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LotjaGi4g1v0344200.2

Overview

Field Value
Gene ID LotjaGi4g1v0344200
Transcript ID LotjaGi4g1v0344200.2
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Cullin 1, putative; TAIR: AT4G02570.1 cullin 1; Swiss-Prot: sp|Q94AH6|CUL1_ARATH Cullin-1; TrEMBL-Plants: tr|I3SKE1|I3SKE1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0344200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:72404347..72410887) extracted from Lotus japonicus Gifu genome v1.2.

AATTTCAGAAAGAAATTCAAGTTGTTAAACATTTCCGGTCATCTTCTCTCAATGAGGGTTTTCAAAAACTGTGGCTTTTC GCTCTTTCTCCATTACCCACCTTGCAAGCTTTCTCCTTTGTGCCTCAACGAATCGAACATGTTCGTATTCGTTCTTGCCT CCCTCGTCATCTGCCAGGTTTTACTTCTTTCTCTTTCGCACTCCTTCTAATTGTTCATGTCAATGATTTTAGGGGAATAG GGTATAATTTCATTCTGCAATTTTCGTTCAGTTTTAGTGCAATTTTCGTTCAGTTTTAGTGGCTAAATTGGTAACAATAC CTTATGGGTGGATTTAAAGAGTGGTATCCTGCACTTCAGATTTGCACTGAACTTTTGCAAAGGAGGAAGAACTAAATGCT ATAGTTGGGTGGTAATGGTGGGGTTTGGGGAGGAGAAGATGATGAATTTTTGGTTAAGATGATTTTTTTTTTGGTGTAAG ACAGGTAATCGACCGCAGGAGGCAATCATGTTCAAGCTGGGAACATCCACATCTAGGTGGGGCTAACTCGACTGGCGGGT TTTTTTTCCATCCACAAGACTCGAACCGAGACATTGCTTAAGAGGAATCGAGCATGTACTACTTGAATCAACCACCCGTT GGTAAGAAGATGAATTTCTAGGTAAGAAGTTTTTTTTTTGATAGGCAAATGTTAGTGGTTAGTTGTTAGTAATTACAAAT GCTCCTCCTCAGGGTTTGAACCCTGGACCTCCATCTCCAACACCTATTTCTAGGTAAGATAAATTTCTGAAATTAGGAAT AGGAATTAATGCTGTGGAGAATAGATTATGTTAATTAAAATGATGAACTTTTGGGTAAGATGATGAATTTCTGAAATTAC GAATTAGTGATTTTTTTGGTGGAGGAGAAAATATAATTTTATAGGTTAGATGAGTTTTTGGCCCCTCTTAAATTTAAAAA GTTTTGGTTTTAGTCCTCAACTTATGCATCGCCCATCATGTTAGCATGCCACATAACTTTTGCCTGGACATGTAAGCAAG TCTCCATAGCTCATTCTCAGACGAGGACTAAAACCAAGGTGTTTATCCAAATGTAGGGGTGTTTTTGCAACTTTACTCCG TCTATGGCTTAAAATAAATCTGACTCATTTTACACGGACTAAAAACATTATTAACCCAAAAAAAACATTTATAGAATAAT GGATGAGATGAATGAACTTTGTGGTTACCTCCTTAGGCATCCCCCTATTTCCATCGCTCGAGTATTGAAACTCGACATTT ATTTTGATTCAGTTATCCTAGAGTCGTACTCGTACGGGCTTGATGATGGTTCATCTATTATACTTAGTGTGTCTCTAATT ATAAGAACCTTAAAAACATAATCAACCCAAAAAAATATTTATAGAATAATGGATGACCAGATGAATGAAGTTTGTGGTTA CCTCCTATGGCAGCCCCCTCATTTCCATCACTCGAGCATTGAAACTAATTTTGATGCAATTCTCCTAGAGTCGTACGGTC TGGATGATGGTTCATCTATTATATTTGTGTGTCTCTAATTATAAGACCCTTAAAAACATAATCAACCCAAAAAAATATTT ATAGAATAATGGATGCTCAGATGAATGAACTTTGTGGTTACCTCCTATGGCAGCCCCCTCATTTCCATCACTCGGGCATT GAAACTCGACATTAATTTTGATTCAATTCTCCTAGAGTCGTACGGTCTTGATGATGGTTCATCTATTATACTGTCTTTCA CTAATTATAAGACCCTTTAAAGACATTTTTGGTGTCCCTTAATACAAAACCCTCTACTAAATTTCGGAAAAAGATTATTA TCCTTTTCCCTATTATACTTTTGTTATTCCAAAATTTTGATTACCGCTAGCAATTAATTCTTTTCCATGTTACCTAATAC ATTAATATCTGGTAAATATAGAAGATTGTATGAACTTTTTAAAACCAATACATTAATTAGGCTCATTACATCTTTTCTTA ATAAGCATAATTGTCTAAAGAGGTTCTTATAATTAGGGACAAACACTAATTTTTTGGGTTTGTCATTCCATTGATGGGTG GATTCCATTTTTATAAAACGGATTAAATGGGCCAATTGATAAGTGTTTTGGGCCAATTAAGTTACTTAAGGCCCACGATC AACCAAAACTAGGGTTCCATTACATCATATATATGGCCAAAAATCCTCTCCTCTCTTGAACCTGGTTGCGCCGTCTATCA AGCTCCTCTCTTGAACCTGGTTGCGCCGAGCTCAGTTATTCAGTTAGAGAGGTAAACAATTCTGACTCTCATTGTGGCTT CAAGAGTAGTACAATTTATATTAATCTAGCCATTGTTCTAAATCCTGTTATAGATCTAGTAAATTTTATTTAATCATGAT CAACATATAATTGAGAACATGGCTGGGAAACTCGTTTCGATCTGGTTAGGTGACTAGAATAAAAGTGAAGGATGGTGTAG AAATTGACACCAGTTAGGACCATACACACATATATGTATGTAAATGGTGTTGAATTTTCAAATCAAACCTGGCTATAGCA TTTATTTTTATGGGGATGAAATTGACCAGAACTTATGCCATTCATATGCTGAAGTTTGGAAACAAAGCCGCTCTCTCTTT TCTTCTGCCACTATGATTGATCTGAGTTTGTGCCTGTTATTATTTCTTTAATTCAGCATTTTTGCTCCTGATTCAGTGAA CATGGACAAATGCGAGAAAATCAGCAACAGTTTTGAGGAAGGGTGGCCTTTACTCGAGAAAGCTGTGGACAGCCTCATTA ACCAAATAGAAGAGGCAGCCAACTTAAGGTTACCAGTTCCAGATTACATGTCCTGTTATACGTATCCTTCGGAAACCTTG CTGTTTACTTTTCTTTAATTTTGGTTTGCCTTAAAAAAATTCCAGTTTTATACATTGTTTTCTTGTGTTCATGTCACTTT ATTTAGGCATGGCTTTCATCAAGAGCTAAAAATCTGCTTACCCCCTTCTCTGTGTCTTGTGCTTGAAGAGAGTCTGAAAA ATGCATTACTTGAAGTCAAAATTTATTCCTAAATTCTCTTCTGGTCATGTAGATTCTATCTGGTTTTATAGTAGCCTGAG GGTATCTTTACTGGAAACATCTCCAATCAATTTTGATGTTTCCAGTATTACATTTGCCAATAACTTTTGCATTCAATTTA ATTTCAGCAATGTTTAATTCAATGCCACTCCTTATTTTCCTTCTCTATTGACTTGATAAATTAATTGAGCTTTAAAAAAG GACTTATTAATAAAATTGTAAACGTGCATTGAGAATCTAATATCCTAAAAATCCCCCCCCCCCCCCTATACTGTCTTGTA TGGTCTTTACTTAACTTGGGTATCTAGAACTGTTTATAACATGTGTACAGGCCAACTGGGTGATCAGAATTGCAAGCTGC TCTATGGCAGATATAAGGAGGTCTTTGAGACATATATCAATTCCACAGTAAGTCTGATACTTAATCCTAATTCCTATCTG AACCTTAGTTGTTCACTTACTGACATGCATCAACCACTAGGATTTTGTTTACATGGAAGTTCTAGGCTTAATAGTATATA CTTAATAGCAATACACACTTTTCAGTATGTGCTTAGAAGTCTCACATTGACTAGAGATATGGCCACATTTGTTTCCAAAG GGTAGAGCAACCCTCACTCCTAAGCTAGCTTTTAAGGTAGAGTTAGGCCTAACCCGAATTCTTATAATATGCTCTACGAT TGGTTCCAATTTTAAAAAATAACACATTTTATCTAGTAAATGGGTCTCTTTTTAAAAGTACATTAACTTTTTAAAATATG GACTGATCATAAAAAGTGTGTAAAGAGTGAATCAATAAAAGTGTGTTGTTAGCATTACTTGCACTTACATTAGCATTGAC ATCATTAATATTAATAAGAATTTCTTAACCTCAGGTCCTTACATCTTTGCAAGGAAAGAAAGATGGACTGTTGTTGATTG AACTGCTGAGAAAATGGTCAAATTACAAACTTATGACCAAGTGGCTCTCATTGTCCTTCTGTTATCTTAACAGATACTAC ATCCCACACAAGAAGCTTACTTCTACTGAAGAAACTAGCTTCTTAATGTTCTATGACTTGGTTGGTGAAGAGATTCTTAG AAAAGTTACATTGAGACTTTCTGAATTCTGATGTTAATTGGTTTTCCTTCATTCCATTTTCTTAACTCTTGAGTTTACTT CTTTTATGTGTCTCAGCTACATAAGAAGATCAATGTACAAGTTGCGGATGCTGTAACAGCTATGGTATTCTTCTGCTTTC CATTTTCATATATATCATCTTTAAAAGCATATGTACTTGATTTATCTTCTTGGGGAGCACTGCGACTCTGCTGTTGTTCA TTGTTAACTTCCTTCAGCATCATACCATGCAATTTAATGGAGCGTTGCAATTTTAAAATTTAACTGAAAGAAATCAAATT GCATTGCAAACAAGAGATGTTTGGCTTTGTTTGTCAGCATAATTAATGATTTAATCCTGTTTAGATTGACAGATCTAGAG ATGTTTGGCATTGTTTTTCATATATCTACTTTTGATGTTCCATTTTTATTGGAATAAAAGGTTTTACTATATGTGAAATT CTTTAATGCACCTTAATGATGCTTTGATGTAATTTTATGATTATTAAGTAGTTGAATGGCAGTAATTTAGTGTGTGTTTG TATATCAACTGAGTGCAACGTGAATAGACTTTCCCCACAATTCACAAGAAGAGTTTCATTCACTTTTTTTCTTGAAGTTT GTACTAACATCCCCTTGCTTTGAACTCGACATAGATCCACATTGAAGCTAACGTGTCAAAATCTTACTTTTCCAATCCAT GTTAAATTCTACGTGGCAAATTCTAGCTTCTTCATTAGTACTTTGATCTAATCTTTGTCGGTTCCCCTGATTTTCACTGT AATGGCTCTTTGATTTTCATTTCTTGGTATCCAGATTGATCAGGGACGTTCTGGAGAGCAGATTGACCGAACACTGGTTA ATAACACATTGGCCATGTACTCGGAGATTGGAGTTATCCTAAGAATAAACAATGCAAATGACTTTTTAGAAAGCTTGATT GGAGAGCGTGTTCATCGTCTGCCTCACCCTCGAATTCTGTGCAAGGTTTGTTATCCTTCATAGATCACAACTATTACATT ATGTACATTGGTTATCCTTCATAAAGTATCTAGTAGGATTAATTGCATCTGCTACATCATAATTGAACGAAGCTACGAAG TAGCCACCTTGCCGTTTTAGTCTTTTGTCTTGGAAAATTAGACCAAGTCATTACTATTACATTATGTACTTGACACCTTG TTTCCAATTTGAGATCTTCGTAGTCTGGCACTAAATTTGCTTTTACCTGACAATATTCATAGATCACAACCTTCTTAAAA GGAGAAAATGTCAAATTTATTTCCTGTTTCAAATCTGGGGTTGTCTAACCTGTCCCAAGTGGTAGTGCATGTCTGGATAC ACGGTGGAAAACCAGTGTGACTAAAATCATGGTGAATTATCGCAAAAGCTAAGGAAAGTTACTTTTCACCGTGATTTCCA CTGCGTGTCCAAACATGGACTCATTCTAGGTGAACCAATAGGATCACAACATAAATGCATTGAAAATTACATCAGCTTTT TTACATAAATGAAAATTTTACATAATGGTTAATAGCATGTTTGGATCACTTTTACTTTCTTCAGAATCAATTCTGAAATT CATAAGCTACTCACATAAGCTTCTTCCTAGAATTGATTCTGACATAAAATAATCAATTGTGTTAGAATTTCCAAACATGC ACTAAATAACTTATTTGGTTGCAGAAAGAGATATTCCCTGGCATTCTAACCCCTTCATCAAAGAAAATCAGGTTGGTAAG TTCTGATGGAGATGTGTTTGAAGTTGACTATGGTGTGGGTGTGGGACTCATGTCAAAAACAATTGAAGATGCTATCAAGA CCAACCCTGCCGGTGGCACTGAAAGCATTCTTGTTTATCCAGTGAGTAGCAAAATCTTGACCAAGGTAATTGAAATCTGC AAGAAGTACACTGAAGCTTCTGATTCCAATAACAAGGAAGGCATGTCTGGTGTTGATATCAAAGACTGGGATGCTGAATT TATTGATGTTGACAATAACACTCTATTGCATCTTCATATTTGTGCAAAATTCTTGAACATCAAGAGTCTGCTACACCTGA CAAACAATGCAATAGCAGACAAGGTGAAAGGGAAGGCTCCAATGGTAATTCGCCAGATGTTTAACATTAAGGATAACGTC TAGGACCCATTTCAATTGTCTTCTCATGAGATTTTCAGCTAAATTTAAAGCTTTGAGTTTATTTTATGTTTAGGGTCTCT ATGGGTTTACTGTTGAATAAAGTTATGTTATGTAAACTTATACAATTATGTTTGATAGAATTTAGTTCAAAAGAACTAAT TTGTGTTTGGTAATGATGTGTAGAAGTAAGTTTTGAAAAAAAAATGTTGTTTTGATGGAAT
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0344200.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTGTACAGGCCAACTGGGTGATCAGAATTGCAAGCTGCTCTATGGCAGATATAAGGAGGTCTTTGAGACATATATCAA TTCCACAGTCCTTACATCTTTGCAAGGAAAGAAAGATGGACTGTTGTTGATTGAACTGCTGAGAAAATGGTCAAATTACA AACTTATGACCAAGTGGCTCTCATTGTCCTTCTGTTATCTTAACAGATACTACATCCCACACAAGAAGCTTACTTCTACT GAAGAAACTAGCTTCTTAATGTTCTATGACTTGCTACATAAGAAGATCAATGTACAAGTTGCGGATGCTGTAACAGCTAT GATTGATCAGGGACGTTCTGGAGAGCAGATTGACCGAACACTGGTTAATAACACATTGGCCATGTACTCGGAGATTGGAG TTATCCTAAGAATAAACAATGCAAATGACTTTTTAGAAAGCTTGATTGGAGAGCGTGTTCATCGTCTGCCTCACCCTCGA ATTCTGTGCAAGAAAGAGATATTCCCTGGCATTCTAACCCCTTCATCAAAGAAAATCAGGTTGGTAAGTTCTGATGGAGA TGTGTTTGAAGTTGACTATGGTGTGGGTGTGGGACTCATGTCAAAAACAATTGAAGATGCTATCAAGACCAACCCTGCCG GTGGCACTGAAAGCATTCTTGTTTATCCAGTGAGTAGCAAAATCTTGACCAAGGTAATTGAAATCTGCAAGAAGTACACT GAAGCTTCTGATTCCAATAACAAGGAAGGCATGTCTGGTGTTGATATCAAAGACTGGGATGCTGAATTTATTGATGTTGA CAATAACACTCTATTGCATCTTCATATTTGTGCAAAATTCTTGAACATCAAGAGTCTGCTACACCTGACAAACAATGCAA TAGCAGACAAGGTGAAAGGGAAGGCTCCAATGGTAATTCGCCAGATGTTTAACATTAAGGATAACGTCTAG
Download CDS Sequence

Protein sequence (LotjaGi4g1v0344200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MCTGQLGDQNCKLLYGRYKEVFETYINSTVLTSLQGKKDGLLLIELLRKWSNYKLMTKWLSLSFCYLNRYYIPHKKLTST EETSFLMFYDLLHKKINVQVADAVTAMIDQGRSGEQIDRTLVNNTLAMYSEIGVILRINNANDFLESLIGERVHRLPHPR ILCKKEIFPGILTPSSKKIRLVSSDGDVFEVDYGVGVGLMSKTIEDAIKTNPAGGTESILVYPVSSKILTKVIEICKKYT EASDSNNKEGMSGVDIKDWDAEFIDVDNNTLLHLHICAKFLNIKSLLHLTNNAIADKVKGKAPMVIRQMFNIKDNV
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11932
1 150 150 1.3E-42 –
PANTHER
PTHR11932:SF133
1 150 150 1.3E-42 –
Gene3D
G3DSA:1.20.1310.10
1 90 90 8.3E-19 –
Pfam
PF00888
9 133 125 1.1E-16
IPR001373
SUPERFAMILY
SSF74788
10 134 125 7.59E-25
IPR016159
Gene3D
G3DSA:3.30.710.10
175 316 142 4.2E-35 –
SMART
SM00512
176 283 108 2.1E-18
IPR001232
Pfam
PF03931
177 240 64 1.8E-9
IPR016073
CDD
cd18322
178 296 119 1.0153E-26 –
SUPERFAMILY
SSF54695
178 240 63 2.35E-7
IPR011333
SUPERFAMILY
SSF81382
253 315 63 1.31E-16
IPR036296
Pfam
PF01466
284 314 31 5.1E-6
IPR016072

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0006511
Biological process Ubiquitin-dependent protein catabolic process The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein.
Subterm of
GO:0031625
Molecular function Ubiquitin protein ligase binding Interacting selectively and non-covalently with a ubiquitin protein ligase enzyme, any of the E3 proteins.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0344200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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