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LotjaGi4g1v0247900.2

Overview

Field Value
Gene ID LotjaGi4g1v0247900
Transcript ID LotjaGi4g1v0247900.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description ATP-binding cassette transporter subfamily A member; TAIR: AT3G47780.1 ABC2 homolog 6; Swiss-Prot: sp|Q9STT5|AB7A_ARATH ABC transporter A family member 7; TrEMBL-Plants: tr|A0A072UQI5|A0A072UQI5_MEDTR ABC transporter A family protein; Found in the gene: LotjaGi4g1v0247900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:59969277..59973092) extracted from Lotus japonicus Gifu genome v1.2.

ATGGAGTTGTATCCTGGATTTGCTTTATATCGTGGGTTATATGAGTTTGCACAATTTTCCACGAATGGGAGTAATATGGG GACTGATGGTATGCGGTGGCGGGATCTAAGTGATGGCACCAATGGCATGAAAGAGGTCTTAATTATCATGTTGGCTGAGT GGGTAGTAGTGCTCTTTGCTGCTTATTACATCGATCAAGTATCGTCATCAGGAAGCGGAAAAGGTCCTCTTTTCTTCTTG AAAGGATTTCAAAGAAAACCTCCATCATTTCAGAAGCCTAGTGTCCAAATGCAGGGGTCTAAAGTTTTGACCCAGAATGA GAAACCTGATGTCATCCAAGAAGTAAATTTTACTTATATTGAATATATTCCCTCATACTATGTGCTAATCTCTACGGGAT TAAGAAATTAAGAAAACTAATGTCTGCCAATAGGTGCATTTCACCTGCTGGTGTTATAAGTTAATGTAATGATGTTGCCG CCTCTTTGAGTAATGGTGTGATACACAATACTCAATAACTACAATTAGTTATGGATTCCATTAGAACCAAATAAATGTCC CTTCAGTCCCAATCTCATCCTCCCTCCTCCCTTTTCAAACTTCATTATTGCATTGAAAGACCCCGTGTAAGTTTTTTGTA AGTTTTATTATTCTAAATATATTGTTGCTTAATTACATGCATAATGTGTTAAATGTTTTCTTCTTTTTCTCTTCAGATGG AAAAGGTGGAGCAGCTCCAACTTGAACCAACTATTAGTCATGCAATTGTATGTGATAACCTACAAAAAGTCTATCCAGGG AGGGATGGAAATCCAGACAAAGTTGCAGTGAGAGGGTTGTTTCTTGCTGTGCCTCAAGGGGAATGCTTTGGTATGCTTGG TCCCAATGGTGCTGGGAAGACTTCTTTTATCAGTATGGTCAGTTAAAAAAGTTTAAGTTACTTGCACATCCCCCCGTCCC CATCCAAGAAAGTTTAACAAGGGTCCATTCAGTTGCTTGAGCTCACAAGAGAAGAAATAAGTTTTAAAATAACTTTTTAA GTCTATCTTTTCTTAACCTAAACAGATCACATGATAAATAGACCTAATCTTTTCATTTTAGTTTTTCAATTGAAAAATAG TCAACATGTTGGTGACTTCTTTTTTGGAAAATTACATGCACACCCCCGGTCCCCATCCAAGAAAGTTTAATAACTGTCCA TTCAGTTGCTTGAGCTCACAAGAGAAGAAATAAGTTTTAAAATACCTTTATAAGTCTATCTTTTCTTAATGAAATAAAGA GATGCTTGGTGACTTGGCCCGCCCATATATGAGTGGACCTCTGATGGGTTCATTTCAGCATGTTACGCGATTCTTCTTAG ATACCATGTTTCATGTTTATTTCTTTGAATGGTTTTCTCCTTAATTCCTGATTCCAATCAGCGTACATATTCTCATAGAT GATTGGTCTTACAAAGCCAACCTCTGGTACGGCATCTGTTCACGGCCTTGACATAAGAACTCATATGGAAGGAATATATA CTAGCATGGGGGTATGCCCACAGCATGAGTAAGCTAGAATTTTGTCCAATTTTAATGTTTTGTCTAATTTATAACAGTTG AAACGCTTTTAACTCTTTTTCTCTTGAATTTGTAGCTTACTTTGGGAAAGCTTGACAGGCAGAGAGCACCTACTTTTTTA TGGCAGACTTAAAAATCTTAAAGGTTTGGTCTTGACACAAGTAAGTTAATTTGAGAGGAGTTGACTGTTGAAATTTTAAT ATTATTATTATTGTGTTAGGGACTTAGGGGTCTTATCATGTTTGGAGTGTTAAGATGTACTACTGTTGTAATCTCCAAAT ATTAGTTAGAGCAATGGATCTTTGCTTTGCCAGTCCATGCCATCATTCTAGATTTTCCCTTCAAACTTGTTTGGTGAAGT TTTATTCAAGGACCTAAGCTTTTTATGATAAACCAATCAAGGGACTAGATTTCAATTATTACCAATTAAGAATCTCAATT TTATTAGAAAGCTGCGGAAAAGACAAAAGTATCCAACATGAAAAATGAAGAAAAAAAAAACCTGAACAGAACACATGATA TATAGACCTAACCTTTTCATTTTAGTTTGTCAATTAAAAATAGTCAACTTATGTTTTAGTTTAATTAGTTATCAGTATCA CATTGAAGTTGAGATTTTTAAATATTACAGTAAAGTTAGGGTGCTTATGCAACATGTTTCTCAACAAGTATTTATTGCTT CTTTGTTTAGCCTATTACAGTGTCGATGCAATTTGAATAACTTTCTTTTTAGCATTTATTTGGCTGGGAAGACTTGATTT AACAGCTTCGAATCTACCTCTGCAGGCAGTAGAAGAATCTTTGAAGAGTTTAAACCTTTTCCATGGAGGGGTTGCTGATA AACAAGCTGGCAAATACAGTGGAGGGATGAAGAGGAGGCTTAGTGTCGCAATTTCATTGATTGGGGATCCCAGAGTATGT TTTTTTTTTTCAATCCAGTATATATATATATATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA GAGAGAGAGAGAGAGAGGGTTCAAGTTGTCTTATTTATAAGTGTTAAAATTGTTGTTTAGGTTGTTTATATGGATGAGCC AAGTACCGGGTTAGACCCTGCTTCAAGGAAAAGCTTATGGAATGTTGTTAAGCTTGCAAAACGGGACCGTGCGATCATCC TGACCAGTATTCTCTCACTCCTTCATGGATTTTGAAGCACATTATTCTGCTTGTTTACATGCTTTAGATATATTAAGCTT ATTTATATATTTGGTTACATAACAGCATGAAGGTGTTCTGATTCTCTTTCTCTACCTATAGATTGATAAATCTTGCTTTT ATGCTTTCAGCACATTCCATGGAAGAGGCAGAGGCCTTATGTGATCGGTTAGGAATTTTTGTAAATGGTAGCTTGCAGTG TGTAGGAAATGCAAAGGAGGTAACATTACTCAAGTGATATGCTTTATCAAATTCTATTGCAAATTTGGGTAGCAAATGGC TACAGCCTACAAAACTTTAGATTGTAACAAAACCTTTTATTTGTCCTAATATGGTTAGGAATTGCTTGCTTTTGTGCCTT ACAAACTTGCTATTTACACCCCCCTTTTTAAAAAAAAAAATACCCCATGAGTAAAAAAATAGGTAAGAATTGCTAGGGAT TTGTAAATAGCAATTTTGGGTATGCAAAAAGTATCACGTCTTAGTGGATCTGGCTTTGGATGCACATCTTAGTGCATGTT TGAAATCATTTCTGTAATTGATTTCATAGTCATAATCAGTTTTAGGAAGAAGCTTCTTTGTGCCTGAATTGATTTTGTCA AAAAATAAGCTGATCTCAACATGCTATAAAAATTACACTTCCACTGTTTTTTAATTGCTGCTGAATAGAGATTGTAGACT CGATGTAACAAAAAAAAAGGCAAATGTAAACTCAAACCATGTTGATTCTTAATAGCTATTTCTGTTGTTTACTCAGCTGA AAGGCAGATACGGAGGAACTTATGTGTTCACGATGACAACATCTTCAGATCATGAGAGGGAAGTGGAGAGCCTGGTGATG AAGCTCACCCCAAATGCCAACAAGATATACCATCTCTCTGGTACCCAGAAGTTTGAGCTGCCAAAAGAGGAGGTTAGAAT TGCTGATGTATTCCGAGCAGTGGAAGCTGCAAAGAAGAACTTCACTGTTTCTGCATGGGGTTTAGCTGACACCACATTGG AAGATGTTTTCATCAAGGTTGCACGTGAGGCTCAGGCATTTGATACCCTGTCTTAA
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0247900.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAGTTGTATCCTGGATTTGCTTTATATCGTGGGTTATATGAGTTTGCACAATTTTCCACGAATGGGAGTAATATGGG GACTGATGGTATGCGGTGGCGGGATCTAAGTGATGGCACCAATGGCATGAAAGAGGTCTTAATTATCATGTTGGCTGAGT GGGTAGTAGTGCTCTTTGCTGCTTATTACATCGATCAAGTATCGTCATCAGGAAGCGGAAAAGGTCCTCTTTTCTTCTTG AAAGGATTTCAAAGAAAACCTCCATCATTTCAGAAGCCTAGTGTCCAAATGCAGGGGTCTAAAGTTTTGACCCAGAATGA GAAACCTGATGTCATCCAAGAAATGGAAAAGGTGGAGCAGCTCCAACTTGAACCAACTATTAGTCATGCAATTGTATGTG ATAACCTACAAAAAGTCTATCCAGGGAGGGATGGAAATCCAGACAAAGTTGCAGTGAGAGGGTTGTTTCTTGCTGTGCCT CAAGGGGAATGCTTTGGTATGCTTGGTCCCAATGGTGCTGGGAAGACTTCTTTTATCAGTATGATGATTGGTCTTACAAA GCCAACCTCTGGTACGGCATCTGTTCACGGCCTTGACATAAGAACTCATATGGAAGGAATATATACTAGCATGGGGGTAT GCCCACAGCATGACTTACTTTGGGAAAGCTTGACAGGCAGAGAGCACCTACTTTTTTATGGCAGACTTAAAAATCTTAAA GGTTTGGTCTTGACACAAGCAGTAGAAGAATCTTTGAAGAGTTTAAACCTTTTCCATGGAGGGGTTGCTGATAAACAAGC TGGCAAATACAGTGGAGGGATGAAGAGGAGGCTTAGTGTCGCAATTTCATTGATTGGGGATCCCAGAGTTGTTTATATGG ATGAGCCAAGTACCGGGTTAGACCCTGCTTCAAGGAAAAGCTTATGGAATGTTGTTAAGCTTGCAAAACGGGACCGTGCG ATCATCCTGACCACACATTCCATGGAAGAGGCAGAGGCCTTATGTGATCGGTTAGGAATTTTTGTAAATGGTAGCTTGCA GTGTGTAGGAAATGCAAAGGAGCTGAAAGGCAGATACGGAGGAACTTATGTGTTCACGATGACAACATCTTCAGATCATG AGAGGGAAGTGGAGAGCCTGGTGATGAAGCTCACCCCAAATGCCAACAAGATATACCATCTCTCTGGTACCCAGAAGTTT GAGCTGCCAAAAGAGGAGGTTAGAATTGCTGATGTATTCCGAGCAGTGGAAGCTGCAAAGAAGAACTTCACTGTTTCTGC ATGGGGTTTAGCTGACACCACATTGGAAGATGTTTTCATCAAGGTTGCACGTGAGGCTCAGGCATTTGATACCCTGTCTT AA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0247900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MELYPGFALYRGLYEFAQFSTNGSNMGTDGMRWRDLSDGTNGMKEVLIIMLAEWVVVLFAAYYIDQVSSSGSGKGPLFFL KGFQRKPPSFQKPSVQMQGSKVLTQNEKPDVIQEMEKVEQLQLEPTISHAIVCDNLQKVYPGRDGNPDKVAVRGLFLAVP QGECFGMLGPNGAGKTSFISMMIGLTKPTSGTASVHGLDIRTHMEGIYTSMGVCPQHDLLWESLTGREHLLFYGRLKNLK GLVLTQAVEESLKSLNLFHGGVADKQAGKYSGGMKRRLSVAISLIGDPRVVYMDEPSTGLDPASRKSLWNVVKLAKRDRA IILTTHSMEEAEALCDRLGIFVNGSLQCVGNAKELKGRYGGTYVFTMTTSSDHEREVESLVMKLTPNANKIYHLSGTQKF ELPKEEVRIADVFRAVEAAKKNFTVSAWGLADTTLEDVFIKVAREAQAFDTLS
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
NON_CYTOPLASMIC_DOMAIN
1 45 45 - –
PANTHER
PTHR19229
1 450 450 1.2E-230
IPR026082
PANTHER
PTHR19229:SF204
1 450 450 1.2E-230 –
Phobius
TRANSMEMBRANE
46 64 19 - –
Phobius
CYTOPLASMIC_DOMAIN
65 453 389 - –
Gene3D
G3DSA:3.40.50.300
119 371 253 4.1E-57 –
SUPERFAMILY
SSF52540
130 359 230 2.55E-49
IPR027417
ProSiteProfiles
PS50893
131 368 238 19.548
IPR003439
CDD
cd03263
135 356 222 3.14825E-103 –
Pfam
PF00005
157 297 141 2.1E-22
IPR003439
SMART
SM00382
161 345 185 8.8E-8
IPR003593
ProSitePatterns
PS00211
270 284 15 -
IPR017871

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0016021
Cellular component Integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
Subterm of
GO:0016887
Molecular function ATPase activity Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
Subterm of
GO:0042626
Molecular function ATPase activity, coupled to transmembrane movement of substances Catalysis of the reaction: ATP + H2O = ADP + phosphate, to directly drive the active transport of a substance across a membrane.
Subterm of
GO:0055085
Biological process Transmembrane transport The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0247900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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