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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0315100 |
| Transcript ID | LotjaGi4g1v0315100.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ABC transporter B family protein; TAIR: AT3G62150.1 P-glycoprotein 21; Swiss-Prot: sp|Q9M1Q9|AB21B_ARATH ABC transporter B family member 21; TrEMBL-Plants: tr|G7JR16|G7JR16_MEDTR Transporter ABC domain protein; Found in the gene: LotjaGi4g1v0315100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:69202663..69209573) extracted from Lotus japonicus Gifu genome v1.2.
AAAAGTTGTTTTTTTCATATCAAAGAGCTCAGTTATTCCATGGTGCACTTAAGCCATAAATAAATTGTTAGCTTTTGATA ATGGTACGGTGCATCTAATTCTGTTCTTTTCTTTCACTTTATCTGTGATTTAAAGACCAAGTTTTGCTTCCAATGCTAGG CTACTTCCAACTGGTTTGCCATCATTCTGAGAAGGCAGGAAGCACTTCTACCTCAAGCTTCCTACTAGTTTTTGGCTTTA AATTTTGTTTTGGTCAGAAAATAACAATGACAAGAACACATTGATAGGTAAGACTTTTGTTTTTCTCTAGTACATGTTTT GGTTTTGAATGTGCTTTGATCAAACATGTTGGTTTTGCAAGTTTACCAGTCATCATATTCTGGTTTCACTGCTAACTATT TTTTCCACTGAATCTCTCCAGCTCTTGAATTTGATTAAGTCAACTAGTTTCTAATTTATGTACCTATTGAATTTTTTTGA CATCTAAGGAATTATAACTCACTTGAGTGTTGACTTTGGATGGAAAAACAAATTTGCTAACTCAAACCAATGATCCTTCT TTTGCAGCTGTTTCCTGCTGGTGTTTGAAAGCTGTAACAACAGAAGTTCTCCTTGGGAAAAATGGTGGCCAAGGCCAGAT TAGATGGAGATATCACTTCAACAGAAATGACAGGATCAACAAGTGATTCATCAGTTCTAGATCCTGGAAACAGGCTGCAG GATTCAAAAAAGAACAAGAGCAAGGACCAAAGCAATAAATCAGTACCCTTTCATAAGCTTTTCTCATTTGCAGATTCTTG GGACTATTTGCTGATGTTTGTTGGAACAATAACTGCTATTGGGAATGGAATCTCTATGCCTTTAATGACTATAATTATTG GAGATACAATTGATGCTTTTGGAGGAAATGTTGACAATAAACAAGTTGTTCATGAAGTTTCCAAGGTAACAACTAGCCCT ACTTTATGGAACCAAACAAGTGTATAGTAATTTTTATTCTAAATTCCCATCTTATCATTTTCTAGTGCTTATTTCTAGTA TTCTGCAATAATCCATCACGGTTCTATTCATGCCCAGGCATCTCTGAAGTTTGCTGTCCTGGGTGTATGCGCCTTTTTTG CAGCATTTTTGCGTAAGAACACCATATTCTCTAGCTTGATGTAACTGGATAGCTTAATAAAAAATAACGAGATACGTACA ATCTTTCAGAGGTATCTTCCTGGGTGATCACCGGGGAGAGACAAGCTGCAAGAATAAGAGCCTTATACCTCAAAGCAATT CTAAGGCAAGATATCAGTTTCTTTGACAAGGAAATGAACAATGGTGAGGTTGTTGAAAGGATGTCAGGTGACATTGTTCT TATTCAAGATGCCATGGGTGAAAAGGTATTTACCCACCACCTCATATCATCACCATCTCATCTAACTATGATGACACAAA TTTAAAGATAACTTTTTCTTCCTCCTCTTTGGCTGATATTCTCAGGTAGGAAAATTCATACAGTATGTGGCATCTTTTTT AGGTGGATTAATCATGGCATTCATCAAGGGCTGGCTCCTAACCCTTGTCCTCCTATCTGCTCTTCCACTTCTTGTCCTCT CTGGTTCACTAATGAGCATTGCTTTCGCAAAGATGGCATCGCGTGGACAGGCAGCTTATTCAGAAGCAGCTGCTACAGTA GAAAGGACAGTTGGTTCAATTCGAACTGTATGCCAATCATCACAGAGAGCTATTCATTACTTTTTCTTCTCATGTTTCTA GAAAGTGGTGTACTAAGCATACTTTATATTCCTCCAATGCAGGTTGCATCATTTACTGGCGAGAACCAAGCTATAGCTCA ATATAATCAGTCCTTAACTAATGCTTACAGAACAGGAGTTCAGGAGGGATTGGCTACTGGTTTAGGCCTAGGTTCAGTTC GTTTATTTGTTCACTGCACTTATGCTATGGCTGTATGGTTTGGAGGGAAGATGGTACTGGAGAAAGGTTATACCGGAGGT GAAGCAATGGGTGCATTCTTTGCAATGTTGACTGGTTCCTTGTAAGTTAATTTCTTCCTTACCGTCTAGATTGTGGATGT ATCATTCCATATCCTACAACCCTAAGCTTTCCAAGAAAATCAGATACACATCACATTTCTGGGCTAATTTTATTCTGCAG GTCTCTGGGGCAGGCATTTCCAATCTTAACTGCATCTGCAGCAGGACAAGTTGCAGCCTATAAAATGTTTGAGACAATAA CGAGGCAGCCAGATATTGATGTTTATGACTCTACTGGTCGGCAGCTAGATGATATTTCTGGAGATATAGAACTTAGGGAG GTTTGCTTTAGTTATCCTTCAAGACCAAATGAAGTGATATTCAATGGATTTTCTATTTCAATATCAAGTGGAACTACTGC AGCTTTGGTAGGGCAAAGTGGGAGTGGGAAAACAACAGTTGTCAGTTTGATAGAGAGATTTTACGATCCACAAGCTGGTG AAGTCCTCATTGATGGTATCAACCTCAAAGTGTTTCAACTAAAATGGATCAGACAGAAAATAGGTCTTGTCAGCCAGGAA CCAATCCTCTTTACTTGCAGCATTAAAGAGAACATTGCATATGGTAAGGATGGGGCTACAGATGAAGAAATCAGAGCTGC AGCAGAGCTTGCTAATGCTGCTAATTTCATACATAAATTTCCCCACGTGAGCTCACAATTCTTCATTCATCTTACGAAAT TTGCTATGTTCTTTTGCTTTTCAACAATTTTAATTTCAAATTTCACACAATTCTGAAGACCATTATGAGTGTGTGGATGT GTATTCATTAAGTGGAATTAATGACTCATTAGTTTTGTAAGATTTTGAATTTAGGGGCTTGAGACAATGGTTGGCGTGCA TGGAACTCAGCTTTCTGGAGGTCAAAAGCAAAGAATTGCTATAGCAAGAGCAATCCTAAGAGATCCAAGAATTCTTCTCC TTGATGAAGCTACAAGTGCACTTGATGCGGAGTCTGAAAGAGCGGTACAAGAGACACTAGACAGAATCATGATCAACCGA ACAACTATCATTGTAGCCCATCGCCTAAGCACAATAAGAAATGCTGATATCATTGCCGTTATTCACCAAGGAAAAGTAGT AGAAAAAGGTATATAGATACTAAGTTGGCACAGAAATGAAACTCAGCATGGCAATTTACTTTCAAATCTCTCTCCCTCAC ACAAACACATCTTCCTTTTTCCTGACATATACAATACCGCATTCTCATATCTTTTGACTAATTAGGCACACATGCTGAAC TCACTAATGATCCTGATGGACCTTATAGCCAGCTCATTAGATTGCAAGAAATTAAAAGAGAGTCAGAACAGCATGGTGAA AATGACATGGACAGGCAAGAAAATTTTGTAGACTCTACAAGAGAATCAAGCCAGCGGATTTCTTTCCCACGGTCTTTAAG CCGGGAATCATCTGGAATTGGAAACAGTAGTCATCACTCATCCAGAATATACAATGATATACCTACCACACTATTTCCTT CAGCAACATCAGATCCACCTTCAGATGTCCCAATTCTTCGCCTTGCTTATCTTAACATGCCTGAAATCCCAATGTTACTC TTAGGGACTGTAGCAGCTGCAGCAAATGGAGCCATACTACCCGCTGTGGGGCTCCTTGTCTCCATTATGATAGATACTTT CTTTGAACCTGCAGATGAACTTCGTAAAGACTCAAAGTTTTGGGCATTAATATTTGTTGCCCTTAGTGTGGCTTCCTTCT TATTTTATCCATTGAGGACCTATTTTTTTGCTGTTTCTGGTTCTAAGTTGATAAGGAGGGTCCGATTAATGTGTTTTGAG AAAATAATTCACATGGAAGCAGGCTGGTTCGATAAAGATGAGAATTCAAGTGGGGAACTGGGAGCGAGGCTGTCAACTGA TGCTGTTTCTATTCGAACTTTGGTCGGGGATGCACTTGGTTTGCTGGTTCAAGATATTTCTACAGCAATTACAGCCTTGG TAATTGCCTTTGAGGCAAACTGGCAGTTGTCTCTCATCATTCTTGTTTTGCTACCTCTACTATTATTAAATGGATATCTG CAAATCAGGTCCATGCAAGGATTCAGCACAGATGCAAAGGTTTGTGCCTCACTGACATCAAACTATCAACTACTTTACCT ATTTTTTTAAGACATAGGATGTGTCACTGACATCAAACTATCAACTACTTTACCTATTCATATTTAAGAAACTTATTGAA ATAATCTCAAAATAGGTTATAGGCAAGTATAACTTAGGAAAGTAAGCTTAAAACAACTTAAATGTAGGTCATAAACTATT TACATTAGTTCTCTCAAACACTTGGATCATCGTTTATGCTACAAGATAAGCTCAAATAAGCTCTTTCAAATAGGACCATA GTAGGAATAGGGTGACTGAAAACTTTGGATGTAAATATAATCTGAATTTCAAGTAATCAGATCGATCTCTATGCCCATTT CTACATGGAAAATGTAATATGAATAACTCGAAGACCAGTAAAGAAAACCATTATGCAAATCCATTTGATTGTGCCATGGA AGAGATGGTTTTTTTTTATGTATAAATGTAGCATTACTCTTTCTACATATACTCAGAGGATGGACTACTTCATGAGGATG AATTGAGTGTGTTTCAATTATGGTCTCTATACATTTTTGTCTCTATATTTGACTACTACTTCTTCGTTTTTAACATTTAA TCAGTACTAATAAACCATTTGACATGATGCTATTGTGCTTTATATATTTCACAGAAACTATATGAGGAAGCAAGTCAAAT AGCGAATGATGCAGTAGGGAATATTAGAACAGTTTCCGCTTTCTGTGCTGAAGAGAAGGTGATGGAGTTATACCAGAAGA AATGTGTGGGACCCTTCCAGACAGGTATAAGGCAAGGTTTAGTCAGTGGAACTGGTTTTGGTTTATCACTCTTCCTTCTG TTCTCTGTGTATGCATGCAGTTTTTATGCCGGAGCCCAACTTGTTGAGAATGGAAAAGCAACAATCTCAGAGGTTTTCCG TGTAAGCTAATTTCACTTAAGATAGTTTAAGATTTAAGTTCATCATATTCTTCTAGCATTAAACATTTAATTTCCTTATT TTCAGGTATTTTTTTCTCTCACAATGGCAGCGGTAGCATTATCTCAATCTAGCTTCATGGCCCCAGGGGTGAGTAAAGCA AAAAGTTCTGCTGCTTCTATATTTGCTATTCTTGATCAGAAATCAAAAATAGACCCTAGTGATGAGTCCGGAATGACATT TCAAGATGTCAAGGGAGAGATTGAGTTCCACCATGTCACTTTCAAGTATCCAACCAGGCCTAATGTTCATATATTCAGAG ATCTTTCCTTGAGGATTCATTCAGGACAGGTAACTTACAAGTGATACATTGGTTTGACTTTGGAAGACATAATTCTTTCA AACAACCTATCTAGGACTTTCTTAAGAGAGAATCTAAAAGTTTAATTATGCTGATGAAAATCAGACAGTTGCTCTTGTAG GCGAAAGTGGAAGCGGAAAATCAACAGTGATCTCACTGTTGCAAAGATTTTATGACCCGGATTCAGGTCAGATTACACTG GACGGCACAGAAATCCAAAAGCTACAACTTAAATGGTTCAGGCAGCAGATGGGCCTGGTAAGCCAGGAGCCTGTGTTGTT TAATGACACCATCCGAGCCAACATTGCATACGGAAAAGGCGGTGATGCAGCAACAGAGGCTGAAATTATAGCTGCAGCGG AACTGGCAAATGCCCACAAGTTCATTAGCAGTTTGCAGCAGGTAAACTACACAGCACTCAATGAGCTGAATCTGTTCCTA AACCTTGCACAACAAAAAATGTGCATTACAAGATTTTTTATAACTAGTTACCTAAAGTCTAAACTAAACACCATATGCAG GGGTATGATACAGTAGTAGGGGAGAGAGGGATTCAACTATCTGGAGGGCAGAAGCAGCGGGTGGCAATTGCAAGAGCCAT AGTAAAGAGTCCAAAAATATTACTACTAGATGAAGCCACAAGTGCACTTGATGCCGAGTCTGAGAAAGTGGTTCAGGATG CACTCGACCGAGTGAGGGTCGACAGAACCACTATAGTAGTGGCTCACAGGCTATCCACCATAAAGGGTGCAGATTCAATT GCTGTGGTTAAAAATGGGATCATTGTAGAGAAAGGAAAGCATGAAACTTTGCTCAACAAGGGTGGTACCTATGCTTCTTT AATAGCACTGCACACAAGTGCTAGTTCATCTTAGACTCTTTGAGCTTGTTGCACCTGTTTTCTAATGGTTTCTTTTCTTA ATCTCTTTTTCTGGCATTATTTCTATGCAGTGTAACTTTCTTAAGACTTGATTATCATTTTTAATGGGTCTTAAATGTAA CGCTTTCATTTCATCCTTAATGTAACACACACACAAACATCTGAATTCTAAAAATCAAAAGCCACAATGGACTCACAATT ACAATCAGAATTACAGTTAAAATCATAGAGACAGATTGAGGGACACTTGCCTCCGATGAACTCACTCACAACAGCATCCA GTTGCACTGTACACATTGATCCAGTTGAACTCACTCATGGCATTTTTTTTTGCTCCCATTAGCCCTGATGATATTGAAGA GAAGCAAATCTAATATTAGGGAATTGTTCTTCTTAAATTGAATTTGCGCCTGGAATTAATCGAAGGACATCCTTACCTAC AAAGGCTACACTTCAGAGAGGGGGGAAAAAGTTGTAACGCAACACATAGGTGTTGACCAAATGAGGTCATTCCGCCGGGT GCTCGCTTTAAGCAGTAAACCATTAGTCACTTATGCGGTTATGCCCTTCAAGATTGCGGTTATGCCCTTCAAGATTGAAT TGAGCTAACCACTATCTGATTACTTTAAAAC
CDS sequence (LotjaGi4g1v0315100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGGCCAAGGCCAGATTAGATGGAGATATCACTTCAACAGAAATGACAGGATCAACAAGTGATTCATCAGTTCTAGA TCCTGGAAACAGGCTGCAGGATTCAAAAAAGAACAAGAGCAAGGACCAAAGCAATAAATCAGTACCCTTTCATAAGCTTT TCTCATTTGCAGATTCTTGGGACTATTTGCTGATGTTTGTTGGAACAATAACTGCTATTGGGAATGGAATCTCTATGCCT TTAATGACTATAATTATTGGAGATACAATTGATGCTTTTGGAGGAAATGTTGACAATAAACAAGTTGTTCATGAAGTTTC CAAGGCATCTCTGAAGTTTGCTGTCCTGGGTGTATGCGCCTTTTTTGCAGCATTTTTGCAGGTATCTTCCTGGGTGATCA CCGGGGAGAGACAAGCTGCAAGAATAAGAGCCTTATACCTCAAAGCAATTCTAAGGCAAGATATCAGTTTCTTTGACAAG GAAATGAACAATGGTGAGGTTGTTGAAAGGATGTCAGGTGACATTGTTCTTATTCAAGATGCCATGGGTGAAAAGGTAGG AAAATTCATACAGTATGTGGCATCTTTTTTAGGTGGATTAATCATGGCATTCATCAAGGGCTGGCTCCTAACCCTTGTCC TCCTATCTGCTCTTCCACTTCTTGTCCTCTCTGGTTCACTAATGAGCATTGCTTTCGCAAAGATGGCATCGCGTGGACAG GCAGCTTATTCAGAAGCAGCTGCTACAGTAGAAAGGACAGTTGGTTCAATTCGAACTGTTGCATCATTTACTGGCGAGAA CCAAGCTATAGCTCAATATAATCAGTCCTTAACTAATGCTTACAGAACAGGAGTTCAGGAGGGATTGGCTACTGGTTTAG GCCTAGGTTCAGTTCGTTTATTTGTTCACTGCACTTATGCTATGGCTGTATGGTTTGGAGGGAAGATGGTACTGGAGAAA GGTTATACCGGAGGTGAAGCAATGGGTGCATTCTTTGCAATGTTGACTGGTTCCTTGTCTCTGGGGCAGGCATTTCCAAT CTTAACTGCATCTGCAGCAGGACAAGTTGCAGCCTATAAAATGTTTGAGACAATAACGAGGCAGCCAGATATTGATGTTT ATGACTCTACTGGTCGGCAGCTAGATGATATTTCTGGAGATATAGAACTTAGGGAGGTTTGCTTTAGTTATCCTTCAAGA CCAAATGAAGTGATATTCAATGGATTTTCTATTTCAATATCAAGTGGAACTACTGCAGCTTTGGTAGGGCAAAGTGGGAG TGGGAAAACAACAGTTGTCAGTTTGATAGAGAGATTTTACGATCCACAAGCTGGTGAAGTCCTCATTGATGGTATCAACC TCAAAGTGTTTCAACTAAAATGGATCAGACAGAAAATAGGTCTTGTCAGCCAGGAACCAATCCTCTTTACTTGCAGCATT AAAGAGAACATTGCATATGGTAAGGATGGGGCTACAGATGAAGAAATCAGAGCTGCAGCAGAGCTTGCTAATGCTGCTAA TTTCATACATAAATTTCCCCACGGGCTTGAGACAATGGTTGGCGTGCATGGAACTCAGCTTTCTGGAGGTCAAAAGCAAA GAATTGCTATAGCAAGAGCAATCCTAAGAGATCCAAGAATTCTTCTCCTTGATGAAGCTACAAGTGCACTTGATGCGGAG TCTGAAAGAGCGGTACAAGAGACACTAGACAGAATCATGATCAACCGAACAACTATCATTGTAGCCCATCGCCTAAGCAC AATAAGAAATGCTGATATCATTGCCGTTATTCACCAAGGAAAAGTAGTAGAAAAAGGTATATAG
Protein sequence (LotjaGi4g1v0315100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVAKARLDGDITSTEMTGSTSDSSVLDPGNRLQDSKKNKSKDQSNKSVPFHKLFSFADSWDYLLMFVGTITAIGNGISMP LMTIIIGDTIDAFGGNVDNKQVVHEVSKASLKFAVLGVCAFFAAFLQVSSWVITGERQAARIRALYLKAILRQDISFFDK EMNNGEVVERMSGDIVLIQDAMGEKVGKFIQYVASFLGGLIMAFIKGWLLTLVLLSALPLLVLSGSLMSIAFAKMASRGQ AAYSEAAATVERTVGSIRTVASFTGENQAIAQYNQSLTNAYRTGVQEGLATGLGLGSVRLFVHCTYAMAVWFGGKMVLEK GYTGGEAMGAFFAMLTGSLSLGQAFPILTASAAGQVAAYKMFETITRQPDIDVYDSTGRQLDDISGDIELREVCFSYPSR PNEVIFNGFSISISSGTTAALVGQSGSGKTTVVSLIERFYDPQAGEVLIDGINLKVFQLKWIRQKIGLVSQEPILFTCSI KENIAYGKDGATDEEIRAAAELANAANFIHKFPHGLETMVGVHGTQLSGGQKQRIAIARAILRDPRILLLDEATSALDAE SERAVQETLDRIMINRTTIIVAHRLSTIRNADIIAVIHQGKVVEKGI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 45 | 45 | - | – | |
| Phobius | 1 | 61 | 61 | - | – | |
| MobiDBLite | 12 | 31 | 20 | - | – | |
| PANTHER | 24 | 606 | 583 | 0.0 | – | |
| PANTHER | 24 | 606 | 583 | 0.0 | – | |
| SUPERFAMILY | 51 | 370 | 320 | 8.63E-55 | ||
| Gene3D | 54 | 380 | 327 | 2.7E-218 | ||
| Phobius | 62 | 86 | 25 | - | – | |
| TMHMM | 64 | 86 | 23 | - | – | |
| Pfam | 65 | 339 | 275 | 4.4E-60 | ||
| CDD | 65 | 361 | 297 | 2.30063E-98 | – | |
| ProSiteProfiles | 66 | 353 | 288 | 45.006 | ||
| Phobius | 87 | 112 | 26 | - | – | |
| TMHMM | 113 | 135 | 23 | - | – | |
| Phobius | 113 | 133 | 21 | - | – | |
| Phobius | 134 | 188 | 55 | - | – | |
| TMHMM | 186 | 205 | 20 | - | – | |
| Phobius | 189 | 205 | 17 | - | – | |
| Phobius | 206 | 210 | 5 | - | – | |
| TMHMM | 210 | 232 | 23 | - | – | |
| Phobius | 211 | 233 | 23 | - | – | |
| Phobius | 234 | 607 | 374 | - | – | |
| TMHMM | 288 | 310 | 23 | - | – | |
| TMHMM | 330 | 352 | 23 | - | – | |
| SUPERFAMILY | 380 | 606 | 227 | 1.59E-81 | ||
| Gene3D | 381 | 606 | 226 | 2.7E-218 | – | |
| CDD | 388 | 606 | 219 | 2.42885E-127 | – | |
| ProSiteProfiles | 388 | 607 | 220 | 20.655 | ||
| Pfam | 407 | 555 | 149 | 2.2E-32 | ||
| SMART | 415 | 601 | 187 | 1.2E-14 | ||
| ProSitePatterns | 527 | 541 | 15 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | ATPase activity | Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction. | ||
| Molecular function | ATPase activity, coupled to transmembrane movement of substances | Catalysis of the reaction: ATP + H2O = ADP + phosphate, to directly drive the active transport of a substance across a membrane. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi4g1v0315100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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