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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • cd03249
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 93 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 0.032s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0048519.1
n.a. PREDICTED: ABC transporter B family member 28-like [Glycine max] gi|356530907|ref|XP_003534020.1| chr0 16341719 16348251 -
1 domain prediction
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Lj0g3v0048519.2
n.a. PREDICTED: ABC transporter B family member 28-like [Cicer arietinum] gi|502165769|ref|XP_004513684.1| chr0 16341719 16348251 -
1 domain prediction
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Lj0g3v0066079.1
n.a. PREDICTED: ABC transporter B family member 4-like [Glycine max] gi|356499544|ref|XP_003518599.1| chr0 23131074 23138102 +
1 domain prediction
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Lj0g3v0068559.1
n.a. n.a. chr0 24564625 24570218 +
1 domain prediction
 –
Lj0g3v0285989.1
n.a. ABC transporter B family member [Medicago truncatula] gi|357463203|ref|XP_003601883.1| chr0 148513399 148520767 +
1 domain prediction
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Lj0g3v0304749.1
n.a. PREDICTED: ABC transporter B family member 2-like [Glycine max] gi|356497653|ref|XP_003517674.1| chr0 158742776 158749005 +
1 domain prediction
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Lj1g3v4591210.1
n.a. PREDICTED: ABC transporter B family member 1-like [Glycine max] gi|356503728|ref|XP_003520656.1| chr1 55004859 55005902 -
1 domain prediction
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Lj1g3v4591220.1
n.a. PREDICTED: ABC transporter B family member 1-like, partial [Cicer arietinum] gi|502111456|ref|XP_004494063.1| chr1 55006170 55013726 -
1 domain prediction
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Lj1g3v4830300.1
n.a. ATP-binding cassette protein [Lotus japonicus] gi|396080274|dbj|BAM33973.1| chr1 58339006 58347196 -
1 domain prediction
 –
Lj1g3v4830300.2
n.a. ATP-binding cassette protein [Lotus japonicus] gi|396080274|dbj|BAM33973.1| chr1 58348664 58354562 -
1 domain prediction
 –
Lj2g3v0451470.1
n.a. PREDICTED: ABC transporter B family member 28-like [Cicer arietinum] gi|502165769|ref|XP_004513684.1| chr2 6530159 6536664 +
1 domain prediction
 –
Lj2g3v0451470.2
n.a. PREDICTED: ABC transporter B family member 28-like [Cicer arietinum] gi|502165769|ref|XP_004513684.1| chr2 6530159 6536664 +
1 domain prediction
 –
Lj2g3v0855230.1
n.a. multidrug/pheromone exporter, MDR family, ABC transporter family [Populus trichocarpa] gi|224143631|ref|XP_002325023.1| chr2 13160526 13169142 +
1 domain prediction
 –
Lj2g3v1022420.1
n.a. PREDICTED: ABC transporter B family member 15-like [Cicer arietinum] gi|502090823|ref|XP_004489352.1| chr2 16070382 16073857 -
1 domain prediction
 –
Lj2g3v1022510.1
n.a. PREDICTED: ABC transporter B family member 15-like [Cicer arietinum] gi|502090823|ref|XP_004489352.1| chr2 16109441 16117977 -
1 domain prediction
 –
Lj2g3v1022510.2
n.a. PREDICTED: ABC transporter B family member 15-like [Cicer arietinum] gi|502090823|ref|XP_004489352.1| chr2 16109599 16118873 -
1 domain prediction
 –
Lj2g3v1055960.1
n.a. PREDICTED: ABC transporter B family member 19-like [Cicer arietinum] gi|502090922|ref|XP_004489384.1| chr2 16696058 16704393 -
1 domain prediction
 –
Lj3g3v1011060.1
n.a. ABC transporter B family member [Medicago truncatula] gi|357474799|ref|XP_003607685.1| chr3 13440468 13454026 +
1 domain prediction
 –
Lj3g3v2477640.1
n.a. ATP-binding cassette protein [Lotus japonicus] gi|396080274|dbj|BAM33973.1| chr3 30421082 30426720 +
1 domain prediction
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Lj3g3v2576200.1
n.a. PREDICTED: ABC transporter B family member 19-like [Cicer arietinum] gi|502156572|ref|XP_004510541.1| chr3 31603227 31611370 +
1 domain prediction
 –
Lj3g3v2576200.2
n.a. PREDICTED: ABC transporter B family member 19-like [Cicer arietinum] gi|502156572|ref|XP_004510541.1| chr3 31606669 31611370 +
1 domain prediction
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Lj4g3v1722980.2
n.a. PREDICTED: ABC transporter B family member 25-like [Glycine max] gi|356513473|ref|XP_003525438.1| chr4 24803332 24809054 -
1 domain prediction
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Lj4g3v2226770.1
n.a. PREDICTED: ABC transporter B family member 11-like [Glycine max] gi|356565525|ref|XP_003550990.1| chr4 30876643 30878010 -
1 domain prediction
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Lj4g3v2227820.1
n.a. ABC transporter B family member [Medicago truncatula] gi|357479199|ref|XP_003609885.1| chr4 30889551 30892439 -
1 domain prediction
 –
Lj4g3v2227830.1
n.a. ABC transporter B family member [Medicago truncatula] gi|357479199|ref|XP_003609885.1| chr4 30892388 30894392 -
1 domain prediction
 –
Lj4g3v2227930.1
n.a. PREDICTED: ABC transporter B family member 21-like isoform X2 [Cicer arietinum] gi|502150699|ref|XP_004508080.1| chr4 30906756 30912569 -
1 domain prediction
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Lj5g3v0240200.1
n.a. PREDICTED: ABC transporter B family member 13-like [Cicer arietinum] gi|502126388|ref|XP_004499289.1| chr5 1981611 1988950 +
1 domain prediction
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Lj5g3v2182120.1
n.a. PREDICTED: ABC transporter B family member 2-like [Glycine max] gi|356497653|ref|XP_003517674.1| chr5 31519530 31526360 -
1 domain prediction
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Lj6g3v1966330.1
n.a. PREDICTED: ABC transporter B family member 9-like [Cicer arietinum] gi|502078526|ref|XP_004485974.1| chr6 22498216 22502018 -
1 domain prediction
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LotjaGi1g1v0303000.1
n.a. ABC transporter ATP-binding protein; TAIR: AT3G28860.1 ATP binding cassette subfamily B19; Swiss-Prot: sp|Q9LJX0|AB19B_ARATH ABC transporter B family member 19; TrEMBL-Plants: tr|G7J9Q4|G7J9Q4_MEDTR ABC transporter B family protein; Found in the gene: LotjaGi1g1v0303000 LjG1.1_chr1 73857564 73874393 -
1 domain prediction
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LotjaGi1g1v0303000.3
n.a. ABC transporter ATP-binding protein; TAIR: AT3G28860.1 ATP binding cassette subfamily B19; Swiss-Prot: sp|Q9LJX0|AB19B_ARATH ABC transporter B family member 19; TrEMBL-Plants: tr|G7J9Q4|G7J9Q4_MEDTR ABC transporter B family protein; Found in the gene: LotjaGi1g1v0303000 LjG1.1_chr1 73860016 73874384 -
1 domain prediction
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LotjaGi1g1v0688600.1
n.a. ABC transporter ATP-binding protein; TAIR: AT2G36910.1 ATP binding cassette subfamily B1; Swiss-Prot: sp|Q9ZR72|AB1B_ARATH ABC transporter B family member 1; TrEMBL-Plants: tr|A0A0L9TFA1|A0A0L9TFA1_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0688600 LjG1.1_chr1 125595430 125604022 +
1 domain prediction
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LotjaGi1g1v0688600.2
n.a. ABC transporter ATP-binding protein; TAIR: AT2G36910.1 ATP binding cassette subfamily B1; Swiss-Prot: sp|Q9ZR72|AB1B_ARATH ABC transporter B family member 1; TrEMBL-Plants: tr|A0A0L9TFA1|A0A0L9TFA1_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0688600 LjG1.1_chr1 125595971 125603537 +
1 domain prediction
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LotjaGi1g1v0688600.3
n.a. ABC transporter ATP-binding protein; TAIR: AT2G36910.1 ATP binding cassette subfamily B1; Swiss-Prot: sp|Q9ZR72|AB1B_ARATH ABC transporter B family member 1; TrEMBL-Plants: tr|A0A0L9TFA1|A0A0L9TFA1_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0688600 LjG1.1_chr1 125595980 125603537 +
1 domain prediction
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LotjaGi1g1v0688600.4
n.a. ABC transporter ATP-binding protein; TAIR: AT2G36910.1 ATP binding cassette subfamily B1; Swiss-Prot: sp|Q9ZR72|AB1B_ARATH ABC transporter B family member 1; TrEMBL-Plants: tr|A0A0L9TFA1|A0A0L9TFA1_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0688600 LjG1.1_chr1 125595980 125603537 +
1 domain prediction
 –
LotjaGi1g1v0688600.5
n.a. ABC transporter ATP-binding protein; TAIR: AT2G36910.1 ATP binding cassette subfamily B1; Swiss-Prot: sp|Q9ZR72|AB1B_ARATH ABC transporter B family member 1; TrEMBL-Plants: tr|A0A0L9TFA1|A0A0L9TFA1_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0688600 LjG1.1_chr1 125595980 125603537 +
1 domain prediction
 –
LotjaGi1g1v0688600.6
n.a. ABC transporter ATP-binding protein; TAIR: AT2G36910.1 ATP binding cassette subfamily B1; Swiss-Prot: sp|Q9ZR72|AB1B_ARATH ABC transporter B family member 1; TrEMBL-Plants: tr|A0A0L9TFA1|A0A0L9TFA1_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0688600 LjG1.1_chr1 125595995 125603537 +
1 domain prediction
 –
LotjaGi1g1v0688600.7
n.a. ABC transporter ATP-binding protein; TAIR: AT2G36910.1 ATP binding cassette subfamily B1; Swiss-Prot: sp|Q9ZR72|AB1B_ARATH ABC transporter B family member 1; TrEMBL-Plants: tr|A0A0L9TFA1|A0A0L9TFA1_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0688600 LjG1.1_chr1 125601149 125603537 +
1 domain prediction
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LotjaGi1g1v0754800.1
n.a. ABC transporter B family protein; TAIR: AT1G02520.1 P-glycoprotein 11; Swiss-Prot: sp|Q9FWX7|AB11B_ARATH ABC transporter B family member 11; TrEMBL-Plants: tr|I7GUC2|I7GUC2_LOTJA ATP-binding cassette protein; Found in the gene: LotjaGi1g1v0754800 LjG1.1_chr1 132774713 132783949 -
1 domain prediction
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LotjaGi1g1v0754800.2
n.a. ABC transporter B family protein; TAIR: AT2G47000.1 ATP binding cassette subfamily B4; Swiss-Prot: sp|O80725|AB4B_ARATH ABC transporter B family member 4; TrEMBL-Plants: tr|I7GUC2|I7GUC2_LOTJA ATP-binding cassette protein; Found in the gene: LotjaGi1g1v0754800 LjG1.1_chr1 132774713 132794740 -
1 domain prediction
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LotjaGi1g1v0754800.3
n.a. ABC transporter B family protein; TAIR: AT2G47000.1 ATP binding cassette subfamily B4; Swiss-Prot: sp|O80725|AB4B_ARATH ABC transporter B family member 4; TrEMBL-Plants: tr|I7GUC2|I7GUC2_LOTJA ATP-binding cassette protein; Found in the gene: LotjaGi1g1v0754800 LjG1.1_chr1 132784886 132790488 -
1 domain prediction
 –
LotjaGi2g1v0150400.1
n.a. ABC transporter B family protein; TAIR: AT4G25450.3 non-intrinsic ABC protein 8; Swiss-Prot: sp|Q8LPQ6|AB28B_ARATH ABC transporter B family member 28; TrEMBL-Plants: tr|A0A0B2S4S1|A0A0B2S4S1_GLYSO ABC transporter B family member 28; Found in the gene: LotjaGi2g1v0150400 LjG1.1_chr2 54137142 54148680 +
1 domain prediction
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LotjaGi2g1v0150400.2
n.a. ABC transporter B family protein; TAIR: AT4G25450.1 non-intrinsic ABC protein 8; Swiss-Prot: sp|Q8LPQ6|AB28B_ARATH ABC transporter B family member 28; TrEMBL-Plants: tr|A0A0S3TB22|A0A0S3TB22_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0150400 LjG1.1_chr2 54137149 54148195 +
1 domain prediction
 –
LotjaGi2g1v0150400.3
n.a. ABC transporter B family protein; TAIR: AT4G25450.1 non-intrinsic ABC protein 8; Swiss-Prot: sp|Q8LPQ6|AB28B_ARATH ABC transporter B family member 28; TrEMBL-Plants: tr|K7LE00|K7LE00_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0150400 LjG1.1_chr2 54138585 54147756 +
1 domain prediction
 –
LotjaGi2g1v0150400.4
n.a. ABC transporter B family protein; TAIR: AT4G25450.3 non-intrinsic ABC protein 8; Swiss-Prot: sp|Q8LPQ6|AB28B_ARATH ABC transporter B family member 28; TrEMBL-Plants: tr|A0A0R0IFW8|A0A0R0IFW8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0150400 LjG1.1_chr2 54138950 54147756 +
1 domain prediction
 –
LotjaGi2g1v0224400.1
n.a. ABC transporter B family protein; TAIR: AT3G28345.1 ABC transporter family protein; Swiss-Prot: sp|Q9LHK4|AB8B_ARATH Putative ABC transporter B family member 8; TrEMBL-Plants: tr|A0A0B2QAY3|A0A0B2QAY3_GLYSO Putative ABC transporter B family member 8; Found in the gene: LotjaGi2g1v0224400 LjG1.1_chr2 68053597 68060335 -
1 domain prediction
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LotjaGi2g1v0253000.1
n.a. ABC transporter B family protein; TAIR: AT3G28345.1 ABC transporter family protein; Swiss-Prot: sp|Q9LHD1|AB15B_ARATH ABC transporter B family member 15; TrEMBL-Plants: tr|A0A0B2RQU4|A0A0B2RQU4_GLYSO ABC transporter B family member 15; Found in the gene: LotjaGi2g1v0253000 LjG1.1_chr2 71856256 71865197 -
1 domain prediction
 –
LotjaGi2g1v0253000.2
n.a. ABC transporter B family protein; TAIR: AT3G28345.1 ABC transporter family protein; Swiss-Prot: sp|Q9LHD1|AB15B_ARATH ABC transporter B family member 15; TrEMBL-Plants: tr|A0A0B2RQU4|A0A0B2RQU4_GLYSO ABC transporter B family member 15; Found in the gene: LotjaGi2g1v0253000 LjG1.1_chr2 71856737 71864315 -
1 domain prediction
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LotjaGi2g1v0253200.1
n.a. ABC transporter B family protein; TAIR: AT3G28345.1 ABC transporter family protein; Swiss-Prot: sp|Q9LHD1|AB15B_ARATH ABC transporter B family member 15; TrEMBL-Plants: tr|A0A0B2RQU4|A0A0B2RQU4_GLYSO ABC transporter B family member 15; Found in the gene: LotjaGi2g1v0253200 LjG1.1_chr2 71900751 71910585 -
1 domain prediction
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LotjaGi2g1v0253200.2
n.a. ABC transporter B family protein; TAIR: AT3G28345.1 ABC transporter family protein; Swiss-Prot: sp|Q9LHD1|AB15B_ARATH ABC transporter B family member 15; TrEMBL-Plants: tr|A0A0B2RQU4|A0A0B2RQU4_GLYSO ABC transporter B family member 15; Found in the gene: LotjaGi2g1v0253200 LjG1.1_chr2 71901390 71910253 -
1 domain prediction
 –