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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0344300 |
| Transcript ID | LotjaGi4g1v0344300.2 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cullin-1; TAIR: AT4G02570.1 cullin 1; Swiss-Prot: sp|Q94AH6|CUL1_ARATH Cullin-1; TrEMBL-Plants: tr|I1MRG8|I1MRG8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0344300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:72420018..72426572) extracted from Lotus japonicus Gifu genome v1.2.
GTGGCCTTCTCCTCTTCCTCTCTTTCTTTCTCTTGTTCATCTTCAGGATCACAACCTTCTCTTCTTCCCTTCTTCTTCTT CCTTCACAAACCACCATTTCTAGGGTTCCGATTTCCACCAAGGTTTTCCCCTTCTTCCCTCAACCCTAATCCTCCTCCTC CTTCTCCTTCTCTTCACATTCATTCCTCTTTCTCAAACCTATTTTCTTTGCGTCGATTCCGTTTCCCCTTTCTGACACAT CGTGTTTGGGTTTTCTCTCGCAGTTGATCGCAGATTCCAGCGTTTTCCGTTCGCCGCCATGTCAATGAGTGAGCGGAAGA CTATTGACCTAGAACAAGGATTGGACTTCATGCTCAAGGGCATCACCAAGCTCAAGAACATTCTTGAAGGCTTGCCTGAA CCCCAGTTCAGCTCTGAGGACTACATGATGCTCTACACGTAAACCCTAACCTTTGAGATTTTCAATTTCTAATCGATTTT GTTTCTCACTGTTGCTATACACTGTTGTTGTTGTTGTTTGAATCATGTTGCAGAACCATCTACAACATGTGCACTCAGAA GCCTCCTCATGATTACTCCCAGCAACTGTATGACAAGTACAGGGAGGCATTTGAAGAGTATATCGTAACCACGGTGAGCA ACACAGCACTATCATTTTACATTGGGGGTGTTATGCTGTTAACTGCTTTGAATGATCTAGGATTTTTTTCATGGCATGTT ATTTTGTCATCTTATAAATGTTGTTGACTCTAGGGTTTATTGATATTGGACTTGTATAGGTTGCATAAGCACAGCTTCAT CGGTTTACTATTTGTCCAACACTTCAGGGATAAATGGATTCGGTCTTTGATACATATTTTATTCTTTTCAAAGAAGTGTT GTGTTGTTTGTTCTTAAAGACGTAAAATAAGTATAGAAGTGTGGTTTGATCAGTGAACTTAATTCTTGTAACCCTAGCCC TTGAAATTTGAATCATGTTTTGAAACGTTTACCCCAAAGGCAACCAGATAACCATAGTTTTGAATAAGGATGGATACAGA TTGACTGAACAATGAGAATACCTGGATGACAAATACTTTGTACTGGAAGGCATGTTAGTTGTATTGAATATTTTCAATAT TTTAAGGATATCTACTAGAATTATATGAATATTTGCTCAGAACTATACCCAAATGTTTTTTAGCTGTACCATTACCATAT ACCCAAATGGCTAACCAATTAGGACTACTGGTCATATAATTTATAAAGTGGTCCTAGTGTTGCTTTTGCCTGTTATTGTA TTATCAGTTTGAGTTCTCTCTATCTCTATCTGTATTTCAATATTTATATTGTCCGTTGGTTTTCTATTAATTTGTTCGCT ATACCTGTTACTGGTTCTGTTTCCAACTATTTGTTCAACAAAATGCCATATTTTATTTTCCTTTTTCTTTTTTCTGTTTG GGTTTCAGGTATTACCTTCTCTGAGAGAAAAGCATGATGAGTTCATGTTGAGAGAACTTGTAAAGAGATGGACAAACCAT AAGGTTATGGTTAGGTGGCTCTCCCGCTTCTTTCACTATTTGGATCGCTACTTCATTGCTCGGAGGTCACTTCCAGCCCT TAATGAAGTTGGGTTGACTTGCTTCCGTGATTTGGTAATATTACATTTGATGAAGTTTGGCGATTTTCTCTTATTATATT GCATTTAATGTAACTTCATTTCAAAATTAATTTATGGGTTTTATTATTGACAGGTTTACAAGGAACTAAATGGGAAAGCG AGAGATGCAGTTATTTCACTTGTATGTTTCCTTCCCATGTATGCTAGATTTCCTATGTTTACAAATGTAGATCAATTAAC TAATCCTTTTTTGTCCATAGATTGATCAAGAACGTGAGGGAGAGCAGATAGATCGAGCTCTATTGAAAAATGTATTAGAT ATCTTTGTTGAAATCGGAATGGGGCAAATGGATCAATATGAGAATGATTTTGAAGCTCCCCTGCTGAACGACAGTTCTGC TTACTATTCTCGGAAAGCTTCAAATTGGATCCTAGAAGATTCTTGTCCTGATTATATGCTCAAGGTGTGGTTTCTCATTT GTTTAACTTCTACTTGGTTTCTTCATGTGCATTACTATCTGAACTCTATTTGGTTTTTTGTTTTCTATTACAGGCTGAGG AGTGCTTAAAACGGGAGAAAGATAGGGTTGGTCATTATTTGCACTCTACTAGTGAGCCAAAGTTATTAGAGGTGTGTTAT TGACCACATGATACTATTTCAGCTATTGGTCACCTGCCGTGCGAGTGAAGTGTTGCTAGGCAACTTACAGAAAAACTGTT GATGATTATAATGGCTTTCTTTTGGCCTCATTTTATAGTTTCTTAACATTTCCCTTGTTTTTGTTCTTCTGGAATATTTC TCATTTAGAAAGTTCAACATGAGCTGTTATCCGTGTATGCAAGCCAACTCCTTGAGAAAGAGCACTCTGGATGTCATGCT TTACTTAGAGATGATAAGGTATTTATGATTTGCTATACCTACAAAATGTTTAACCATGAATTTAGTGTTCTCATATTTTC TTTTAAATGTTTAGGTTGAAGACTTGTCAAGGATGTTCAGGCTCTTTTCTAAAATACCTCGTGGCTTAGATCCTGTTTCT AGTATGTTTAAGCAGGTTGGTGGCATCAAACCTATGTTGATGCTTTTATTTTTCCTCCCTTTTCTATATGCCGATGTCTG ATAAAAGTGAACCTTTGTCTTTTTTTTCTTTTTTGCTTTCGTACTTATCTCTCTCTCTTCTTTTCACAGCATGTTACCAC TGAAGGTATGGCATTGGTGAAGCTGGCTGAAGATGCAGCTAGTAACAAAAAGGTCTATTCCTGAATAAGTTACTCTACAG TTTTGCTTATTTCTGGTTGAGAGTATTATTTTCTAATTGCAACAGTTGAAGAAAGACTATTATGCTTAGTTATTGCATGA TATCCATTTTGTAGTGTCTGTTCAATGTTGCTTGTCCATGAGGAGATGAAGTAATATTTTTAACTTGAACTGTACATTAT ATTTTCAATTCACGTGTCTTGTCATGGCTCTTTCGATTTCATGGGATGTAGGACATGATCTCGAAGTACCTTTACTGAAA AATTGATTGATTAATTGCCGCATTTTACATGTCATTTGATTACTTCTGAAGTTGTGAATGATGTCACTTTTGGAGTGTTT TGTGTTTCCTACTTACCTTTCTATTTTGTGCTTGTAAATGGAAATGTTTGCAGGCAGATAAGAAGGATACCATTGGTCTA CAGGAGCAGGTTATTTTATAAATTATAAATTTATTGATTTTACTACAATATTTTCATTTGTGGATACTGAAATTGTTCTC TTTCTTCAGATTTTTGTTCGGAAGGTGATTGAGCTGCAAGACAAGTACATGGCATATGTGAACGACTGTTTCCAGAATCA TACTCTTTTCCACAAGGTTTTGATTTGAGAGTGCCTTTACAACTATGTCGGATTGATATGTGCATGTAAATCTAAAAGTT TTGATCATATAGGCTCTTAAGGAGGCTTTTGAGATCTTTTGCAACAAAGATGTTTCTGGGAACTCAAGTGCAGAACTTCT TGCCACCTTTTGTGATAACATTCTTAAGAAAGGAGGAAGTGAAAAATTGAGTGATGAAGCTGTTGAAGAAACCCTTGAAA AGGTCTGTATCATTCTTGATTCCCCAAATACTTCTATGACCTTGATGCATGTAGTTTTGACTTTTGAATTTGGGGTTTGT TTTGGTCACTCTGCAGGTGGTCAAGCTGCTCGCCTATATCGGTGACAAAGACTTGTTTGCTGAGTTCTATAGGTAAATTA AAAGAAAAAGTGAAAATTTGTGTGATCATTACTAGGTTTTGATAGCCCAAAAGAAGGGCTTGATATTGCTTTACTGGTGC TTCAATCTTCATTTTTCTGTTATTATTTCCAGTGTTGTCTAAGTATTTTGGTTCTGTTTCATTAACATTGCTGCTGCTTT TTCCTGGGTGTTTTTAAGAATTAAGTTTATTGGTGCATGAAGTTTTTCCTATTTTTGGAGATATTATTAATACCAATCTT AAGATACATTCACATTACCACTTAAGTTTTCTAGACAGTTGGTCATTTACATTGGTAACATTTGGCAGACAGGTTAAAAC GAATAAAACAGAGCATACACATTCATTCTATTTTATGATGGTTCATATGAAAAGTACAATAGAACATAAGGTAAAAAATG GTCCATCTTGGTTTCAATAAAAATTGTCTTAAGTTGTGTACGTACACTACCATATTATTAGAACCTATATGATCCAGAGG TTAGGAGTCAATCCTTGCCACCCTTATTCCTATGATTGAATCTTGGTCTTTCCATGTTTTGATCCAAAATTCACTTGGTT AGGAAGAGGTTGTATCAAGAGTTATGAAACCTATTTTGTTCCTTCATTTAACTGCTTAAGCAATTAAGAGAGCTAGTGCT CGAGACGTTTATTCATGTTTAAGTGGGATAATCAATGCACTTGCTTTAGCGGGATATTTGTTTTGGGAAAAACTTAAAAG CTGTGATGAATGGTTAGCAAAAATGAAATAGATAACAGTGGAGGACATATGGAAAGGAAGAGGAAAAGGAAATTTATTTT AATTTATCATATTTACTTTTATGCCTCTAGACTTATTATCAGTTTATTTGATGTATATTTTAATGAGAAAGTATTATTTT GGAATTTAAGTGACCAAAGTGATAATGGGCAATGTTTTAACAATATTTTAACATGATGTTTATAGAAGAACAATTCACCA TTGGAGCATCTTGTGATCCTCTGAAAAGATTTGGAGTGCCTTTATTAAATTTTATGCTTACACAATTACTTCCAAATGCT ATTTTGGACATATATTTACCTTGACAATGTTTACTTCATTTTCTCAAGGCTAATTAAGATCAGTTTTCTGTGGATATATC TAAATGTCAGTATTACCCTTTTTGTATAGGATTATTTGGATAACGAATAGTAATACAGGATTCTTGTTTGGTTGCTTTCA GGAAGAAGCTTGCTCGGAGACTTCTTTTTGATAAGAGTGCCAATGATGACCATGAGAGGAGTATTTTGTCAAAATTGAAG CAACAATGTGGTCAACAGTTTACTGTAAAGATGGAAGGAATGGTCAGTCTTAAGTTTTTCAAATTGGTGGCTGATATGCT AAATTCAACTTTTTTTGGTTGGTTGATAAGAGAAAAACTAAATGCTGTTTCGCTCCCTCCAGGTTAATGATTTGACAATG GCAAAGGAGAATCAAACAAACTTTGATGAGTATTTAAGCGATAATCCTAATGACACTGGGATAGACTTGACAGTCACAGT TCTGACTACTGGCTTCTGGCCTAGTTACAAATCTTTTGATCTCAATCTTCCAGCAGAAATGGTATTCGGGATCATCTTGA TATAACAATTTCGAATTTGGTGTTCTGCTTTTGACACAACTTAACCTTGATTCTGTAGTTTTTTGTCTATAATTAATACC TTCCTCTTTATTTCTTTTATTTTCTGTTCAGGTTAAGTGTGTTGAAATTTTTAAAGAATTTTATCAGACTAAAACAAAGC AGAGAAAACTTACATGGATTTACTCCTTGGGTACCTGTAACGTAGTTGGCAAATTTGATCCGAAAACAGTGGAGCTGGTT GTTACAACCTATCAGGTTATAGTACTTACTACCTTCTTATCTATAATTATATATATGCTATGCCCTCACTTCACTTAGTT GGAAAAGGCTTAGTTGTTACTGTTGCTGTTATGCCCTCACCTGTTTCATTTTTTCAAACATGGGATATCCATAGATTCTT GTGTGAATTTCTTTCTACTGACCCCGTGTTATTTTATTTTTCGATAGGCTTCAGCGTTGCTGCTTTTTAATTCCTCAGAT AGGCTGAGTTATTCAGAGATAATGACTCAGTTAAACTTGACGGATGATGATGTTATTAGATTGCTCCACTCCTTGTCCTG TGCCAAGTACAAGATTCTTAACAAGGAACCAAACACAAAAACAATATCAAATACAGATTATTTTGAATTTAATTCAAAAT TTACTGACAAAATGAGGAGGATCAAGGTATAATTTAATTTAAAAATAGTGGTTCAATCTCATCTCAATCTCTGCTATTCA CCGGTTTTTGAGTGGAATTATGGCACGTTTTGATGCAGATTCCTCTTCCTCCTGTGGATGAAAAGAAGAAAGTAATTGAG AATGTTGACAAGGACAGACGATATGCCATTGATGCCTCACTTGTGCGTATTATGAAGAGCCGAAAAGTTTTGGGGTACCA ACAGTTAGTTATGGAATGTGTTGAGCAGTTGGGTCGCATGTTTAAGGTTCACACTTGTTCACTTTCCTAACATCATCTTG TGTCTTTTTTGGTCAAATACTAATTTTTTTTTATATCTTATATACTTGTCCAGCCTGATGTCAAGGCAATTAAGAAGCGG ATTGAAGATTTGATTTCTCGAGACTACCTGGAAAGAGAGAAAGACAATCCAAACATGTTCAGGTACTTGGCTTGA
CDS sequence (LotjaGi4g1v0344300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAATGAGTGAGCGGAAGACTATTGACCTAGAACAAGGATTGGACTTCATGCTCAAGGGCATCACCAAGCTCAAGAA CATTCTTGAAGGCTTGCCTGAACCCCAGTTCAGCTCTGAGGACTACATGATGCTCTACACAACCATCTACAACATGTGCA CTCAGAAGCCTCCTCATGATTACTCCCAGCAACTGTATGACAAGTACAGGGAGGCATTTGAAGAGTATATCGTAACCACG GTATTACCTTCTCTGAGAGAAAAGCATGATGAGTTCATGTTGAGAGAACTTGTAAAGAGATGGACAAACCATAAGGTTAT GGTTAGGTGGCTCTCCCGCTTCTTTCACTATTTGGATCGCTACTTCATTGCTCGGAGGTCACTTCCAGCCCTTAATGAAG TTGGGTTGACTTGCTTCCGTGATTTGGTTTACAAGGAACTAAATGGGAAAGCGAGAGATGCAGTTATTTCACTTATTGAT CAAGAACGTGAGGGAGAGCAGATAGATCGAGCTCTATTGAAAAATGTATTAGATATCTTTGTTGAAATCGGAATGGGGCA AATGGATCAATATGAGAATGATTTTGAAGCTCCCCTGCTGAACGACAGTTCTGCTTACTATTCTCGGAAAGCTTCAAATT GGATCCTAGAAGATTCTTGTCCTGATTATATGCTCAAGGCTGAGGAGTGCTTAAAACGGGAGAAAGATAGGGTTGGTCAT TATTTGCACTCTACTAGTGAGCCAAAGTTATTAGAGAAAGTTCAACATGAGCTGTTATCCGTGTATGCAAGCCAACTCCT TGAGAAAGAGCACTCTGGATGTCATGCTTTACTTAGAGATGATAAGGTTGAAGACTTGTCAAGGATGTTCAGGCTCTTTT CTAAAATACCTCGTGGCTTAGATCCTGTTTCTAGTATGTTTAAGCAGCATGTTACCACTGAAGGTATGGCATTGGTGAAG CTGGCTGAAGATGCAGCTAGTAACAAAAAGGCAGATAAGAAGGATACCATTGGTCTACAGGAGCAGATTTTTGTTCGGAA GGTGATTGAGCTGCAAGACAAGTACATGGCATATGTGAACGACTGTTTCCAGAATCATACTCTTTTCCACAAGGCTCTTA AGGAGGCTTTTGAGATCTTTTGCAACAAAGATGTTTCTGGGAACTCAAGTGCAGAACTTCTTGCCACCTTTTGTGATAAC ATTCTTAAGAAAGGAGGAAGTGAAAAATTGAGTGATGAAGCTGTTGAAGAAACCCTTGAAAAGGTGGTCAAGCTGCTCGC CTATATCGGTGACAAAGACTTGTTTGCTGAGTTCTATAGGAAGAAGCTTGCTCGGAGACTTCTTTTTGATAAGAGTGCCA ATGATGACCATGAGAGGAGTATTTTGTCAAAATTGAAGCAACAATGTGGTCAACAGTTTACTGTAAAGATGGAAGGAATG GTTAATGATTTGACAATGGCAAAGGAGAATCAAACAAACTTTGATGAGTATTTAAGCGATAATCCTAATGACACTGGGAT AGACTTGACAGTCACAGTTCTGACTACTGGCTTCTGGCCTAGTTACAAATCTTTTGATCTCAATCTTCCAGCAGAAATGG TTAAGTGTGTTGAAATTTTTAAAGAATTTTATCAGACTAAAACAAAGCAGAGAAAACTTACATGGATTTACTCCTTGGGT ACCTGTAACGTAGTTGGCAAATTTGATCCGAAAACAGTGGAGCTGGTTGTTACAACCTATCAGGCTTCAGCGTTGCTGCT TTTTAATTCCTCAGATAGGCTGAGTTATTCAGAGATAATGACTCAGTTAAACTTGACGGATGATGATGTTATTAGATTGC TCCACTCCTTGTCCTGTGCCAAGTACAAGATTCTTAACAAGGAACCAAACACAAAAACAATATCAAATACAGATTATTTT GAATTTAATTCAAAATTTACTGACAAAATGAGGAGGATCAAGATTCCTCTTCCTCCTGTGGATGAAAAGAAGAAAGTAAT TGAGAATGTTGACAAGGACAGACGATATGCCATTGATGCCTCACTTGTGCGTATTATGAAGAGCCGAAAAGTTTTGGGGT ACCAACAGTTAGTTATGGAATGTGTTGAGCAGTTGGGTCGCATGTTTAAGCCTGATGTCAAGGCAATTAAGAAGCGGATT GAAGATTTGATTTCTCGAGACTACCTGGAAAGAGAGAAAGACAATCCAAACATGTTCAGGTACTTGGCTTGA
Protein sequence (LotjaGi4g1v0344300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSMSERKTIDLEQGLDFMLKGITKLKNILEGLPEPQFSSEDYMMLYTTIYNMCTQKPPHDYSQQLYDKYREAFEEYIVTT VLPSLREKHDEFMLRELVKRWTNHKVMVRWLSRFFHYLDRYFIARRSLPALNEVGLTCFRDLVYKELNGKARDAVISLID QEREGEQIDRALLKNVLDIFVEIGMGQMDQYENDFEAPLLNDSSAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVGH YLHSTSEPKLLEKVQHELLSVYASQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSSMFKQHVTTEGMALVK LAEDAASNKKADKKDTIGLQEQIFVRKVIELQDKYMAYVNDCFQNHTLFHKALKEAFEIFCNKDVSGNSSAELLATFCDN ILKKGGSEKLSDEAVEETLEKVVKLLAYIGDKDLFAEFYRKKLARRLLFDKSANDDHERSILSKLKQQCGQQFTVKMEGM VNDLTMAKENQTNFDEYLSDNPNDTGIDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEIFKEFYQTKTKQRKLTWIYSLG TCNVVGKFDPKTVELVVTTYQASALLLFNSSDRLSYSEIMTQLNLTDDDVIRLLHSLSCAKYKILNKEPNTKTISNTDYF EFNSKFTDKMRRIKIPLPPVDEKKKVIENVDKDRRYAIDASLVRIMKSRKVLGYQQLVMECVEQLGRMFKPDVKAIKKRI EDLISRDYLEREKDNPNMFRYLA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 743 | 741 | 0.0 | – | |
| PANTHER | 3 | 743 | 741 | 0.0 | – | |
| Gene3D | 4 | 141 | 138 | 1.6E-37 | – | |
| SUPERFAMILY | 12 | 384 | 373 | 3.66E-104 | ||
| Pfam | 25 | 646 | 622 | 1.6E-181 | ||
| Gene3D | 142 | 263 | 122 | 3.4E-38 | – | |
| Gene3D | 267 | 389 | 123 | 1.7E-41 | – | |
| SUPERFAMILY | 387 | 656 | 270 | 2.49E-91 | ||
| ProSiteProfiles | 389 | 618 | 230 | 50.064 | ||
| Gene3D | 390 | 501 | 112 | 1.5E-36 | – | |
| SMART | 420 | 568 | 149 | 1.9E-72 | ||
| Gene3D | 505 | 659 | 155 | 4.1E-52 | – | |
| SUPERFAMILY | 657 | 743 | 87 | 2.84E-26 | ||
| Gene3D | 660 | 743 | 84 | 4.0E-29 | ||
| SMART | 670 | 737 | 68 | 5.4E-33 | ||
| Pfam | 673 | 735 | 63 | 3.6E-24 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Ubiquitin-dependent protein catabolic process | The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein. | ||
| Molecular function | Ubiquitin protein ligase binding | Interacting selectively and non-covalently with a ubiquitin protein ligase enzyme, any of the E3 proteins. |
Expression pattern of LotjaGi4g1v0344300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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