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LotjaGi4g1v0344300.3

Overview

Field Value
Gene ID LotjaGi4g1v0344300
Transcript ID LotjaGi4g1v0344300.3
Related isoforms 4
Lotus japonicus genome version Gifu v1.2
Description Cullin-1; TAIR: AT4G02570.1 cullin 1; Swiss-Prot: sp|Q94AH6|CUL1_ARATH Cullin-1; TrEMBL-Plants: tr|I1MRG8|I1MRG8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0344300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:72420025..72426572) extracted from Lotus japonicus Gifu genome v1.2.

TCTCCTCTTCCTCTCTTTCTTTCTCTTGTTCATCTTCAGGATCACAACCTTCTCTTCTTCCCTTCTTCTTCTTCCTTCAC AAACCACCATTTCTAGGGTTCCGATTTCCACCAAGGTTTTCCCCTTCTTCCCTCAACCCTAATCCTCCTCCTCCTTCTCC TTCTCTTCACATTCATTCCTCTTTCTCAAACCTATTTTCTTTGCGTCGATTCCGTTTCCCCTTTCTGACACATCGTGTTT GGGTTTTCTCTCGCAGTTGATCGCAGATTCCAGCGTTTTCCGTTCGCCGCCATGTCAATGAGTGAGCGGAAGACTATTGA CCTAGAACAAGGATTGGACTTCATGCTCAAGGGCATCACCAAGCTCAAGAACATTCTTGAAGGCTTGCCTGAACCCCAGT TCAGCTCTGAGGACTACATGATGCTCTACACGTAAACCCTAACCTTTGAGATTTTCAATTTCTAATCGATTTTGTTTCTC ACTGTTGCTATACACTGTTGTTGTTGTTGTTTGAATCATGTTGCAGAACCATCTACAACATGTGCACTCAGAAGCCTCCT CATGATTACTCCCAGCAACTGTATGACAAGTACAGGGAGGCATTTGAAGAGTATATCGTAACCACGGTGAGCAACACAGC ACTATCATTTTACATTGGGGGTGTTATGCTGTTAACTGCTTTGAATGATCTAGGATTTTTTTCATGGCATGTTATTTTGT CATCTTATAAATGTTGTTGACTCTAGGGTTTATTGATATTGGACTTGTATAGGTTGCATAAGCACAGCTTCATCGGTTTA CTATTTGTCCAACACTTCAGGGATAAATGGATTCGGTCTTTGATACATATTTTATTCTTTTCAAAGAAGTGTTGTGTTGT TTGTTCTTAAAGACGTAAAATAAGTATAGAAGTGTGGTTTGATCAGTGAACTTAATTCTTGTAACCCTAGCCCTTGAAAT TTGAATCATGTTTTGAAACGTTTACCCCAAAGGCAACCAGATAACCATAGTTTTGAATAAGGATGGATACAGATTGACTG AACAATGAGAATACCTGGATGACAAATACTTTGTACTGGAAGGCATGTTAGTTGTATTGAATATTTTCAATATTTTAAGG ATATCTACTAGAATTATATGAATATTTGCTCAGAACTATACCCAAATGTTTTTTAGCTGTACCATTACCATATACCCAAA TGGCTAACCAATTAGGACTACTGGTCATATAATTTATAAAGTGGTCCTAGTGTTGCTTTTGCCTGTTATTGTATTATCAG TTTGAGTTCTCTCTATCTCTATCTGTATTTCAATATTTATATTGTCCGTTGGTTTTCTATTAATTTGTTCGCTATACCTG TTACTGGTTCTGTTTCCAACTATTTGTTCAACAAAATGCCATATTTTATTTTCCTTTTTCTTTTTTCTGTTTGGGTTTCA GGTATTACCTTCTCTGAGAGAAAAGCATGATGAGTTCATGTTGAGAGAACTTGTAAAGAGATGGACAAACCATAAGGTTA TGGTTAGGTGGCTCTCCCGCTTCTTTCACTATTTGGATCGCTACTTCATTGCTCGGAGGTCACTTCCAGCCCTTAATGAA GTTGGGTTGACTTGCTTCCGTGATTTGGTAATATTACATTTGATGAAGTTTGGCGATTTTCTCTTATTATATTGCATTTA ATGTAACTTCATTTCAAAATTAATTTATGGGTTTTATTATTGACAGGTTTACAAGGAACTAAATGGGAAAGCGAGAGATG CAGTTATTTCACTTGTATGTTTCCTTCCCATGTATGCTAGATTTCCTATGTTTACAAATGTAGATCAATTAACTAATCCT TTTTTGTCCATAGATTGATCAAGAACGTGAGGGAGAGCAGATAGATCGAGCTCTATTGAAAAATGTATTAGATATCTTTG TTGAAATCGGAATGGGGCAAATGGATCAATATGAGAATGATTTTGAAGCTCCCCTGCTGAACGACAGTTCTGCTTACTAT TCTCGGAAAGCTTCAAATTGGATCCTAGAAGATTCTTGTCCTGATTATATGCTCAAGGTGTGGTTTCTCATTTGTTTAAC TTCTACTTGGTTTCTTCATGTGCATTACTATCTGAACTCTATTTGGTTTTTTGTTTTCTATTACAGGCTGAGGAGTGCTT AAAACGGGAGAAAGATAGGGTTGGTCATTATTTGCACTCTACTAGTGAGCCAAAGTTATTAGAGGTGTGTTATTGACCAC ATGATACTATTTCAGCTATTGGTCACCTGCCGTGCGAGTGAAGTGTTGCTAGGCAACTTACAGAAAAACTGTTGATGATT ATAATGGCTTTCTTTTGGCCTCATTTTATAGTTTCTTAACATTTCCCTTGTTTTTGTTCTTCTGGAATATTTCTCATTTA GAAAGTTCAACATGAGCTGTTATCCGTGTATGCAAGCCAACTCCTTGAGAAAGAGCACTCTGGATGTCATGCTTTACTTA GAGATGATAAGGTATTTATGATTTGCTATACCTACAAAATGTTTAACCATGAATTTAGTGTTCTCATATTTTCTTTTAAA TGTTTAGGTTGAAGACTTGTCAAGGATGTTCAGGCTCTTTTCTAAAATACCTCGTGGCTTAGATCCTGTTTCTAGTATGT TTAAGCAGGTTGGTGGCATCAAACCTATGTTGATGCTTTTATTTTTCCTCCCTTTTCTATATGCCGATGTCTGATAAAAG TGAACCTTTGTCTTTTTTTTCTTTTTTGCTTTCGTACTTATCTCTCTCTCTTCTTTTCACAGCATGTTACCACTGAAGGT ATGGCATTGGTGAAGCTGGCTGAAGATGCAGCTAGTAACAAAAAGGTCTATTCCTGAATAAGTTACTCTACAGTTTTGCT TATTTCTGGTTGAGAGTATTATTTTCTAATTGCAACAGTTGAAGAAAGACTATTATGCTTAGTTATTGCATGATATCCAT TTTGTAGTGTCTGTTCAATGTTGCTTGTCCATGAGGAGATGAAGTAATATTTTTAACTTGAACTGTACATTATATTTTCA ATTCACGTGTCTTGTCATGGCTCTTTCGATTTCATGGGATGTAGGACATGATCTCGAAGTACCTTTACTGAAAAATTGAT TGATTAATTGCCGCATTTTACATGTCATTTGATTACTTCTGAAGTTGTGAATGATGTCACTTTTGGAGTGTTTTGTGTTT CCTACTTACCTTTCTATTTTGTGCTTGTAAATGGAAATGTTTGCAGGCAGATAAGAAGGATACCATTGGTCTACAGGAGC AGGTTATTTTATAAATTATAAATTTATTGATTTTACTACAATATTTTCATTTGTGGATACTGAAATTGTTCTCTTTCTTC AGATTTTTGTTCGGAAGGTGATTGAGCTGCAAGACAAGTACATGGCATATGTGAACGACTGTTTCCAGAATCATACTCTT TTCCACAAGGTTTTGATTTGAGAGTGCCTTTACAACTATGTCGGATTGATATGTGCATGTAAATCTAAAAGTTTTGATCA TATAGGCTCTTAAGGAGGCTTTTGAGATCTTTTGCAACAAAGATGTTTCTGGGAACTCAAGTGCAGAACTTCTTGCCACC TTTTGTGATAACATTCTTAAGAAAGGAGGAAGTGAAAAATTGAGTGATGAAGCTGTTGAAGAAACCCTTGAAAAGGTCTG TATCATTCTTGATTCCCCAAATACTTCTATGACCTTGATGCATGTAGTTTTGACTTTTGAATTTGGGGTTTGTTTTGGTC ACTCTGCAGGTGGTCAAGCTGCTCGCCTATATCGGTGACAAAGACTTGTTTGCTGAGTTCTATAGGTAAATTAAAAGAAA AAGTGAAAATTTGTGTGATCATTACTAGGTTTTGATAGCCCAAAAGAAGGGCTTGATATTGCTTTACTGGTGCTTCAATC TTCATTTTTCTGTTATTATTTCCAGTGTTGTCTAAGTATTTTGGTTCTGTTTCATTAACATTGCTGCTGCTTTTTCCTGG GTGTTTTTAAGAATTAAGTTTATTGGTGCATGAAGTTTTTCCTATTTTTGGAGATATTATTAATACCAATCTTAAGATAC ATTCACATTACCACTTAAGTTTTCTAGACAGTTGGTCATTTACATTGGTAACATTTGGCAGACAGGTTAAAACGAATAAA ACAGAGCATACACATTCATTCTATTTTATGATGGTTCATATGAAAAGTACAATAGAACATAAGGTAAAAAATGGTCCATC TTGGTTTCAATAAAAATTGTCTTAAGTTGTGTACGTACACTACCATATTATTAGAACCTATATGATCCAGAGGTTAGGAG TCAATCCTTGCCACCCTTATTCCTATGATTGAATCTTGGTCTTTCCATGTTTTGATCCAAAATTCACTTGGTTAGGAAGA GGTTGTATCAAGAGTTATGAAACCTATTTTGTTCCTTCATTTAACTGCTTAAGCAATTAAGAGAGCTAGTGCTCGAGACG TTTATTCATGTTTAAGTGGGATAATCAATGCACTTGCTTTAGCGGGATATTTGTTTTGGGAAAAACTTAAAAGCTGTGAT GAATGGTTAGCAAAAATGAAATAGATAACAGTGGAGGACATATGGAAAGGAAGAGGAAAAGGAAATTTATTTTAATTTAT CATATTTACTTTTATGCCTCTAGACTTATTATCAGTTTATTTGATGTATATTTTAATGAGAAAGTATTATTTTGGAATTT AAGTGACCAAAGTGATAATGGGCAATGTTTTAACAATATTTTAACATGATGTTTATAGAAGAACAATTCACCATTGGAGC ATCTTGTGATCCTCTGAAAAGATTTGGAGTGCCTTTATTAAATTTTATGCTTACACAATTACTTCCAAATGCTATTTTGG ACATATATTTACCTTGACAATGTTTACTTCATTTTCTCAAGGCTAATTAAGATCAGTTTTCTGTGGATATATCTAAATGT CAGTATTACCCTTTTTGTATAGGATTATTTGGATAACGAATAGTAATACAGGATTCTTGTTTGGTTGCTTTCAGGAAGAA GCTTGCTCGGAGACTTCTTTTTGATAAGAGTGCCAATGATGACCATGAGAGGAGTATTTTGTCAAAATTGAAGCAACAAT GTGGTCAACAGTTTACTGTAAAGATGGAAGGAATGGTCAGTCTTAAGTTTTTCAAATTGGTGGCTGATATGCTAAATTCA ACTTTTTTTGGTTGGTTGATAAGAGAAAAACTAAATGCTGTTTCGCTCCCTCCAGGTTAATGATTTGACAATGGCAAAGG AGAATCAAACAAACTTTGATGAGTATTTAAGCGATAATCCTAATGACACTGGGATAGACTTGACAGTCACAGTTCTGACT ACTGGCTTCTGGCCTAGTTACAAATCTTTTGATCTCAATCTTCCAGCAGAAATGGTATTCGGGATCATCTTGATATAACA ATTTCGAATTTGGTGTTCTGCTTTTGACACAACTTAACCTTGATTCTGTAGTTTTTTGTCTATAATTAATACCTTCCTCT TTATTTCTTTTATTTTCTGTTCAGGTTAAGTGTGTTGAAATTTTTAAAGAATTTTATCAGACTAAAACAAAGCAGAGAAA ACTTACATGGATTTACTCCTTGGGTACCTGTAACGTAGTTGGCAAATTTGATCCGAAAACAGTGGAGCTGGTTGTTACAA CCTATCAGGTTATAGTACTTACTACCTTCTTATCTATAATTATATATATGCTATGCCCTCACTTCACTTAGTTGGAAAAG GCTTAGTTGTTACTGTTGCTGTTATGCCCTCACCTGTTTCATTTTTTCAAACATGGGATATCCATAGATTCTTGTGTGAA TTTCTTTCTACTGACCCCGTGTTATTTTATTTTTCGATAGGCTTCAGCGTTGCTGCTTTTTAATTCCTCAGATAGGCTGA GTTATTCAGAGATAATGACTCAGTTAAACTTGACGGATGATGATGTTATTAGATTGCTCCACTCCTTGTCCTGTGCCAAG TACAAGATTCTTAACAAGGAACCAAACACAAAAACAATATCAAATACAGATTATTTTGAATTTAATTCAAAATTTACTGA CAAAATGAGGAGGATCAAGGTATAATTTAATTTAAAAATAGTGGTTCAATCTCATCTCAATCTCTGCTATTCACCGGTTT TTGAGTGGAATTATGGCACGTTTTGATGCAGATTCCTCTTCCTCCTGTGGATGAAAAGAAGAAAGTAATTGAGAATGTTG ACAAGGACAGACGATATGCCATTGATGCCTCACTTGTGCGTATTATGAAGAGCCGAAAAGTTTTGGGGTACCAACAGTTA GTTATGGAATGTGTTGAGCAGTTGGGTCGCATGTTTAAGGTTCACACTTGTTCACTTTCCTAACATCATCTTGTGTCTTT TTTGGTCAAATACTAATTTTTTTTTATATCTTATATACTTGTCCAGCCTGATGTCAAGGCAATTAAGAAGCGGATTGAAG ATTTGATTTCTCGAGACTACCTGGAAAGAGAGAAAGACAATCCAAACATGTTCAGGTACTTGGCTTGA 

CDS sequence (LotjaGi4g1v0344300.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTCAATGAGTGAGCGGAAGACTATTGACCTAGAACAAGGATTGGACTTCATGCTCAAGGGCATCACCAAGCTCAAGAA CATTCTTGAAGGCTTGCCTGAACCCCAGTTCAGCTCTGAGGACTACATGATGCTCTACACAACCATCTACAACATGTGCA CTCAGAAGCCTCCTCATGATTACTCCCAGCAACTGTATGACAAGTACAGGGAGGCATTTGAAGAGTATATCGTAACCACG GTATTACCTTCTCTGAGAGAAAAGCATGATGAGTTCATGTTGAGAGAACTTGTAAAGAGATGGACAAACCATAAGGTTAT GGTTAGGTGGCTCTCCCGCTTCTTTCACTATTTGGATCGCTACTTCATTGCTCGGAGGTCACTTCCAGCCCTTAATGAAG TTGGGTTGACTTGCTTCCGTGATTTGGTTTACAAGGAACTAAATGGGAAAGCGAGAGATGCAGTTATTTCACTTATTGAT CAAGAACGTGAGGGAGAGCAGATAGATCGAGCTCTATTGAAAAATGTATTAGATATCTTTGTTGAAATCGGAATGGGGCA AATGGATCAATATGAGAATGATTTTGAAGCTCCCCTGCTGAACGACAGTTCTGCTTACTATTCTCGGAAAGCTTCAAATT GGATCCTAGAAGATTCTTGTCCTGATTATATGCTCAAGGCTGAGGAGTGCTTAAAACGGGAGAAAGATAGGGTTGGTCAT TATTTGCACTCTACTAGTGAGCCAAAGTTATTAGAGAAAGTTCAACATGAGCTGTTATCCGTGTATGCAAGCCAACTCCT TGAGAAAGAGCACTCTGGATGTCATGCTTTACTTAGAGATGATAAGGTTGAAGACTTGTCAAGGATGTTCAGGCTCTTTT CTAAAATACCTCGTGGCTTAGATCCTGTTTCTAGTATGTTTAAGCAGCATGTTACCACTGAAGGTATGGCATTGGTGAAG CTGGCTGAAGATGCAGCTAGTAACAAAAAGGCAGATAAGAAGGATACCATTGGTCTACAGGAGCAGATTTTTGTTCGGAA GGTGATTGAGCTGCAAGACAAGTACATGGCATATGTGAACGACTGTTTCCAGAATCATACTCTTTTCCACAAGGCTCTTA AGGAGGCTTTTGAGATCTTTTGCAACAAAGATGTTTCTGGGAACTCAAGTGCAGAACTTCTTGCCACCTTTTGTGATAAC ATTCTTAAGAAAGGAGGAAGTGAAAAATTGAGTGATGAAGCTGTTGAAGAAACCCTTGAAAAGGTGGTCAAGCTGCTCGC CTATATCGGTGACAAAGACTTGTTTGCTGAGTTCTATAGGAAGAAGCTTGCTCGGAGACTTCTTTTTGATAAGAGTGCCA ATGATGACCATGAGAGGAGTATTTTGTCAAAATTGAAGCAACAATGTGGTCAACAGTTTACTGTAAAGATGGAAGGAATG GTTAATGATTTGACAATGGCAAAGGAGAATCAAACAAACTTTGATGAGTATTTAAGCGATAATCCTAATGACACTGGGAT AGACTTGACAGTCACAGTTCTGACTACTGGCTTCTGGCCTAGTTACAAATCTTTTGATCTCAATCTTCCAGCAGAAATGG TTAAGTGTGTTGAAATTTTTAAAGAATTTTATCAGACTAAAACAAAGCAGAGAAAACTTACATGGATTTACTCCTTGGGT ACCTGTAACGTAGTTGGCAAATTTGATCCGAAAACAGTGGAGCTGGTTGTTACAACCTATCAGGCTTCAGCGTTGCTGCT TTTTAATTCCTCAGATAGGCTGAGTTATTCAGAGATAATGACTCAGTTAAACTTGACGGATGATGATGTTATTAGATTGC TCCACTCCTTGTCCTGTGCCAAGTACAAGATTCTTAACAAGGAACCAAACACAAAAACAATATCAAATACAGATTATTTT GAATTTAATTCAAAATTTACTGACAAAATGAGGAGGATCAAGATTCCTCTTCCTCCTGTGGATGAAAAGAAGAAAGTAAT TGAGAATGTTGACAAGGACAGACGATATGCCATTGATGCCTCACTTGTGCGTATTATGAAGAGCCGAAAAGTTTTGGGGT ACCAACAGTTAGTTATGGAATGTGTTGAGCAGTTGGGTCGCATGTTTAAGCCTGATGTCAAGGCAATTAAGAAGCGGATT GAAGATTTGATTTCTCGAGACTACCTGGAAAGAGAGAAAGACAATCCAAACATGTTCAGGTACTTGGCTTGA 

Protein sequence (LotjaGi4g1v0344300.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSMSERKTIDLEQGLDFMLKGITKLKNILEGLPEPQFSSEDYMMLYTTIYNMCTQKPPHDYSQQLYDKYREAFEEYIVTT VLPSLREKHDEFMLRELVKRWTNHKVMVRWLSRFFHYLDRYFIARRSLPALNEVGLTCFRDLVYKELNGKARDAVISLID QEREGEQIDRALLKNVLDIFVEIGMGQMDQYENDFEAPLLNDSSAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVGH YLHSTSEPKLLEKVQHELLSVYASQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSSMFKQHVTTEGMALVK LAEDAASNKKADKKDTIGLQEQIFVRKVIELQDKYMAYVNDCFQNHTLFHKALKEAFEIFCNKDVSGNSSAELLATFCDN ILKKGGSEKLSDEAVEETLEKVVKLLAYIGDKDLFAEFYRKKLARRLLFDKSANDDHERSILSKLKQQCGQQFTVKMEGM VNDLTMAKENQTNFDEYLSDNPNDTGIDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEIFKEFYQTKTKQRKLTWIYSLG TCNVVGKFDPKTVELVVTTYQASALLLFNSSDRLSYSEIMTQLNLTDDDVIRLLHSLSCAKYKILNKEPNTKTISNTDYF EFNSKFTDKMRRIKIPLPPVDEKKKVIENVDKDRRYAIDASLVRIMKSRKVLGYQQLVMECVEQLGRMFKPDVKAIKKRI EDLISRDYLEREKDNPNMFRYLA 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER 3 743 741 0.0
PANTHER 3 743 741 0.0
Gene3D 4 141 138 1.6E-37
SUPERFAMILY 12 384 373 3.66E-104
Pfam 25 646 622 1.6E-181
Gene3D 142 263 122 3.4E-38
Gene3D 267 389 123 1.7E-41
SUPERFAMILY 387 656 270 2.49E-91
ProSiteProfiles 389 618 230 50.064
Gene3D 390 501 112 1.5E-36
SMART 420 568 149 1.9E-72
Gene3D 505 659 155 4.1E-52
SUPERFAMILY 657 743 87 2.84E-26
Gene3D 660 743 84 4.0E-29
SMART 670 737 68 5.4E-33
Pfam 673 735 63 3.6E-24

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Biological process Ubiquitin-dependent protein catabolic process The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein.
Molecular function Ubiquitin protein ligase binding Interacting selectively and non-covalently with a ubiquitin protein ligase enzyme, any of the E3 proteins.

Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0344300.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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