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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0344200 |
| Transcript ID | LotjaGi4g1v0344200.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cullin 1, putative; TAIR: AT4G02570.1 cullin 1; Swiss-Prot: sp|Q94AH6|CUL1_ARATH Cullin-1; TrEMBL-Plants: tr|I3SKE1|I3SKE1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0344200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:72404321..72410983) extracted from Lotus japonicus Gifu genome v1.2.
GGATCAAAGCTTTATATTCCTATTCCAATTTCAGAAAGAAATTCAAGTTGTTAAACATTTCCGGTCATCTTCTCTCAATG AGGGTTTTCAAAAACTGTGGCTTTTCGCTCTTTCTCCATTACCCACCTTGCAAGCTTTCTCCTTTGTGCCTCAACGAATC GAACATGTTCGTATTCGTTCTTGCCTCCCTCGTCATCTGCCAGGTTTTACTTCTTTCTCTTTCGCACTCCTTCTAATTGT TCATGTCAATGATTTTAGGGGAATAGGGTATAATTTCATTCTGCAATTTTCGTTCAGTTTTAGTGCAATTTTCGTTCAGT TTTAGTGGCTAAATTGGTAACAATACCTTATGGGTGGATTTAAAGAGTGGTATCCTGCACTTCAGATTTGCACTGAACTT TTGCAAAGGAGGAAGAACTAAATGCTATAGTTGGGTGGTAATGGTGGGGTTTGGGGAGGAGAAGATGATGAATTTTTGGT TAAGATGATTTTTTTTTTGGTGTAAGACAGGTAATCGACCGCAGGAGGCAATCATGTTCAAGCTGGGAACATCCACATCT AGGTGGGGCTAACTCGACTGGCGGGTTTTTTTTCCATCCACAAGACTCGAACCGAGACATTGCTTAAGAGGAATCGAGCA TGTACTACTTGAATCAACCACCCGTTGGTAAGAAGATGAATTTCTAGGTAAGAAGTTTTTTTTTTGATAGGCAAATGTTA GTGGTTAGTTGTTAGTAATTACAAATGCTCCTCCTCAGGGTTTGAACCCTGGACCTCCATCTCCAACACCTATTTCTAGG TAAGATAAATTTCTGAAATTAGGAATAGGAATTAATGCTGTGGAGAATAGATTATGTTAATTAAAATGATGAACTTTTGG GTAAGATGATGAATTTCTGAAATTACGAATTAGTGATTTTTTTGGTGGAGGAGAAAATATAATTTTATAGGTTAGATGAG TTTTTGGCCCCTCTTAAATTTAAAAAGTTTTGGTTTTAGTCCTCAACTTATGCATCGCCCATCATGTTAGCATGCCACAT AACTTTTGCCTGGACATGTAAGCAAGTCTCCATAGCTCATTCTCAGACGAGGACTAAAACCAAGGTGTTTATCCAAATGT AGGGGTGTTTTTGCAACTTTACTCCGTCTATGGCTTAAAATAAATCTGACTCATTTTACACGGACTAAAAACATTATTAA CCCAAAAAAAACATTTATAGAATAATGGATGAGATGAATGAACTTTGTGGTTACCTCCTTAGGCATCCCCCTATTTCCAT CGCTCGAGTATTGAAACTCGACATTTATTTTGATTCAGTTATCCTAGAGTCGTACTCGTACGGGCTTGATGATGGTTCAT CTATTATACTTAGTGTGTCTCTAATTATAAGAACCTTAAAAACATAATCAACCCAAAAAAATATTTATAGAATAATGGAT GACCAGATGAATGAAGTTTGTGGTTACCTCCTATGGCAGCCCCCTCATTTCCATCACTCGAGCATTGAAACTAATTTTGA TGCAATTCTCCTAGAGTCGTACGGTCTGGATGATGGTTCATCTATTATATTTGTGTGTCTCTAATTATAAGACCCTTAAA AACATAATCAACCCAAAAAAATATTTATAGAATAATGGATGCTCAGATGAATGAACTTTGTGGTTACCTCCTATGGCAGC CCCCTCATTTCCATCACTCGGGCATTGAAACTCGACATTAATTTTGATTCAATTCTCCTAGAGTCGTACGGTCTTGATGA TGGTTCATCTATTATACTGTCTTTCACTAATTATAAGACCCTTTAAAGACATTTTTGGTGTCCCTTAATACAAAACCCTC TACTAAATTTCGGAAAAAGATTATTATCCTTTTCCCTATTATACTTTTGTTATTCCAAAATTTTGATTACCGCTAGCAAT TAATTCTTTTCCATGTTACCTAATACATTAATATCTGGTAAATATAGAAGATTGTATGAACTTTTTAAAACCAATACATT AATTAGGCTCATTACATCTTTTCTTAATAAGCATAATTGTCTAAAGAGGTTCTTATAATTAGGGACAAACACTAATTTTT TGGGTTTGTCATTCCATTGATGGGTGGATTCCATTTTTATAAAACGGATTAAATGGGCCAATTGATAAGTGTTTTGGGCC AATTAAGTTACTTAAGGCCCACGATCAACCAAAACTAGGGTTCCATTACATCATATATATGGCCAAAAATCCTCTCCTCT CTTGAACCTGGTTGCGCCGTCTATCAAGCTCCTCTCTTGAACCTGGTTGCGCCGAGCTCAGTTATTCAGTTAGAGAGGTA AACAATTCTGACTCTCATTGTGGCTTCAAGAGTAGTACAATTTATATTAATCTAGCCATTGTTCTAAATCCTGTTATAGA TCTAGTAAATTTTATTTAATCATGATCAACATATAATTGAGAACATGGCTGGGAAACTCGTTTCGATCTGGTTAGGTGAC TAGAATAAAAGTGAAGGATGGTGTAGAAATTGACACCAGTTAGGACCATACACACATATATGTATGTAAATGGTGTTGAA TTTTCAAATCAAACCTGGCTATAGCATTTATTTTTATGGGGATGAAATTGACCAGAACTTATGCCATTCATATGCTGAAG TTTGGAAACAAAGCCGCTCTCTCTTTTCTTCTGCCACTATGATTGATCTGAGTTTGTGCCTGTTATTATTTCTTTAATTC AGCATTTTTGCTCCTGATTCAGTGAACATGGACAAATGCGAGAAAATCAGCAACAGTTTTGAGGAAGGGTGGCCTTTACT CGAGAAAGCTGTGGACAGCCTCATTAACCAAATAGAAGAGGCAGCCAACTTAAGGTTACCAGTTCCAGATTACATGTCCT GTTATACGTATCCTTCGGAAACCTTGCTGTTTACTTTTCTTTAATTTTGGTTTGCCTTAAAAAAATTCCAGTTTTATACA TTGTTTTCTTGTGTTCATGTCACTTTATTTAGGCATGGCTTTCATCAAGAGCTAAAAATCTGCTTACCCCCTTCTCTGTG TCTTGTGCTTGAAGAGAGTCTGAAAAATGCATTACTTGAAGTCAAAATTTATTCCTAAATTCTCTTCTGGTCATGTAGAT TCTATCTGGTTTTATAGTAGCCTGAGGGTATCTTTACTGGAAACATCTCCAATCAATTTTGATGTTTCCAGTATTACATT TGCCAATAACTTTTGCATTCAATTTAATTTCAGCAATGTTTAATTCAATGCCACTCCTTATTTTCCTTCTCTATTGACTT GATAAATTAATTGAGCTTTAAAAAAGGACTTATTAATAAAATTGTAAACGTGCATTGAGAATCTAATATCCTAAAAATCC CCCCCCCCCCCCTATACTGTCTTGTATGGTCTTTACTTAACTTGGGTATCTAGAACTGTTTATAACATGTGTACAGGCCA ACTGGGTGATCAGAATTGCAAGCTGCTCTATGGCAGATATAAGGAGGTCTTTGAGACATATATCAATTCCACAGTAAGTC TGATACTTAATCCTAATTCCTATCTGAACCTTAGTTGTTCACTTACTGACATGCATCAACCACTAGGATTTTGTTTACAT GGAAGTTCTAGGCTTAATAGTATATACTTAATAGCAATACACACTTTTCAGTATGTGCTTAGAAGTCTCACATTGACTAG AGATATGGCCACATTTGTTTCCAAAGGGTAGAGCAACCCTCACTCCTAAGCTAGCTTTTAAGGTAGAGTTAGGCCTAACC CGAATTCTTATAATATGCTCTACGATTGGTTCCAATTTTAAAAAATAACACATTTTATCTAGTAAATGGGTCTCTTTTTA AAAGTACATTAACTTTTTAAAATATGGACTGATCATAAAAAGTGTGTAAAGAGTGAATCAATAAAAGTGTGTTGTTAGCA TTACTTGCACTTACATTAGCATTGACATCATTAATATTAATAAGAATTTCTTAACCTCAGGTCCTTACATCTTTGCAAGG AAAGAAAGATGGACTGTTGTTGATTGAACTGCTGAGAAAATGGTCAAATTACAAACTTATGACCAAGTGGCTCTCATTGT CCTTCTGTTATCTTAACAGATACTACATCCCACACAAGAAGCTTACTTCTACTGAAGAAACTAGCTTCTTAATGTTCTAT GACTTGGTTGGTGAAGAGATTCTTAGAAAAGTTACATTGAGACTTTCTGAATTCTGATGTTAATTGGTTTTCCTTCATTC CATTTTCTTAACTCTTGAGTTTACTTCTTTTATGTGTCTCAGCTACATAAGAAGATCAATGTACAAGTTGCGGATGCTGT AACAGCTATGGTATTCTTCTGCTTTCCATTTTCATATATATCATCTTTAAAAGCATATGTACTTGATTTATCTTCTTGGG GAGCACTGCGACTCTGCTGTTGTTCATTGTTAACTTCCTTCAGCATCATACCATGCAATTTAATGGAGCGTTGCAATTTT AAAATTTAACTGAAAGAAATCAAATTGCATTGCAAACAAGAGATGTTTGGCTTTGTTTGTCAGCATAATTAATGATTTAA TCCTGTTTAGATTGACAGATCTAGAGATGTTTGGCATTGTTTTTCATATATCTACTTTTGATGTTCCATTTTTATTGGAA TAAAAGGTTTTACTATATGTGAAATTCTTTAATGCACCTTAATGATGCTTTGATGTAATTTTATGATTATTAAGTAGTTG AATGGCAGTAATTTAGTGTGTGTTTGTATATCAACTGAGTGCAACGTGAATAGACTTTCCCCACAATTCACAAGAAGAGT TTCATTCACTTTTTTTCTTGAAGTTTGTACTAACATCCCCTTGCTTTGAACTCGACATAGATCCACATTGAAGCTAACGT GTCAAAATCTTACTTTTCCAATCCATGTTAAATTCTACGTGGCAAATTCTAGCTTCTTCATTAGTACTTTGATCTAATCT TTGTCGGTTCCCCTGATTTTCACTGTAATGGCTCTTTGATTTTCATTTCTTGGTATCCAGATTGATCAGGGACGTTCTGG AGAGCAGATTGACCGAACACTGGTTAATAACACATTGGCCATGTACTCGGAGATTGGAGTTATCCTAAGAATAAACAATG CAAATGACTTTTTAGAAAGCTTGATTGGAGAGCGTGTTCATCGTCTGCCTCACCCTCGAATTCTGTGCAAGGTTTGTTAT CCTTCATAGATCACAACTATTACATTATGTACATTGGTTATCCTTCATAAAGTATCTAGTAGGATTAATTGCATCTGCTA CATCATAATTGAACGAAGCTACGAAGTAGCCACCTTGCCGTTTTAGTCTTTTGTCTTGGAAAATTAGACCAAGTCATTAC TATTACATTATGTACTTGACACCTTGTTTCCAATTTGAGATCTTCGTAGTCTGGCACTAAATTTGCTTTTACCTGACAAT ATTCATAGATCACAACCTTCTTAAAAGGAGAAAATGTCAAATTTATTTCCTGTTTCAAATCTGGGGTTGTCTAACCTGTC CCAAGTGGTAGTGCATGTCTGGATACACGGTGGAAAACCAGTGTGACTAAAATCATGGTGAATTATCGCAAAAGCTAAGG AAAGTTACTTTTCACCGTGATTTCCACTGCGTGTCCAAACATGGACTCATTCTAGGTGAACCAATAGGATCACAACATAA ATGCATTGAAAATTACATCAGCTTTTTTACATAAATGAAAATTTTACATAATGGTTAATAGCATGTTTGGATCACTTTTA CTTTCTTCAGAATCAATTCTGAAATTCATAAGCTACTCACATAAGCTTCTTCCTAGAATTGATTCTGACATAAAATAATC AATTGTGTTAGAATTTCCAAACATGCACTAAATAACTTATTTGGTTGCAGAAAGAGATATTCCCTGGCATTCTAACCCCT TCATCAAAGAAAATCAGGTTGGTAAGTTCTGATGGAGATGTGTTTGAAGTTGACTATGGTGTGGGTGTGGGACTCATGTC AAAAACAATTGAAGATGCTATCAAGACCAACCCTGCCGGTGGCACTGAAAGCATTCTTGTTTATCCAGTGAGTAGCAAAA TCTTGACCAAGGTAATTGAAATCTGCAAGAAGTACACTGAAGCTTCTGATTCCAATAACAAGGAAGGCATGTCTGGTGTT GATATCAAAGACTGGGATGCTGAATTTATTGATGTTGACAATAACACTCTATTGCATCTTCATATTTGTGCAAAATTCTT GAACATCAAGAGTCTGCTACACCTGACAAACAATGCAATAGCAGACAAGGTGAAAGGGAAGGCTCCAATGGTAATTCGCC AGATGTTTAACATTAAGGATAACGTCTAGGACCCATTTCAATTGTCTTCTCATGAGATTTTCAGCTAAATTTAAAGCTTT GAGTTTATTTTATGTTTAGGGTCTCTATGGGTTTACTGTTGAATAAAGTTATGTTATGTAAACTTATACAATTATGTTTG ATAGAATTTAGTTCAAAAGAACTAATTTGTGTTTGGTAATGATGTGTAGAAGTAAGTTTTGAAAAAAAAATGTTGTTTTG ATGGAATTAAGTTAAATCACTTTTTGGGGATAAATTACTGAAATGGATACTTTTTCTACACAAGTTTTTCAAAGTTTGAA AGCGCATGTTGTGTTGTATGGTA
CDS sequence (LotjaGi4g1v0344200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACAAATGCGAGAAAATCAGCAACAGTTTTGAGGAAGGGTGGCCTTTACTCGAGAAAGCTGTGGACAGCCTCATTAA CCAAATAGAAGAGGCAGCCAACTTAAGGTTACCAGTTCCAGATTACATGTCCTGTTATACAACTGTTTATAACATGTGTA CAGGCCAACTGGGTGATCAGAATTGCAAGCTGCTCTATGGCAGATATAAGGAGGTCTTTGAGACATATATCAATTCCACA GTCCTTACATCTTTGCAAGGAAAGAAAGATGGACTGTTGTTGATTGAACTGCTGAGAAAATGGTCAAATTACAAACTTAT GACCAAGTGGCTCTCATTGTCCTTCTGTTATCTTAACAGATACTACATCCCACACAAGAAGCTTACTTCTACTGAAGAAA CTAGCTTCTTAATGTTCTATGACTTGCTACATAAGAAGATCAATGTACAAGTTGCGGATGCTGTAACAGCTATGATTGAT CAGGGACGTTCTGGAGAGCAGATTGACCGAACACTGGTTAATAACACATTGGCCATGTACTCGGAGATTGGAGTTATCCT AAGAATAAACAATGCAAATGACTTTTTAGAAAGCTTGATTGGAGAGCGTGTTCATCGTCTGCCTCACCCTCGAATTCTGT GCAAGAAAGAGATATTCCCTGGCATTCTAACCCCTTCATCAAAGAAAATCAGGTTGGTAAGTTCTGATGGAGATGTGTTT GAAGTTGACTATGGTGTGGGTGTGGGACTCATGTCAAAAACAATTGAAGATGCTATCAAGACCAACCCTGCCGGTGGCAC TGAAAGCATTCTTGTTTATCCAGTGAGTAGCAAAATCTTGACCAAGGTAATTGAAATCTGCAAGAAGTACACTGAAGCTT CTGATTCCAATAACAAGGAAGGCATGTCTGGTGTTGATATCAAAGACTGGGATGCTGAATTTATTGATGTTGACAATAAC ACTCTATTGCATCTTCATATTTGTGCAAAATTCTTGAACATCAAGAGTCTGCTACACCTGACAAACAATGCAATAGCAGA CAAGGTGAAAGGGAAGGCTCCAATGGTAATTCGCCAGATGTTTAACATTAAGGATAACGTCTAG
Protein sequence (LotjaGi4g1v0344200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDKCEKISNSFEEGWPLLEKAVDSLINQIEEAANLRLPVPDYMSCYTTVYNMCTGQLGDQNCKLLYGRYKEVFETYINST VLTSLQGKKDGLLLIELLRKWSNYKLMTKWLSLSFCYLNRYYIPHKKLTSTEETSFLMFYDLLHKKINVQVADAVTAMID QGRSGEQIDRTLVNNTLAMYSEIGVILRINNANDFLESLIGERVHRLPHPRILCKKEIFPGILTPSSKKIRLVSSDGDVF EVDYGVGVGLMSKTIEDAIKTNPAGGTESILVYPVSSKILTKVIEICKKYTEASDSNNKEGMSGVDIKDWDAEFIDVDNN TLLHLHICAKFLNIKSLLHLTNNAIADKVKGKAPMVIRQMFNIKDNV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 3 | 141 | 139 | 2.6E-30 | – | |
| PANTHER | 8 | 201 | 194 | 3.9E-52 | – | |
| PANTHER | 8 | 201 | 194 | 3.9E-52 | – | |
| SUPERFAMILY | 9 | 190 | 182 | 1.12E-34 | ||
| Pfam | 15 | 184 | 170 | 2.7E-23 | ||
| Gene3D | 226 | 367 | 142 | 6.0E-35 | – | |
| SMART | 227 | 334 | 108 | 2.1E-18 | ||
| Pfam | 228 | 291 | 64 | 2.3E-9 | ||
| SUPERFAMILY | 229 | 291 | 63 | 3.02E-7 | ||
| CDD | 229 | 347 | 119 | 2.72453E-26 | – | |
| SUPERFAMILY | 304 | 366 | 63 | 1.7E-16 | ||
| Pfam | 335 | 365 | 31 | 6.2E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Ubiquitin-dependent protein catabolic process | The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein. | ||
| Molecular function | Ubiquitin protein ligase binding | Interacting selectively and non-covalently with a ubiquitin protein ligase enzyme, any of the E3 proteins. |
Expression pattern of LotjaGi4g1v0344200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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