTGGTCCAGGTCAAGGAGTTTTTGGCTCATTATCCGCAT TCAAACATGACTAGTTTTTGTTATTTTTTGAACAAAGAAATATTGCATAAGTTCATGTGACCAACACTTGTGCAGTTAAC AGCATAATTAGGTTATTGGATAATTACAAGCTTAGCTAAATTATTAGTTTTGGTCTTGACTCTTGACATTCCATGTGACT TTCTAATGTGGTTCATTTATTTTTCTCACAATCTTATTTAGATTTATGTAGTATTGCACAATTTTTTAGTAACCACTTCG TCCTTTATTCTTCTACCTCTACAATGAACTTTTTTTGCTGTTATTCCCAGCAAACTCTGAAAAAAAAAATACATCTATAT GTTAGGATCAGGATCCTCTCATGTTGAAATTTCTTGTCTATTTACCTCTTCATGTGTATTAAGTGGTTGGGGCCCTTTAT ATATTTGTATTTCATGTCTCCTCCTTCATTTCTCCAAGGAGGTCAGAATTTTCCTTCATCACTTCTGGTGACCATGAATC TAGTCTTTCCACATTCAATGCCCACTGCTCCAAGATCTGAGCTCTGGCACCAATTTTAGGAGAAGAACAGAAACTGATTT TATGAAAAAAACAATGAAACTACAAGGGTTAATTGGTATTCGAGAGATCAGCTCTCTTCCTAAATGACCTTGATTACAAT TCAGATACACTCTCTTTTTCCTCCTTTCTCCTATTTATAACCTATCACCTCCTACTTTCTTATTATCTCCCCCTGGCTTA GCAGGAGGGATTGGATTTTGAACCCCTTTAGTAACTATCTATCTAACAAACTAATATAGGGATTTCCTTAACTAACTAAG GGGTTGCTATCTATTAGGAATTCTCATGCATTTGTTCTATTGGTGCTGTGTTTGTGTAAATAATCTTATTCTGCTAAGTA TTAAAGAGCTTCATGTAGAACAGTAGATATATTATTTGTAATCAAGCTTGCTATTGATACATGTTATGACATTTTCTAGT GTGCTTGTATTAATTGAATGAGTAATGTGTGACTCTATTTATATTGAAATTTGAAATTTCCTTAGAGGCTTAGCTCAATT GTTTCAAGTTCTTTTGGCTGCTACTTGATCACAGAATCTAATCCCACTCCAGTTGTTTTACCATCATGTTAGCCTGTCTC CCAACACTTCCTCCTATTAACCAGAGTATGAGTAAATAAAATCAAGTATAGATGTCAATCTTAATTGGAGGTCTAACGAA ACAAAAATGATCCGTGATTGATATTTTAACAACTTCTGCCAAATTAGTGTGCTGATTACTATCATGTTTAGTAACCCATC TCACTATATTTAAATGGGGGCCTTCTTTTTTCTTCAATTTGCTATCTGATGCTTGTTTAAGGTAAAGTCAAACTCTGTGT GGACCTTTGTTTAAACTTTTATCACCTATTAATTGCTTTTCTTTTGATGCTTTATTTATGTTTTATACCTGAGATTAAAT CTCTTATTGGTATCAGGTCGAATGATGCCTATAATCTAATTGATGAGATGATCACGATAAGGGTGTCAGATATTCATCAA GTGATAGGGCAAATGATCAAGGGAGATTTTGATGATGAGTCTAATTGGCAGATTGTGGAGTATGTCTTTGACAAACTCAA TTCTGAAGGATGTGGATATGGAATGAGATTCTACAATGCACTGTTAGAAGCTCTTTGGTGGATGTACCAGAGAGAAAGGG CTGCAAGAGTTCTCAATGAAGCATTAAAGAGAGGGCTTTTCCCAGAACTTTTTCGTAAAAATAAACTTGTGTGGTCTGTG GATGTCCACAGGTATAGTAGCAATCAATGCTTTGTAAACTTGTATTGTTCCTTAATAAGGGAAAAATATACAAAGCCCCC CACTATTGGGGCATTTAGAATTAGAACCTTCAACTTTCAATTCAGGCAATTAACCTCTTTAATTTCAGAAAAGGTCTCCA TAACTAACTTACATTCATGTCGAATAATTGATTTTGGAGATTTTAGTTCCTAATCATGAATTCCCCTTAGGAATATATGG ATAAATTGGTAGGTTAAGAAATTTAAATGCCAGAATGATAGTGCAGATGAAATGGATAACATATTGGATAAATGTGACTA CTGAAACCTTTAAAAATTTTAAAGGGGGAAAATTACTGAAATTGAAAGTTGAGTTGTCTTTTTTTCTTAGCCTCCAAATG AGGAGGTTCTATGCATTTTTATCTTTGATGAATTATATGAAACCTAAAGTTTGGTTGTCTTGCAGGATGTCGGAAGGTGG TGCATTAACCGCGCTATCAATTTGGCTGAACAATATGCAGGAGATGTTCATGACTGGCGAGGATCTTCCTGAGCTTGCAT CAGTTGTTGTGGTGTAAGTTGCTTTAAAAACTATTCATTTATTCCTTTTGTGTGTACCACCTTGGACTGAGTCTGAAGCC ATTCATGTTAGAGTAAAGGTGTAAAAATCGTGCATTTATAGGTTTGCATCTGATCCACCTTGGTTATGAAGAGGTGGAAA TTGCATTGGCATGCTTTCTTTTTTATTGAAAAAAAAGGAATTATCCATTACTTTATTTAAATAACCTTTTAGAGCTTTTC TAACTTTGATATATTTTCGATTCAACCAGTCGGGGTGAAATGGAGAAAAGCGCAAATACCCAAGATTTCCCTATCGCAAA GGCTGCCTTTACATTCCTGCAGGATAATCTCTCATCCTCCTTCACTTTTCCTGGATGGAACAAAGGTCGCATTGTTTGTC AGCAGTCACAACTAAGGCGAATGCTTTCGGGCACAGGATCATCTTCAAGTTCGAAAAAAATGGATCCATTAGTATCTTTA AGTAATACCACTTTGACTGATGCAGGAGCTATGTCATCTAAATCTGATGTGCAAAGTGGTAAAGCTAATGATGTTGATTC TAGAACCGATAGAACAAGAACAGAGCTTCTAACTAGTTCAGTTTAGATTAGAGCAATATAGGAAATCTTATTCTTCACTT CCCTATGCCCTGTTTTGGTTGATTTGAAATTAAGATTAGGGCACTGTACTATTTGTTAGACTAATAATGTTCAAAGTGGG CTGGCATTCTGGTCTCCAAAATTTTGGTAAATATGTTCTCAAGGTATCTGAAGAAAGCTCAATTGGCCATTGGCACCAAT GTTTACCTGTGCATTTGATTCCTGATTCTGCATAGGATACACCATAAAAACAATAAACATGTTTCTTTTGATCTTTATTC ATAAATGTTAATTTGCTGATAGTTCTTACTTTTGGACACTTTCTGATCACATTTGACAGATACAAAACAAATTATTATTG TACTACGTTGAGAGTACATAAAAAACCTGCCACCACTTTGCAGTTCCAACTCCATGGTCGAAATGCAAGTTTGTGGTGAC CAGAAAATCACAATGAGCTCATTGCTCACCCCCTTGCTTTGCTTGGTAGTCTGCGCATAAGTTCTTTGTCTGTCTCATGA TAGAAATAAATTTAATTTAAATGGGGACTATCTTGCAAAACAAGGCCGTGAGCAAGATGAGTCTGGTTCTTCAACCTCTG GTCACTCGTATTTCATTTTTCG 

CDS sequence (LotjaGi4g1v0242000.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGACCCTCTTGCTCTCACCCCCTTCTGCTCTCACCTTCACCAAACTCTTCTTCCCGAGCTCGAACTCCACAACCCAATG GAGGTTCCAGTTCCGATTCCAAGCCCGCGCGAAGACCAAGGAGCTCGTCCTCGGAAACCCCTCGGTCACCGTCGAGAAAG GAAAGTACACCTACGACGTCGAAACCCTAATCAACAAGCTCAGCAGCCTCCCGCCACGTGGCAGCATCGCCCGGTGTCTC GACTCCTTCAAGAGCAAGCTCTCCCTCAACGACTTCGCCGTCGTGTTTAAGGAGTTCGCGCAGCGCGGTGATTGGCAGCG CTCGCTCCGGTTGTTCAAGTATATGCAGAGGCAGATATGGTGCAAGCCTAATGAGCATATATACACTATCATGATGACGC TTTTGGGGAGGGAAGGGTTGTTGGATAAGTGCCGCGAGGTGTTCGATGAAATGCCTAGCCAAGGGGTTCCGCGCAGCGTG TTTGCTTACACCGCGATTATCAATGCATATGGCCGGAATGGTCAGTTTAACGCGTCGCTTGAGCTTCTTGATAGGATGAA GAAGGAGAGGGTTTCACCGAGTATTTTGACTTATAACACTGTGATTAATGCTTGTGCTAGGGGTGGGTTGGATTGGGAAG GGTTGTTGGGGTTGTTTGCTGAGATGAGGCATGAAGGGATACAGCCTGATGTGGTAACTTATAACACGTTGCTCAGCGCG TGTGCTCATAGGGGGTTAGGCGATGAAGCTGAAATGGTGTTTAGGACCATGAATGAAGGTGGGGTTGTTCCTGATATTAA TACTTATAGTTATCTTGTTCACACGTTTGGTAAGTTGAATAGACTTGAGAAGGTTTCGGAGCTTCTTAGGGGAATGGAGT CAGGGGGTAGTTTGCCGGATGTTAGCTCTTATAATGTGCTGTTGGAAGCTTATGCGGGTTTAGGGTCCATCAAAGAGGCG ATTGGCGTGTTTCGGCAGATGCAGGCGGCGGGGTGTGTGCCGAATGCAGCCACGTATAGTATTCTGTTGAATTTGCATGG GAAGCATGGGAGGTATGATGATGTTCGCGATCTTTTTCTTGAAATGAAGGTGAGCAACACTGACCCTAATGCCGGTACTT ATAACATTCTCATACAGGTCTTTGGGGAAGGTGGATACTTTAAGGAGGTGGTCACTTTATTTCATGACATGGTGGAAGAA AACATTGAGCCAAACATGGAGACTTATGAGGGTTTGATATTTGCTTGTGGGAAGGGAGGGCTGTATGAAGATGCCAAGAA AATTTTACTCCACATGAATGAGAAGGGAATAGTGCCAAGTTCCAAGGCTTATACTGGGGTAATTGAAGCATATGGGCAGG CTTCACTGTATGAAGAGGCTCTAGTTGCGTTTAACACTATGTTTGAAGTGGGAAGCGACCCGACAGTTGAGACCTACAAT TCACTCGTTCATGCATTTGCAAGGGGGGGATTATACAAAGAAATGGAAGCAATTTTATTCCGGATGGGCGAGTCTGATTT ACAACGGGATGTGCATTCATTCAATGGTGTGATTGAAGCTTATAGGCAAGGAGGTCGGTATGAAGAGGCTGTAAAAACTT ATGTTGAGATGGGAAACTCAAACTGTGATCCTAATGAGCTGACGCTTGAAGCAGCATTGAGCGTATACTGCTCTGCAGGT CTTGTTGATGAGAGTGAGGATCAGTTCCAAGAAATTAAAGCTTCAGGGATACTGCCTAGTGTTATGTGCTACTGCATGAT GCTGGCTCTTTATGCAAAGAGTGATAGGTCGAATGATGCCTATAATCTAATTGATGAGATGATCACGATAAGGGTGTCAG ATATTCATCAAGTGATAGGGCAAATGATCAAGGGAGATTTTGATGATGAGTCTAATTGGCAGATTGTGGAGTATGTCTTT GACAAACTCAATTCTGAAGGATGTGGATATGGAATGAGATTCTACAATGCACTGTTAGAAGCTCTTTGGTGGATGTACCA GAGAGAAAGGGCTGCAAGAGTTCTCAATGAAGCATTAAAGAGAGGGCTTTTCCCAGAACTTTTTCGTAAAAATAAACTTG TGTGGTCTGTGGATGTCCACAGGATGTCGGAAGGTGGTGCATTAACCGCGCTATCAATTTGGCTGAACAATATGCAGGAG ATGTTCATGACTGGCGAGGATCTTCCTGAGCTTGCATCAGTTGTTGTGGTTCGGGGTGAAATGGAGAAAAGCGCAAATAC CCAAGATTTCCCTATCGCAAAGGCTGCCTTTACATTCCTGCAGGATAATCTCTCATCCTCCTTCACTTTTCCTGGATGGA ACAAAGGTCGCATTGTTTGTCAGCAGTCACAACTAAGGCGAATGCTTTCGGGCACAGGATCATCTTCAAGTTCGAAAAAA ATGGATCCATTAGTATCTTTAAGTAATACCACTTTGACTGATGCAGGAGCTATGTCATCTAAATCTGATGTGCAAAGTGG TAAAGCTAATGATGTTGATTCTAGAACCGATAGAACAAGAACAGAGCTTCTAACTAGTTCAGTTTAG 

Protein sequence (LotjaGi4g1v0242000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MTLLLSPPSALTFTKLFFPSSNSTTQWRFQFRFQARAKTKELVLGNPSVTVEKGKYTYDVETLINKLSSLPPRGSIARCL DSFKSKLSLNDFAVVFKEFAQRGDWQRSLRLFKYMQRQIWCKPNEHIYTIMMTLLGREGLLDKCREVFDEMPSQGVPRSV FAYTAIINAYGRNGQFNASLELLDRMKKERVSPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDVVTYNTLLSA CAHRGLGDEAEMVFRTMNEGGVVPDINTYSYLVHTFGKLNRLEKVSELLRGMESGGSLPDVSSYNVLLEAYAGLGSIKEA IGVFRQMQAAGCVPNAATYSILLNLHGKHGRYDDVRDLFLEMKVSNTDPNAGTYNILIQVFGEGGYFKEVVTLFHDMVEE NIEPNMETYEGLIFACGKGGLYEDAKKILLHMNEKGIVPSSKAYTGVIEAYGQASLYEEALVAFNTMFEVGSDPTVETYN SLVHAFARGGLYKEMEAILFRMGESDLQRDVHSFNGVIEAYRQGGRYEEAVKTYVEMGNSNCDPNELTLEAALSVYCSAG LVDESEDQFQEIKASGILPSVMCYCMMLALYAKSDRSNDAYNLIDEMITIRVSDIHQVIGQMIKGDFDDESNWQIVEYVF DKLNSEGCGYGMRFYNALLEALWWMYQRERAARVLNEALKRGLFPELFRKNKLVWSVDVHRMSEGGALTALSIWLNNMQE MFMTGEDLPELASVVVVRGEMEKSANTQDFPIAKAAFTFLQDNLSSSFTFPGWNKGRIVCQQSQLRRMLSGTGSSSSSKK MDPLVSLSNTTLTDAGAMSSKSDVQSGKANDVDSRTDRTRTELLTSSV 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SignalP_GRAM_POSITIVE 1 12 12 -
Gene3D 68 210 143 1.6E-36
ProSiteProfiles 88 118 31 6.752
PANTHER 91 209 119 6.7E-158
ProSiteProfiles 124 158 35 10.578
TIGRFAM 127 158 32 1.4E-6
PANTHER 133 343 211 6.7E-158
Pfam 147 205 59 7.6E-14
ProSiteProfiles 159 193 35 11.981
TIGRFAM 162 194 33 1.1E-7
ProSiteProfiles 194 229 36 11.772
TIGRFAM 197 231 35 1.6E-5
Gene3D 211 295 85 3.8E-19
Pfam 218 278 61 1.2E-13
ProSiteProfiles 230 264 35 12.671
TIGRFAM 232 266 35 1.0E-7
ProSiteProfiles 265 299 35 9.646
TIGRFAM 268 301 34 7.0E-4
Gene3D 296 435 140 2.3E-34
PANTHER 298 489 192 6.7E-158
Pfam 299 344 46 4.6E-12
ProSiteProfiles 300 334 35 12.573
TIGRFAM 303 336 34 1.3E-8
ProSiteProfiles 335 369 35 10.775
TIGRFAM 338 370 33 2.6E-6
Pfam 369 416 48 1.1E-9
ProSiteProfiles 370 404 35 11.246
TIGRFAM 373 405 33 1.2E-7
ProSiteProfiles 405 439 35 10.72
TIGRFAM 408 440 33 1.3E-4
PANTHER 425 546 122 6.7E-158
ProSiteProfiles 440 474 35 8.901
Pfam 443 471 29 0.068
Gene3D 448 633 186 6.9E-35
ProSiteProfiles 475 509 35 9.558
TIGRFAM 478 510 33 2.9E-4
Pfam 478 505 28 5.4E-4
ProSiteProfiles 510 544 35 11.027
Pfam 510 557 48 1.9E-7
TIGRFAM 513 546 34 1.6E-5
PANTHER 542 694 153 6.7E-158
ProSiteProfiles 545 579 35 9.657
ProSiteProfiles 580 614 35 7.509
Pfam 583 609 27 0.28
ProSiteProfiles 651 685 35 7.191
SMART 694 783 90 1.7E-6
ProSiteProfiles 697 786 90 11.97
MobiDBLite 811 848 38 -
MobiDBLite 811 827 17 -

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0242000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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