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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0343500 |
| Transcript ID | LotjaGi4g1v0343500.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cullin 1, putative; TAIR: AT4G02570.1 cullin 1; Swiss-Prot: sp|Q94AH6|CUL1_ARATH Cullin-1; TrEMBL-Plants: tr|I3SL73|I3SL73_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0343500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:72328323..72331676) extracted from Lotus japonicus Gifu genome v1.2.
CCGGAACTTCTGCTATTCATATTGTTAAGATTGGAAACTAACCCACTACTTTTTTTCTACCACTAACCGCCTCACTATGA ATAATCATGAACATCTGCATTTGACACTTTACCTGTTCCTATTATTATTGTTTTCATTCAATATCTTTGCTGCTGATTCA GTGAACATGGAGGATTGCAAGAATACCAGCCAGAGTTTTGAGGAAAGATGGCCTTTGCTTCAGACAGCTGTGGACAGACT CAACAACAAAATAGAAGGGACTGACAACTCAAGTTTCACATCTGAGGAGTACATGTCCTATTATAAGTATCCTTCACAAA TTGCTGATTATTTTGCTTTCATTCTTGTTGGACTTAAGTTGTTTCACTTCTGTACATGTCAATTTATTTAGGCATGACTT GTATCAAGTGCACAAATTCTGCTTACCCTTCTCTGTATCTTGTGGATGGGATTGGGGAGTGTTTTTACTGTCTAACTGTC ATGACTCATGAGAGACAGTTTTGTCCGAGTCAGGTATATCAAAATTCTGGTAGGACTAGCTCTCTCTCTGTTAGGTTCTT TCCATACACAAGATTCAAACTCGAGGGAACCTTATTTTAAAGAAATCAAACATGTACCATCTGAACCAACTATTTATTGT TTGTGCATGTGGAGTGTTTGGGAAATGCATAATTTGAACTACTAATTTATTCATAAATTATTTTTAGTCATGTAAAGTAT ATCTGGATTTATAGTAACTTGAGAGTATCTTCACCGGAAATAGTATACCTCCAGTCAATTTGGATGTTTACCATATAACA TTTGTCAAGAAGTTTTTGCATTCAGTTTAATTTTAGCAATGTTTAATTCAATAACAATCCTTATTTTCCTTCTCTATACT GATATCCTAAGAATTTCCGCCTTTAACAGTCTTGTATGGTCTTAACTTGGGTGTCTAGAACTGTTTATCTATTGTGTACA GACCACCCGCTGGGTGATGAAAATTCCAAGCTATTGTATGCCCAATATAAGAAGGTCTTTCAAGAATATATCAATGCAAC AGTAAGTCTAATTTTAATACTGTTTTTTACTAAAACTATTAATACTAACTTATATAACCTTAGTTGTTCAATCCTCACAT GCATCAAAAATTAGGCTTTTGTTAACTATGGAAGTTAAGATCCAATAGTATAGATATGAGCAATGTTAATGTTAGCGATA CACTTTTTTAACATACTTTTATACCCTCCCACCTTGCCAGATCAAGGGATATACCCTTCAACCAAGGTGCATGTCTCGGT AATGGTCGTGGAGACTACAAAAATGACAATAAAGAAGTGTGTTCTTAGCACTTGCATTTACATTATCATTGACATCTGAC ATGATTAAAATTAATAAGATTTTCTTATCACTAGGTTCTTCCATCTTTGCAAGGAAAGAAAGATGGACTTTTGTTGAGAG AACTACTCATAAGATGGTCAAATTACAAAATTATGACCAGGTGGCTCGTAAGATTCTTTCATTATCTTGACAGATACTAT ATCCCTAGATGGGAGCTTCCTTCTCTCCAAGAAACTAGCTTCTTATCCTTCTATGACTTGGTCTGTGATGAGATTCTTTA GAAAAGTTACACTTCAATTCTAATGTTATTTTGTTTTCCTTCATACCCTTTTTTTTAACTATTTGAGTTTACTTCTTTTT TGTGTCTCAGGTTCATGATAAGATCAACAAACAAGTCACCGATGCAATATTAGCTATGGTATTCTCTATTCCATTTTCAT ATGTACCATGTTTAAAATCTCATGTACTTGATTTATATTCGGTGAAAGAAAAAAAAATGGTGGACAGAAGCAACTTTCTT GTTTAATTCTATGATGAGGAACATGATAGTTGATTCTGTCCACCATGATTTTGGCTACCGTGTACAAATAGCCTTAATCT TTTCCACTGTTCCACTTGATGGACATGTCTTTCAAAATGCAGCCATAATTGTTATGAAACCTTAATTAGCCCTTGTCGGT TCCCCTGATTTTCATAGTAATGGCTTTTTTATCTTCATTTTCTGGTATCCAGATTGATGAGGAACATGCAGGAGAGAAGA TTGATAGAACATTGGTTAATAACACGCTGGCCATGTACTCGGAGATTGGAGATATCCTAAGAAAAAACAATGCAAACCAC TTCATAGAAAGAATGATTAAAGAGCATGCAGCATCCTACTATGATGAGGCTTCAAATTCGATAGCAAGTTCTTCCTTTAG GGATAACACACCAAAGGTGATTTCAGTTAAATTTGTTTTTTTTATTGAAGATAAACTTAAAATTACAGTAATTGAAAGGT CAATGTTTTATTGTTCTGAATGGCATGCTTGGTTTGAAACATGCATTTTGAAGCAATTCCCTTACATTTTTGCTACTCTC CACCTTGATTTGTACATTATTGTGGTTTTTTACCATGTATTCAAACGTGCACTTAATCTTGTGTGTTTGAAAACTAGACC GAGTTATAAGGATGACATTGTGTACCTCGCACCTTATTCTCAAAATTACTTTCCAGGCGATCGAATTTCTGTCATCACCC TTACGAAAATCTAACATGTTTAATACTAGACCAATATTTTGTTGGTGTAATCAAAATAAGTTTATTGAAGATTACACCTT TTTTTTTTACACAAATGTCAATTTTACATCATGGTAAAATAACACATTTGGTTGCAGGAAGAGAAATTGCATGACATTCC AACCCCTTCATCAAAGAAAATCAGGTTGGTAAGTTCTGATGGTGATGTGTTTGAAGTTGACTATGGGGTAGCACTCATGT CAAAAATCATTGAAGATGTTATTAAGGCCAAACCTGCTGGTGGCAGTGACAGCATTCTTGTCTCTACAGTGAGTAGCAAT ATTTTGGCCAAGGTCATTGAATACTGCAAGAAGCATACTAAAGCTTCCAATTTCAATCACAAGGAAGACATGTCAGGTGT TGACATCAAAAATTGGGATTCTAAATTTGTTGAGGTTGACTATCAAACTCTATTTGATCTTCATATGTCAGCAAACTACT TGAATATCAAGAGTCTGCTAGACCTGACAGGCACTACAATAGGAGACATGATAAAAGGGAAAACTCCAGAAGAAATACGC CAGATGTTCAACATTAAGGAAAACTAGGACCCATTTCATAGTGTCATGACATTTTCCAGCTTAATTTAATGCTATGGAAT ATTTCATGTTGATGTACCTGCTTGGTTCACAATTTCAAGGTGTGTCGTTGAAACAAGATATAAAACTGGTTTAATTTTGA AATTTCAACAGGGTTATTTATGTGCAGATAGCAATTTATATCAGCTTCCTCTAAAGCTGAAGTTGCAGAAGCTT
CDS sequence (LotjaGi4g1v0343500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTCTTAACTTGGGTGTCTAGAACTGTTTATCTATTGTGTACAGACCACCCGCTGGGTGATGAAAATTCCAAGCTATT GTATGCCCAATATAAGAAGGTCTTTCAAGAATATATCAATGCAACAGTTCTTCCATCTTTGCAAGGAAAGAAAGATGGAC TTTTGTTGAGAGAACTACTCATAAGATGGTCAAATTACAAAATTATGACCAGGTGGCTCGTAAGATTCTTTCATTATCTT GACAGATACTATATCCCTAGATGGGAGCTTCCTTCTCTCCAAGAAACTAGCTTCTTATCCTTCTATGACTTGGTTCATGA TAAGATCAACAAACAAGTCACCGATGCAATATTAGCTATGATTGATGAGGAACATGCAGGAGAGAAGATTGATAGAACAT TGGTTAATAACACGCTGGCCATGTACTCGGAGATTGGAGATATCCTAAGAAAAAACAATGCAAACCACTTCATAGAAAGA ATGATTAAAGAGCATGCAGCATCCTACTATGATGAGGCTTCAAATTCGATAGCAAGTTCTTCCTTTAGGGATAACACACC AAAGGAAGAGAAATTGCATGACATTCCAACCCCTTCATCAAAGAAAATCAGGTTGGTAAGTTCTGATGGTGATGTGTTTG AAGTTGACTATGGGGTAGCACTCATGTCAAAAATCATTGAAGATGTTATTAAGGCCAAACCTGCTGGTGGCAGTGACAGC ATTCTTGTCTCTACAGTGAGTAGCAATATTTTGGCCAAGGTCATTGAATACTGCAAGAAGCATACTAAAGCTTCCAATTT CAATCACAAGGAAGACATGTCAGGTGTTGACATCAAAAATTGGGATTCTAAATTTGTTGAGGTTGACTATCAAACTCTAT TTGATCTTCATATGTCAGCAAACTACTTGAATATCAAGAGTCTGCTAGACCTGACAGGCACTACAATAGGAGACATGATA AAAGGGAAAACTCCAGAAGAAATACGCCAGATGTTCAACATTAAGGAAAACTAG
Protein sequence (LotjaGi4g1v0343500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVLTWVSRTVYLLCTDHPLGDENSKLLYAQYKKVFQEYINATVLPSLQGKKDGLLLRELLIRWSNYKIMTRWLVRFFHYL DRYYIPRWELPSLQETSFLSFYDLVHDKINKQVTDAILAMIDEEHAGEKIDRTLVNNTLAMYSEIGDILRKNNANHFIER MIKEHAASYYDEASNSIASSSFRDNTPKEEKLHDIPTPSSKKIRLVSSDGDVFEVDYGVALMSKIIEDVIKAKPAGGSDS ILVSTVSSNILAKVIEYCKKHTKASNFNHKEDMSGVDIKNWDSKFVEVDYQTLFDLHMSANYLNIKSLLDLTGTTIGDMI KGKTPEEIRQMFNIKEN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 4 | 104 | 101 | 6.5E-23 | – | |
| PANTHER | 7 | 190 | 184 | 6.7E-60 | – | |
| PANTHER | 7 | 190 | 184 | 6.7E-60 | – | |
| SUPERFAMILY | 8 | 182 | 175 | 6.28E-32 | ||
| Pfam | 8 | 180 | 173 | 9.2E-23 | ||
| Gene3D | 105 | 192 | 88 | 1.7E-9 | – | |
| Gene3D | 199 | 337 | 139 | 1.4E-45 | – | |
| SMART | 200 | 305 | 106 | 3.8E-30 | ||
| Pfam | 201 | 262 | 62 | 5.5E-17 | ||
| SUPERFAMILY | 202 | 263 | 62 | 1.61E-13 | ||
| CDD | 202 | 320 | 119 | 3.86122E-36 | – | |
| SUPERFAMILY | 275 | 336 | 62 | 6.93E-21 | ||
| Pfam | 306 | 336 | 31 | 9.4E-11 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Ubiquitin-dependent protein catabolic process | The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein. | ||
| Molecular function | Ubiquitin protein ligase binding | Interacting selectively and non-covalently with a ubiquitin protein ligase enzyme, any of the E3 proteins. |
Expression pattern of LotjaGi4g1v0343500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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