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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0344300 |
| Transcript ID | LotjaGi4g1v0344300.4 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cullin-1; TAIR: AT4G02570.1 cullin 1; Swiss-Prot: sp|Q94AH6|CUL1_ARATH Cullin-1; TrEMBL-Plants: tr|I1MRG8|I1MRG8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0344300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:72420316..72426572) extracted from Lotus japonicus Gifu genome v1.2.
ATGTCAATGAGTGAGCGGAAGACTATTGACCTAGAACAAGGATTGGACTTCATGCTCAAGGGCATCACCAAGCTCAAGAA CATTCTTGAAGGCTTGCCTGAACCCCAGTTCAGCTCTGAGGACTACATGATGCTCTACACGTAAACCCTAACCTTTGAGA TTTTCAATTTCTAATCGATTTTGTTTCTCACTGTTGCTATACACTGTTGTTGTTGTTGTTTGAATCATGTTGCAGAACCA TCTACAACATGTGCACTCAGAAGCCTCCTCATGATTACTCCCAGCAACTGTATGACAAGTACAGGGAGGCATTTGAAGAG TATATCGTAACCACGGTGAGCAACACAGCACTATCATTTTACATTGGGGGTGTTATGCTGTTAACTGCTTTGAATGATCT AGGATTTTTTTCATGGCATGTTATTTTGTCATCTTATAAATGTTGTTGACTCTAGGGTTTATTGATATTGGACTTGTATA GGTTGCATAAGCACAGCTTCATCGGTTTACTATTTGTCCAACACTTCAGGGATAAATGGATTCGGTCTTTGATACATATT TTATTCTTTTCAAAGAAGTGTTGTGTTGTTTGTTCTTAAAGACGTAAAATAAGTATAGAAGTGTGGTTTGATCAGTGAAC TTAATTCTTGTAACCCTAGCCCTTGAAATTTGAATCATGTTTTGAAACGTTTACCCCAAAGGCAACCAGATAACCATAGT TTTGAATAAGGATGGATACAGATTGACTGAACAATGAGAATACCTGGATGACAAATACTTTGTACTGGAAGGCATGTTAG TTGTATTGAATATTTTCAATATTTTAAGGATATCTACTAGAATTATATGAATATTTGCTCAGAACTATACCCAAATGTTT TTTAGCTGTACCATTACCATATACCCAAATGGCTAACCAATTAGGACTACTGGTCATATAATTTATAAAGTGGTCCTAGT GTTGCTTTTGCCTGTTATTGTATTATCAGTTTGAGTTCTCTCTATCTCTATCTGTATTTCAATATTTATATTGTCCGTTG GTTTTCTATTAATTTGTTCGCTATACCTGTTACTGGTTCTGTTTCCAACTATTTGTTCAACAAAATGCCATATTTTATTT TCCTTTTTCTTTTTTCTGTTTGGGTTTCAGGTATTACCTTCTCTGAGAGAAAAGCATGATGAGTTCATGTTGAGAGAACT TGTAAAGAGATGGACAAACCATAAGGTTATGGTTAGGTGGCTCTCCCGCTTCTTTCACTATTTGGATCGCTACTTCATTG CTCGGAGGTCACTTCCAGCCCTTAATGAAGTTGGGTTGACTTGCTTCCGTGATTTGGTAATATTACATTTGATGAAGTTT GGCGATTTTCTCTTATTATATTGCATTTAATGTAACTTCATTTCAAAATTAATTTATGGGTTTTATTATTGACAGGTTTA CAAGGAACTAAATGGGAAAGCGAGAGATGCAGTTATTTCACTTGTATGTTTCCTTCCCATGTATGCTAGATTTCCTATGT TTACAAATGTAGATCAATTAACTAATCCTTTTTTGTCCATAGATTGATCAAGAACGTGAGGGAGAGCAGATAGATCGAGC TCTATTGAAAAATGTATTAGATATCTTTGTTGAAATCGGAATGGGGCAAATGGATCAATATGAGAATGATTTTGAAGCTC CCCTGCTGAACGACAGTTCTGCTTACTATTCTCGGAAAGCTTCAAATTGGATCCTAGAAGATTCTTGTCCTGATTATATG CTCAAGGTGTGGTTTCTCATTTGTTTAACTTCTACTTGGTTTCTTCATGTGCATTACTATCTGAACTCTATTTGGTTTTT TGTTTTCTATTACAGGCTGAGGAGTGCTTAAAACGGGAGAAAGATAGGGTTGGTCATTATTTGCACTCTACTAGTGAGCC AAAGTTATTAGAGGTGTGTTATTGACCACATGATACTATTTCAGCTATTGGTCACCTGCCGTGCGAGTGAAGTGTTGCTA GGCAACTTACAGAAAAACTGTTGATGATTATAATGGCTTTCTTTTGGCCTCATTTTATAGTTTCTTAACATTTCCCTTGT TTTTGTTCTTCTGGAATATTTCTCATTTAGAAAGTTCAACATGAGCTGTTATCCGTGTATGCAAGCCAACTCCTTGAGAA AGAGCACTCTGGATGTCATGCTTTACTTAGAGATGATAAGGTATTTATGATTTGCTATACCTACAAAATGTTTAACCATG AATTTAGTGTTCTCATATTTTCTTTTAAATGTTTAGGTTGAAGACTTGTCAAGGATGTTCAGGCTCTTTTCTAAAATACC TCGTGGCTTAGATCCTGTTTCTAGTATGTTTAAGCAGGTTGGTGGCATCAAACCTATGTTGATGCTTTTATTTTTCCTCC CTTTTCTATATGCCGATGTCTGATAAAAGTGAACCTTTGTCTTTTTTTTCTTTTTTGCTTTCGTACTTATCTCTCTCTCT TCTTTTCACAGCATGTTACCACTGAAGGTATGGCATTGGTGAAGCTGGCTGAAGATGCAGCTAGTAACAAAAAGGTCTAT TCCTGAATAAGTTACTCTACAGTTTTGCTTATTTCTGGTTGAGAGTATTATTTTCTAATTGCAACAGTTGAAGAAAGACT ATTATGCTTAGTTATTGCATGATATCCATTTTGTAGTGTCTGTTCAATGTTGCTTGTCCATGAGGAGATGAAGTAATATT TTTAACTTGAACTGTACATTATATTTTCAATTCACGTGTCTTGTCATGGCTCTTTCGATTTCATGGGATGTAGGACATGA TCTCGAAGTACCTTTACTGAAAAATTGATTGATTAATTGCCGCATTTTACATGTCATTTGATTACTTCTGAAGTTGTGAA TGATGTCACTTTTGGAGTGTTTTGTGTTTCCTACTTACCTTTCTATTTTGTGCTTGTAAATGGAAATGTTTGCAGGCAGA TAAGAAGGATACCATTGGTCTACAGGAGCAGGTTATTTTATAAATTATAAATTTATTGATTTTACTACAATATTTTCATT TGTGGATACTGAAATTGTTCTCTTTCTTCAGATTTTTGTTCGGAAGGTGATTGAGCTGCAAGACAAGTACATGGCATATG TGAACGACTGTTTCCAGAATCATACTCTTTTCCACAAGGTTTTGATTTGAGAGTGCCTTTACAACTATGTCGGATTGATA TGTGCATGTAAATCTAAAAGTTTTGATCATATAGGCTCTTAAGGAGGCTTTTGAGATCTTTTGCAACAAAGATGTTTCTG GGAACTCAAGTGCAGAACTTCTTGCCACCTTTTGTGATAACATTCTTAAGAAAGGAGGAAGTGAAAAATTGAGTGATGAA GCTGTTGAAGAAACCCTTGAAAAGGTCTGTATCATTCTTGATTCCCCAAATACTTCTATGACCTTGATGCATGTAGTTTT GACTTTTGAATTTGGGGTTTGTTTTGGTCACTCTGCAGGTGGTCAAGCTGCTCGCCTATATCGGTGACAAAGACTTGTTT GCTGAGTTCTATAGGTAAATTAAAAGAAAAAGTGAAAATTTGTGTGATCATTACTAGGTTTTGATAGCCCAAAAGAAGGG CTTGATATTGCTTTACTGGTGCTTCAATCTTCATTTTTCTGTTATTATTTCCAGTGTTGTCTAAGTATTTTGGTTCTGTT TCATTAACATTGCTGCTGCTTTTTCCTGGGTGTTTTTAAGAATTAAGTTTATTGGTGCATGAAGTTTTTCCTATTTTTGG AGATATTATTAATACCAATCTTAAGATACATTCACATTACCACTTAAGTTTTCTAGACAGTTGGTCATTTACATTGGTAA CATTTGGCAGACAGGTTAAAACGAATAAAACAGAGCATACACATTCATTCTATTTTATGATGGTTCATATGAAAAGTACA ATAGAACATAAGGTAAAAAATGGTCCATCTTGGTTTCAATAAAAATTGTCTTAAGTTGTGTACGTACACTACCATATTAT TAGAACCTATATGATCCAGAGGTTAGGAGTCAATCCTTGCCACCCTTATTCCTATGATTGAATCTTGGTCTTTCCATGTT TTGATCCAAAATTCACTTGGTTAGGAAGAGGTTGTATCAAGAGTTATGAAACCTATTTTGTTCCTTCATTTAACTGCTTA AGCAATTAAGAGAGCTAGTGCTCGAGACGTTTATTCATGTTTAAGTGGGATAATCAATGCACTTGCTTTAGCGGGATATT TGTTTTGGGAAAAACTTAAAAGCTGTGATGAATGGTTAGCAAAAATGAAATAGATAACAGTGGAGGACATATGGAAAGGA AGAGGAAAAGGAAATTTATTTTAATTTATCATATTTACTTTTATGCCTCTAGACTTATTATCAGTTTATTTGATGTATAT TTTAATGAGAAAGTATTATTTTGGAATTTAAGTGACCAAAGTGATAATGGGCAATGTTTTAACAATATTTTAACATGATG TTTATAGAAGAACAATTCACCATTGGAGCATCTTGTGATCCTCTGAAAAGATTTGGAGTGCCTTTATTAAATTTTATGCT TACACAATTACTTCCAAATGCTATTTTGGACATATATTTACCTTGACAATGTTTACTTCATTTTCTCAAGGCTAATTAAG ATCAGTTTTCTGTGGATATATCTAAATGTCAGTATTACCCTTTTTGTATAGGATTATTTGGATAACGAATAGTAATACAG GATTCTTGTTTGGTTGCTTTCAGGAAGAAGCTTGCTCGGAGACTTCTTTTTGATAAGAGTGCCAATGATGACCATGAGAG GAGTATTTTGTCAAAATTGAAGCAACAATGTGGTCAACAGTTTACTGTAAAGATGGAAGGAATGGTCAGTCTTAAGTTTT TCAAATTGGTGGCTGATATGCTAAATTCAACTTTTTTTGGTTGGTTGATAAGAGAAAAACTAAATGCTGTTTCGCTCCCT CCAGGTTAATGATTTGACAATGGCAAAGGAGAATCAAACAAACTTTGATGAGTATTTAAGCGATAATCCTAATGACACTG GGATAGACTTGACAGTCACAGTTCTGACTACTGGCTTCTGGCCTAGTTACAAATCTTTTGATCTCAATCTTCCAGCAGAA ATGGTATTCGGGATCATCTTGATATAACAATTTCGAATTTGGTGTTCTGCTTTTGACACAACTTAACCTTGATTCTGTAG TTTTTTGTCTATAATTAATACCTTCCTCTTTATTTCTTTTATTTTCTGTTCAGGTTAAGTGTGTTGAAATTTTTAAAGAA TTTTATCAGACTAAAACAAAGCAGAGAAAACTTACATGGATTTACTCCTTGGGTACCTGTAACGTAGTTGGCAAATTTGA TCCGAAAACAGTGGAGCTGGTTGTTACAACCTATCAGGTTATAGTACTTACTACCTTCTTATCTATAATTATATATATGC TATGCCCTCACTTCACTTAGTTGGAAAAGGCTTAGTTGTTACTGTTGCTGTTATGCCCTCACCTGTTTCATTTTTTCAAA CATGGGATATCCATAGATTCTTGTGTGAATTTCTTTCTACTGACCCCGTGTTATTTTATTTTTCGATAGGCTTCAGCGTT GCTGCTTTTTAATTCCTCAGATAGGCTGAGTTATTCAGAGATAATGACTCAGTTAAACTTGACGGATGATGATGTTATTA GATTGCTCCACTCCTTGTCCTGTGCCAAGTACAAGATTCTTAACAAGGAACCAAACACAAAAACAATATCAAATACAGAT TATTTTGAATTTAATTCAAAATTTACTGACAAAATGAGGAGGATCAAGGTATAATTTAATTTAAAAATAGTGGTTCAATC TCATCTCAATCTCTGCTATTCACCGGTTTTTGAGTGGAATTATGGCACGTTTTGATGCAGATTCCTCTTCCTCCTGTGGA TGAAAAGAAGAAAGTAATTGAGAATGTTGACAAGGACAGACGATATGCCATTGATGCCTCACTTGTGCGTATTATGAAGA GCCGAAAAGTTTTGGGGTACCAACAGTTAGTTATGGAATGTGTTGAGCAGTTGGGTCGCATGTTTAAGGTTCACACTTGT TCACTTTCCTAACATCATCTTGTGTCTTTTTTGGTCAAATACTAATTTTTTTTTATATCTTATATACTTGTCCAGCCTGA TGTCAAGGCAATTAAGAAGCGGATTGAAGATTTGATTTCTCGAGACTACCTGGAAAGAGAGAAAGACAATCCAAACATGT TCAGGTACTTGGCTTGA
CDS sequence (LotjaGi4g1v0344300.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAATGAGTGAGCGGAAGACTATTGACCTAGAACAAGGATTGGACTTCATGCTCAAGGGCATCACCAAGCTCAAGAA CATTCTTGAAGGCTTGCCTGAACCCCAGTTCAGCTCTGAGGACTACATGATGCTCTACACAACCATCTACAACATGTGCA CTCAGAAGCCTCCTCATGATTACTCCCAGCAACTGTATGACAAGTACAGGGAGGCATTTGAAGAGTATATCGTAACCACG GTATTACCTTCTCTGAGAGAAAAGCATGATGAGTTCATGTTGAGAGAACTTGTAAAGAGATGGACAAACCATAAGGTTAT GGTTAGGTGGCTCTCCCGCTTCTTTCACTATTTGGATCGCTACTTCATTGCTCGGAGGTCACTTCCAGCCCTTAATGAAG TTGGGTTGACTTGCTTCCGTGATTTGATTGATCAAGAACGTGAGGGAGAGCAGATAGATCGAGCTCTATTGAAAAATGTA TTAGATATCTTTGTTGAAATCGGAATGGGGCAAATGGATCAATATGAGAATGATTTTGAAGCTCCCCTGCTGAACGACAG TTCTGCTTACTATTCTCGGAAAGCTTCAAATTGGATCCTAGAAGATTCTTGTCCTGATTATATGCTCAAGGCTGAGGAGT GCTTAAAACGGGAGAAAGATAGGGTTGGTCATTATTTGCACTCTACTAGTGAGCCAAAGTTATTAGAGAAAGTTCAACAT GAGCTGTTATCCGTGTATGCAAGCCAACTCCTTGAGAAAGAGCACTCTGGATGTCATGCTTTACTTAGAGATGATAAGGT TGAAGACTTGTCAAGGATGTTCAGGCTCTTTTCTAAAATACCTCGTGGCTTAGATCCTGTTTCTAGTATGTTTAAGCAGC ATGTTACCACTGAAGGTATGGCATTGGTGAAGCTGGCTGAAGATGCAGCTAGTAACAAAAAGGCAGATAAGAAGGATACC ATTGGTCTACAGGAGCAGATTTTTGTTCGGAAGGTGATTGAGCTGCAAGACAAGTACATGGCATATGTGAACGACTGTTT CCAGAATCATACTCTTTTCCACAAGGCTCTTAAGGAGGCTTTTGAGATCTTTTGCAACAAAGATGTTTCTGGGAACTCAA GTGCAGAACTTCTTGCCACCTTTTGTGATAACATTCTTAAGAAAGGAGGAAGTGAAAAATTGAGTGATGAAGCTGTTGAA GAAACCCTTGAAAAGGTGGTCAAGCTGCTCGCCTATATCGGTGACAAAGACTTGTTTGCTGAGTTCTATAGGAAGAAGCT TGCTCGGAGACTTCTTTTTGATAAGAGTGCCAATGATGACCATGAGAGGAGTATTTTGTCAAAATTGAAGCAACAATGTG GTCAACAGTTTACTGTAAAGATGGAAGGAATGGTTAATGATTTGACAATGGCAAAGGAGAATCAAACAAACTTTGATGAG TATTTAAGCGATAATCCTAATGACACTGGGATAGACTTGACAGTCACAGTTCTGACTACTGGCTTCTGGCCTAGTTACAA ATCTTTTGATCTCAATCTTCCAGCAGAAATGGTTAAGTGTGTTGAAATTTTTAAAGAATTTTATCAGACTAAAACAAAGC AGAGAAAACTTACATGGATTTACTCCTTGGGTACCTGTAACGTAGTTGGCAAATTTGATCCGAAAACAGTGGAGCTGGTT GTTACAACCTATCAGGCTTCAGCGTTGCTGCTTTTTAATTCCTCAGATAGGCTGAGTTATTCAGAGATAATGACTCAGTT AAACTTGACGGATGATGATGTTATTAGATTGCTCCACTCCTTGTCCTGTGCCAAGTACAAGATTCTTAACAAGGAACCAA ACACAAAAACAATATCAAATACAGATTATTTTGAATTTAATTCAAAATTTACTGACAAAATGAGGAGGATCAAGATTCCT CTTCCTCCTGTGGATGAAAAGAAGAAAGTAATTGAGAATGTTGACAAGGACAGACGATATGCCATTGATGCCTCACTTGT GCGTATTATGAAGAGCCGAAAAGTTTTGGGGTACCAACAGTTAGTTATGGAATGTGTTGAGCAGTTGGGTCGCATGTTTA AGCCTGATGTCAAGGCAATTAAGAAGCGGATTGAAGATTTGATTTCTCGAGACTACCTGGAAAGAGAGAAAGACAATCCA AACATGTTCAGGTACTTGGCTTGA
Protein sequence (LotjaGi4g1v0344300.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSMSERKTIDLEQGLDFMLKGITKLKNILEGLPEPQFSSEDYMMLYTTIYNMCTQKPPHDYSQQLYDKYREAFEEYIVTT VLPSLREKHDEFMLRELVKRWTNHKVMVRWLSRFFHYLDRYFIARRSLPALNEVGLTCFRDLIDQEREGEQIDRALLKNV LDIFVEIGMGQMDQYENDFEAPLLNDSSAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVGHYLHSTSEPKLLEKVQH ELLSVYASQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSSMFKQHVTTEGMALVKLAEDAASNKKADKKDT IGLQEQIFVRKVIELQDKYMAYVNDCFQNHTLFHKALKEAFEIFCNKDVSGNSSAELLATFCDNILKKGGSEKLSDEAVE ETLEKVVKLLAYIGDKDLFAEFYRKKLARRLLFDKSANDDHERSILSKLKQQCGQQFTVKMEGMVNDLTMAKENQTNFDE YLSDNPNDTGIDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEIFKEFYQTKTKQRKLTWIYSLGTCNVVGKFDPKTVELV VTTYQASALLLFNSSDRLSYSEIMTQLNLTDDDVIRLLHSLSCAKYKILNKEPNTKTISNTDYFEFNSKFTDKMRRIKIP LPPVDEKKKVIENVDKDRRYAIDASLVRIMKSRKVLGYQQLVMECVEQLGRMFKPDVKAIKKRIEDLISRDYLEREKDNP NMFRYLA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 727 | 725 | 0.0 | – | |
| PANTHER | 3 | 727 | 725 | 0.0 | – | |
| Gene3D | 4 | 136 | 133 | 1.6E-37 | – | |
| SUPERFAMILY | 12 | 368 | 357 | 1.23E-97 | ||
| Pfam | 25 | 630 | 606 | 4.2E-171 | ||
| Gene3D | 137 | 247 | 111 | 9.3E-36 | – | |
| Gene3D | 251 | 373 | 123 | 1.7E-41 | – | |
| SUPERFAMILY | 371 | 640 | 270 | 2.35E-91 | ||
| ProSiteProfiles | 373 | 602 | 230 | 50.064 | ||
| Gene3D | 374 | 485 | 112 | 1.4E-36 | – | |
| SMART | 404 | 552 | 149 | 1.9E-72 | ||
| Gene3D | 489 | 643 | 155 | 4.0E-52 | – | |
| SUPERFAMILY | 641 | 727 | 87 | 6.96E-26 | ||
| Gene3D | 644 | 727 | 84 | 3.9E-29 | ||
| SMART | 654 | 721 | 68 | 5.4E-33 | ||
| Pfam | 657 | 719 | 63 | 3.5E-24 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Ubiquitin-dependent protein catabolic process | The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein. | ||
| Molecular function | Ubiquitin protein ligase binding | Interacting selectively and non-covalently with a ubiquitin protein ligase enzyme, any of the E3 proteins. |
Expression pattern of LotjaGi4g1v0344300.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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