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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0283800 |
| Transcript ID | LotjaGi4g1v0283800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DNA helicase; TAIR: AT2G07690.1 Minichromosome maintenance (MCM2/3/5) family protein; Swiss-Prot: sp|O80786|MCM5_ARATH DNA replication licensing factor MCM5; TrEMBL-Plants: tr|B3GNI3|B3GNI3_PEA DNA helicase; Found in the gene: LotjaGi4g1v0283800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:65609748..65615275) extracted from Lotus japonicus Gifu genome v1.2.
CAATTTTCCCGCCAATACTTTCCCGCCAAAACCACCTTCCATTTCTTTTTCTTCTTCTTCTCCTTCTCCTTCTACCCCAA CCGAAACAGAAACCCTAACCCTAACTCTCAAACTGCGAATCGGAGAAGATGTCAGGGTGGGACGAAGGAGGCGTGTACTA CAGCGACCAAGCGCACTCATGGGACGACGCCGGCCTCACCGAATCGGAAGCCGGCGCCTCCAATCACTCCCTCCTCCAGA AGTTCAAGGAATTCATCCGAAACTTCGAAACCGGCAACAACTACTTCCCTTACAGAGAGAGCCTCCTCAAGGACCCTAGC TTCCTCCTCGTCGATTTTGAAGATCTCGGCACCTTCGATGATGCCCTTCCCGGCAAGCTCCGCGCTAACCCCGCCGATTT CTTGCCCCTGGTTTGTGCTCCATTTTCCCTCTCCATTTTCTATCTCTGCATCTGCCATCGGATCTGATTTCAGGCTAATT TGTTTGATTTTGATGTGTTGTGTAGTTCGAGACGGCGGCGGCGCAGGTTCTGGTGAGTTTGAAGACCAAGGTGCCTGGGG ATACCGGAGAAATGGAGGATCCGGCGCCTAGGGATGTTCAGGTTCTCCTCACCTCCAAGGAGGATCCAGTGCCTATGAGA TCGCTAGGGGTAAGTCGATTTTGAACCTAATTCATAGTTTGATTATTGGAAATTGCTCGCGGAAATGCTGTTTTTCAATT TCTTGTTCAATTTATTATGAGGGTTTTGGTTCCAATTGAGACATTTTGCAAGTTGCCCTGGAAATTTTTTGCAATCAACC AGTGTATTTGATATGGGTGTGTCTTCTGGCATTTTGAGTATCTGGTCCAGATGGGTTTGTCTTAAGTTTTAATTTTTTGC ACAGGCTCAATACATATCGAAGCTTGTTAAAATTGCTGGGATTACTATTGCTGCGTCGAGGACGAAGGCAAAGGCAACTT ATGTCACCCTGATATGTAAGAACTGCAGGAATGTGAAGCAAGTTCCGTGTAGGCCTGGACTTGGGGGAGCAATTGTTCCT CGTTCCTGTGATCACGCTCCTCAGGTTTAGTTTGCACTGCATATTTTAGTTTTGCAGCTTTTTGCTTGTTTTTGTGATAT GTGTTATAAGTTTAGAACATTTCTGTAGCCTGGAGAAGAACCTTGCCCAATTGATCCGTGGCTTGTAGTTCCTGACAAAA GCAAGTACGTTGATCAACAAACATTGAAGCTGCAAGAAAATCCGGAGGTAGTAATCTGATATTGATTCAGAGAATGTTTT AGTGTTTTGGGGTTACCATCATATATGACATTTTATCATTGCTATTTAAGGATGTTCCAACTGGAGAACTCCCTAGAAAC CTGCTTCTCTCTGTAGATCGTCAACTTGTTCAAAAAGTAGTACCAGGCTCAAGATTGACAATCATTGGAATCTATAGTAT CTACCAGGCTTCCAACTCTTCTACATCGTGAGATTCATCATCCTTTTTTTCATCTTCTAATTTCTTCATTGTCTGGTCCA TAATTGATATATCTATCTTCAAATTGCTTGTGATTTATGCAGCCAAAAAGGAGCCGTTGCAATTAGACAGCCTTACATTA GGGTCGTAGGAATGGAGGATGAAAATGATGCCAAGTCCCGAGGACCAGATATTACAGAAAAAGAGGTAAATATTGAAACT TGAAACAATTATAAATTGACTATTTCTTTCTTCCTTTAATACCTTGTTGATTCCCTCTCACCTTAGATGAATGTTGAAGT GTTTAAAATGTGGTCTCTGAAACTTTATTTTTCATTGTAGTTTCATTAGGATATCAATGTTTTCAGTAATTTACCTTTTC CCTTCAAATGCTAGATTCCAGCTACGATTTCTAAGTTCTTCTATCATTATCTTATTTTCCCCATTATAAACCTAGAATGA ATTTTCACTCCTACTTGATATCATAGTCCCTGTCTACTGAGGTTCATGATGCAAATAATGGTAATGTTTGCAGAAAGAAG AATTCAGAAAGTTTGCAGCTCGCCCTGATGCATATGAAGCAATATGTAAAAAGGTTGCTCCATCTATATTTGGACATCAG GATATAAAAAAGGCTGTGGCCTGTCTTCTATTTGGAGGATCGAGAAAGGTATAATGTTCTTCAAGTATCCAACTATCCAT CTATATTGTTGCGGAATAGCAAAATTTCATACATGGCTACTGATCTTGTTCAAATTCTATGCTAGCAGAATTTGCCAGAT GGAGTGAAATTAAGAGGTGATATTAATGTGTTGCTTCTGGGGGATCCGTCTACAGCAAAGTCACAGGTTATTTCTTTTGT TCTTTCTGCAGACTAGTTCTTTAGTTTCCATGTTGCAAATGAGTGTAACCAAGTGTGCCACTTGCATTGTTGTTAGTTTT GTGTGCAAAGGTAATAGGATTTGTTGCCAGTTGTACAGTTAGGGTTAGATTTATAACATGAAATAAATGCCCAAGTTTTT TTTTTCCCTTTTTTTAATATATTTAGCTTATCCAACGATTATCTTTTCAGTTTCTCAAGTTTGTTGAAAAGACAGCTCCT ATTGCTGTTTATACTTCTGGGAAAGGGTCTTCAGCTGCTGGGCTCACAGCTTCTGTAATTCAAGATAGCAGCACTGTAAG TTCTTCTCCTTCTACATGGTTTGTGTATTAGATAGCAGATTTCCGTCATCACTACTTATTGTCACTACTTGTAGTTGAGA TACGATCATAAGCTAGTCCTTCACCTATCTTGATAGAGAAGTCTCTGAATTTTGTTCTGTGAATTCCAGCGCGAGTTTTA TCTTGAAGGAGGAGCTATGGTCTTGGCTGATGGAGGTGTGGTCTGCATCGATGAGTTTGACAAGATGAGACCAGAAGATA GGTATTGTAAACTGTTATTTCTTTTTTGAAAGCCATAGTTGATGGGCCTTGGTGAATTTTTTTTTGGTTTTTGTGATCTA GAGTTGCCATTCATGAAGCCATGGAACAGCAAACTATATCCATAGCCAAAGCAGGAATAACAACTGTTCTTAATTCAAGA ACTTCTGTTCTTGCTGCTGCCAACCCTCCTTCAGGACGTTATGACGATCTCAAGGTCTACTGTCATATGCTCTCTCATCT TTTTTCATTTTCTTAATATTCACATTCACTACATGAGAGTATGACACTAATAGGAGTCGTAAATGTTCTCCAGACTGCAC AGGACAACATTGATTTACAGACCACTATTCTTTCTAGATTTGATTTAATCTTCATTGTGAAGGACATCAGGTCGTACGAC CAAGATAAGGTAATCTTCATGTTTTTGCATTCTCACTTTTCACCATGCTAACTTTGAATGCACCTTGTCCTATGAAGATA TACTAGGTAAAATTTGTTTTTTCTGAATGTTGTGATGTTAATATCTAAGCTCACATTATCTCGAGCAGTTTTTTTTATGT AGTGTAATATTTAGCAAAAGATAGCTCATTTTTTGTGTAGGGCATTAATGGACTAGTTTTGCAGACCATTTGGAAATGTG TTTTATACATTGTGAAATATTTTATTTTCAATAGTTCTCAAGTCAGTGGTTGACTTATTTTGTTTGCAGGAAATAGCTGG TCATATCATTAAGATTCATTCAGATGCTTCTGGTGTAACAATGGGTGAGAGTAATGTTTCCAAAGAAGAGAATTGGCTGA AGAGGTATGTGCTATATCTGTCAATTTAGTCTGACTCCAAGCATTACTTTTATTCAATTGTTTGAGAGAATGAACTTTGA GCTGTTATCTAAATAGGTATTTGCAATATTGTCGAAGAGAGTGCCACCCTCGTCTATCGGAATCTGCAGCAGAATCACTG CAGACTGACTATGTAAAAATCAGACAGGTATGATTGTATATGTTATCAAATTAGCTTATTGGTTATTTTGGCTTTTAGTT TCCATCTGGTTATTGGATTGGAGGTTGATGATGATGTTGTAGACCACATGGGTCTTTTGTTAATTTGGATGTTATTTGTT AGTTGTTACCATATTTCTCCTGTGAATGCTGATTTTGTGAAACGGATCTGCTTTTGGAAATATAATTCACTTTTTCTTTT GAAAAAAATATAGGATATGAGGCAGCAAGCAAATGAAACTGGAGAAGCTGCTGCAATACCAATTACTGTAAGGCAGCTGG AAGCTATTGTTAGGCTGAGTGAGGCACTTGCAAAGATGAAACTGTTAGTATTGCTCTTATTCTTTTCTACACTTAGTACC TTTTGTCCATATCGATCTGGTGCAATTTACTAAAATATAAAAACATGTGGTGTCTGACCTATGTTTTCTGATTCATAATT CTACCACTGCATGTAAAATCCTAAATATACTAATCAAAATTTCCCTATTTTTCTTACATCGGTCATCTTGTTTTTTTTCT TCTTTTTGCAGCTTCTTTGTTTGATGGTCCATGAATATTTCTTTTTCTTTTGACAAGATATGACTCATGTTTAAATCCTG TACCAGATCTAATGTCGCAACTGAGGAGCATGTGAAAGAAGCAACAAGGCTTTTCACTGTGGCTACGATGGACGCAGCTA AGTCAGGAATAAACCAACAAATTAATCTTACACCTGAAATGGCGAATGAGATAAAGGTATGCCTTGTGAAAATACCATCA ACCCTTTTCAATCTAGCTTCATATTCTGATGGAAATTTATTGTTTGCACTGTGAGCAGCAAGCCGAAACCCAGATAAAGA GAAGACTTGGGATTGGAAACCACATATCAGAAAGAAGGCTGATTGATGACCTCGGAAGAATGGGAATGAATGAATCTATT GTAAGTACTACATGGGCACTTGACTTAAAACTTAAATGACTGCCTTAGCTTATAAACCTAAATTTGATGTCTTCATCTGG TTCAAACTTTTAACATACAACATTTGGCAGGTGAGAAGAGCCCTTGTTATCATGCACCAGAGAGACGAAGTAGAGTACAA GCGAGAAAGGCGTGTTGTATTCAGGAAAGCATAATACATCAGATTTCTATCTATCAAAGGGCATGCAGAATGGCAATTGA TTGAGTTCTACCTGTAATTTTTTTCTAGCTTTTTTTCTTTTGTTTAACTTATTGCTTCTTCAAGCATATCCCATGTATAT TAATCGTGTGCTCTCATGGTAAGGGGGGAACTGGGAAGTCTAGCGTTACTTAGCGTTATGGAATTATGAACATTTTTTAT TGCACAGCTCTGGAATCTGGATTGTTTCAAAACAATGTCTCTTACGAGGTCCACGATAAGTTGTGATTGTAATACTTCAG CGTATGATATCTAATAGGGAGCATGACCCCCAAAGAGCTTATTTGAGGCTGCTTTAACGTAAAAAAGAGGATGCTTTAAA TTAATTAATTTTTCTATCATTTGTATATTCTAATTCTAATACAGTGAGAAGGGTTTTCAATCCTCAATGTACTGAGGCTT CAACCATTCTAATTGTACTGAGACTTCAACCATTTATCTTAGCTCTCCACTTTGGCAATGACTCCCGTTTTGTTTGCCAT GTGGTGGT
CDS sequence (LotjaGi4g1v0283800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAGGGTGGGACGAAGGAGGCGTGTACTACAGCGACCAAGCGCACTCATGGGACGACGCCGGCCTCACCGAATCGGA AGCCGGCGCCTCCAATCACTCCCTCCTCCAGAAGTTCAAGGAATTCATCCGAAACTTCGAAACCGGCAACAACTACTTCC CTTACAGAGAGAGCCTCCTCAAGGACCCTAGCTTCCTCCTCGTCGATTTTGAAGATCTCGGCACCTTCGATGATGCCCTT CCCGGCAAGCTCCGCGCTAACCCCGCCGATTTCTTGCCCCTGTTCGAGACGGCGGCGGCGCAGGTTCTGGTGAGTTTGAA GACCAAGGTGCCTGGGGATACCGGAGAAATGGAGGATCCGGCGCCTAGGGATGTTCAGGTTCTCCTCACCTCCAAGGAGG ATCCAGTGCCTATGAGATCGCTAGGGGCTCAATACATATCGAAGCTTGTTAAAATTGCTGGGATTACTATTGCTGCGTCG AGGACGAAGGCAAAGGCAACTTATGTCACCCTGATATGTAAGAACTGCAGGAATGTGAAGCAAGTTCCGTGTAGGCCTGG ACTTGGGGGAGCAATTGTTCCTCGTTCCTGTGATCACGCTCCTCAGCCTGGAGAAGAACCTTGCCCAATTGATCCGTGGC TTGTAGTTCCTGACAAAAGCAAGTACGTTGATCAACAAACATTGAAGCTGCAAGAAAATCCGGAGGATGTTCCAACTGGA GAACTCCCTAGAAACCTGCTTCTCTCTGTAGATCGTCAACTTGTTCAAAAAGTAGTACCAGGCTCAAGATTGACAATCAT TGGAATCTATAGTATCTACCAGGCTTCCAACTCTTCTACATCCCAAAAAGGAGCCGTTGCAATTAGACAGCCTTACATTA GGGTCGTAGGAATGGAGGATGAAAATGATGCCAAGTCCCGAGGACCAGATATTACAGAAAAAGAGAAAGAAGAATTCAGA AAGTTTGCAGCTCGCCCTGATGCATATGAAGCAATATGTAAAAAGGTTGCTCCATCTATATTTGGACATCAGGATATAAA AAAGGCTGTGGCCTGTCTTCTATTTGGAGGATCGAGAAAGAATTTGCCAGATGGAGTGAAATTAAGAGGTGATATTAATG TGTTGCTTCTGGGGGATCCGTCTACAGCAAAGTCACAGTTTCTCAAGTTTGTTGAAAAGACAGCTCCTATTGCTGTTTAT ACTTCTGGGAAAGGGTCTTCAGCTGCTGGGCTCACAGCTTCTGTAATTCAAGATAGCAGCACTCGCGAGTTTTATCTTGA AGGAGGAGCTATGGTCTTGGCTGATGGAGGTGTGGTCTGCATCGATGAGTTTGACAAGATGAGACCAGAAGATAGAGTTG CCATTCATGAAGCCATGGAACAGCAAACTATATCCATAGCCAAAGCAGGAATAACAACTGTTCTTAATTCAAGAACTTCT GTTCTTGCTGCTGCCAACCCTCCTTCAGGACGTTATGACGATCTCAAGACTGCACAGGACAACATTGATTTACAGACCAC TATTCTTTCTAGATTTGATTTAATCTTCATTGTGAAGGACATCAGGTCGTACGACCAAGATAAGGAAATAGCTGGTCATA TCATTAAGATTCATTCAGATGCTTCTGGTGTAACAATGGGTGAGAGTAATGTTTCCAAAGAAGAGAATTGGCTGAAGAGG TATTTGCAATATTGTCGAAGAGAGTGCCACCCTCGTCTATCGGAATCTGCAGCAGAATCACTGCAGACTGACTATGTAAA AATCAGACAGGATATGAGGCAGCAAGCAAATGAAACTGGAGAAGCTGCTGCAATACCAATTACTGTAAGGCAGCTGGAAG CTATTGTTAGGCTGAGTGAGGCACTTGCAAAGATGAAACTATCTAATGTCGCAACTGAGGAGCATGTGAAAGAAGCAACA AGGCTTTTCACTGTGGCTACGATGGACGCAGCTAAGTCAGGAATAAACCAACAAATTAATCTTACACCTGAAATGGCGAA TGAGATAAAGCAAGCCGAAACCCAGATAAAGAGAAGACTTGGGATTGGAAACCACATATCAGAAAGAAGGCTGATTGATG ACCTCGGAAGAATGGGAATGAATGAATCTATTGTGAGAAGAGCCCTTGTTATCATGCACCAGAGAGACGAAGTAGAGTAC AAGCGAGAAAGGCGTGTTGTATTCAGGAAAGCATAA
Protein sequence (LotjaGi4g1v0283800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSGWDEGGVYYSDQAHSWDDAGLTESEAGASNHSLLQKFKEFIRNFETGNNYFPYRESLLKDPSFLLVDFEDLGTFDDAL PGKLRANPADFLPLFETAAAQVLVSLKTKVPGDTGEMEDPAPRDVQVLLTSKEDPVPMRSLGAQYISKLVKIAGITIAAS RTKAKATYVTLICKNCRNVKQVPCRPGLGGAIVPRSCDHAPQPGEEPCPIDPWLVVPDKSKYVDQQTLKLQENPEDVPTG ELPRNLLLSVDRQLVQKVVPGSRLTIIGIYSIYQASNSSTSQKGAVAIRQPYIRVVGMEDENDAKSRGPDITEKEKEEFR KFAARPDAYEAICKKVAPSIFGHQDIKKAVACLLFGGSRKNLPDGVKLRGDINVLLLGDPSTAKSQFLKFVEKTAPIAVY TSGKGSSAAGLTASVIQDSSTREFYLEGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTS VLAAANPPSGRYDDLKTAQDNIDLQTTILSRFDLIFIVKDIRSYDQDKEIAGHIIKIHSDASGVTMGESNVSKEENWLKR YLQYCRRECHPRLSESAAESLQTDYVKIRQDMRQQANETGEAAAIPITVRQLEAIVRLSEALAKMKLSNVATEEHVKEAT RLFTVATMDAAKSGINQQINLTPEMANEIKQAETQIKRRLGIGNHISERRLIDDLGRMGMNESIVRRALVIMHQRDEVEY KRERRVVFRKA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 28 | 119 | 92 | 9.4E-8 | – | |
| PANTHER | 32 | 724 | 693 | 1.0E-248 | – | |
| PANTHER | 32 | 724 | 693 | 1.0E-248 | ||
| Pfam | 37 | 128 | 92 | 7.5E-11 | ||
| SUPERFAMILY | 38 | 295 | 258 | 7.54E-51 | ||
| SMART | 134 | 648 | 515 | 1.9E-249 | ||
| Gene3D | 138 | 283 | 146 | 1.3E-32 | – | |
| Pfam | 138 | 273 | 136 | 4.4E-35 | ||
| PRINTS | 139 | 154 | 16 | 8.4E-25 | ||
| PRINTS | 165 | 177 | 13 | 8.4E-25 | ||
| Gene3D | 168 | 219 | 52 | 1.3E-32 | – | |
| PRINTS | 289 | 301 | 13 | 8.4E-25 | ||
| Gene3D | 312 | 653 | 342 | 2.8E-138 | – | |
| Pfam | 316 | 538 | 223 | 4.2E-101 | ||
| ProSiteProfiles | 328 | 534 | 207 | 91.914 | ||
| CDD | 332 | 645 | 314 | 0.0 | – | |
| SUPERFAMILY | 338 | 644 | 307 | 1.11E-38 | ||
| PRINTS | 369 | 384 | 16 | 7.0E-34 | ||
| PRINTS | 429 | 443 | 15 | 7.0E-34 | ||
| ProSitePatterns | 437 | 445 | 9 | - | ||
| PRINTS | 457 | 470 | 14 | 7.0E-34 | ||
| PRINTS | 481 | 493 | 13 | 7.0E-34 | ||
| PRINTS | 508 | 516 | 9 | 7.0E-34 | ||
| Pfam | 557 | 645 | 89 | 7.2E-29 | ||
| PRINTS | 565 | 580 | 16 | 8.4E-25 | ||
| Coils | 578 | 598 | 21 | - | – | |
| PRINTS | 641 | 658 | 18 | 8.4E-25 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA replication origin binding | Interacting selectively and non-covalently with the DNA replication origin, a unique DNA sequence of a replicon at which DNA replication is initiated and proceeds bidirectionally or unidirectionally. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | DNA replication | The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA. | ||
| Biological process | DNA replication initiation | The process in which DNA-dependent DNA replication is started; this begins with the ATP dependent loading of an initiator complex onto the DNA, this is followed by DNA melting and helicase activity. In bacteria, the gene products that enable the helicase activity are loaded after the initial melting and in archaea and eukaryotes, the gene products that enable the helicase activity are inactive when they are loaded and subsequently activate. | ||
| Cellular component | MCM complex | A hexameric protein complex required for the initiation and regulation of DNA replication. |
Expression pattern of LotjaGi4g1v0283800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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