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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0349000 |
| Transcript ID | LotjaGi4g1v0349000.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Small nuclear ribonucleoprotein; TAIR: AT2G47640.2 Small nuclear ribonucleoprotein family protein; Swiss-Prot: sp|Q9VI10|SMD2_DROME Probable small nuclear ribonucleoprotein Sm D2; TrEMBL-Plants: tr|G7LBH6|G7LBH6_MEDTR Small nuclear ribonucleoprotein; Found in the gene: LotjaGi4g1v0349000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:72775745..72779925) extracted from Lotus japonicus Gifu genome v1.2.
CATTACTCCAGAAACCCCAGTTCTAATTTTTGATGGGGTCAATATAAACCCTAATTCTTACATTCTTCACTTTTCTTCTC GACTCTGCACATCTCTCGCTCTTGCTGTGGTGAGTTCCTCCTCCTACTCTCATGCTTCTTCTTCTTCTTCCGAGTTATCC ATGCGGAAATTACATGATGTTTCTCAAATTTCTATCATGATGTTTCTTATTCTTTGCAATTATTTATAATTTATGTATCT AGCTCCTTATTTTCTCTATTTTATTTTCCATTTGACTGATTTTCTCTCTTATGCTGGTTTTTTTGAAGGATTTTGCAACT GCTCTGCTGTTTCTTCCAAAATGAGGTATTTTTTTTGCTGAATTTTGTATCAATTTTTTCTGCTTTTTAATTATATACTA ACATTTTGTTTTCTCTTTTCAAGCCGCCCAATGGAGGAAGATGTAAGTTCTTATATCCCTTTAATGCTTGTTCTCCATCT TCTGTATACATTTATGCAATTTGTTCGCGTATTATCTTAATTAATTTTACCATTTATGCTAATGCTTTAAATACCATGCA AACAATGAAATCTTTGGTTTTGGTTTATTGGACTGCTGTAATTTGTCTGTGTTATGGCTCCATTTGTGTTAGATTTTAGT GAGAGCTTGTACGCTTTTGAATGTTGTACTTTTGTGGAATTTCTGTTGAACCCCCCCAAATTTGGTTTCACCATTTGCTT AGCCAGGGATATTTTAGTTTATGATGTCTACCTAGATCTTTCCGCCTAGATTGGGTTGCAGGTTGTGAACAGAAAATGAT CTGTTAAACTTGGAAGCCTGAAGTTAGTAGCTATGTTTCCATTATATGATGTAGTTGTTTGAGATCATATGGAAGGGAAT GTTCTTTGTTGCTAGAATTCTAATTTTAGCCATTTCTCTCTTCATGCTTAACAAATTGATTTCCCTACTGTACTGTTTTT TTACCTTTTAATCTCACCTAGGCTGTTACTGTGCTTTAATATTTTTTGTAGTTAACATGCTTAATTGTTACAGGCACCAG GTAAGAATGAGGAAGAGGAATTCAACACTGGACCACTATCTGTCCTCATGATGAGTGTTAAAAATAACACCCAGGTATGT TTGTTTTTAAATCATGTAGTACTATGAGTTCTCACTTCTTAGGCAGTCCAGAAAGGTAGTTGATGTGTTTTACTTCACCT ACGCAGGTACTCATAAATTGTCGGAACAACAAAAAGCTTCTGGGTCGTGTCAGGGCTTTTGATAGGCACTGCAACATGGT TCTTGAAAATGTCAGAGAAATGTGGACCGAGGTATGGTTTGTTACTTCGTTTTATTTTCTTTCCCTTACTAGTTACTACA TCATCTAAATGCTGTGTGTGTACAATCAGGTGCCTAAGACTGGTAAAGGAAAGAAAAAGGCTCAGCCTGTCAACAAGGAT AGATTCATCAGTAAAATGTTCCTCCGCGGAGATTCTGTCATCATCGTCCTCAGGAACCCAAAATAAGCTAGTAACTTGTT CATCAGTTTGAGTTCTGAATAGGTATTTCGTTCAGGTACGGGATGGCATCCTTGGGGGAGCTAATGCTTTAAATGTTTGT GCTAATTTCGTGCATGCAAACAATGAAATCTGTAATTTTCAATGTGTTATGGTTCCATTTGTGTTAGGTTTTAGTGAAAG CTTATTCAACTTGGTGTAGCTTTTGAATGTAGTACTTTTGTGGAATTTCTGTGGAACTTTTCATTGAAGATCCCCCCCCC CCCCCAAATTAGGTTCCTGAGTTATTGGATAAACAGCAAGATGAGTACATTAACTTTGGAATGTGCCGTTGTCTTTGGTT GTTGGCTTCTACAATAATTTTGTTGCTCCCTTTTGCTTTTTGATTTGAAAATGAAGTTCAATTTGGAGACAATTACTATT ACAGGCATGTTTTGATCGGTCATATGTGATGTGACAGACAGAAAATTATGCCGTGAGTTAGTGACTTCTCATTTTGGCAT TATTCTGCAATTAAATGTTTGGTGGACATATCATAGCTTCTCGTAGTATAAGTGCAATAGAAAAAACTTGCTACTGATCC CATCATTGTCGTTTTTTTTTTGTTTTCAGTTGATTTTGGTAGTAAGGATGTAGCACCAGTCAAAATTGCCTGTTTCTAAG CAGAAATTATGCAGCAAAAGGGGCATTTGCTTGTACGAAATATGATTGTTTTCCGATTTCCTATTCTAAGGTTGAATTCA AATGCTTAGTAGCAGTTTATGCAAGGTTCTTGATATATAAATATATGTTTCTGCTTGACTAGGAAGTGTTCCTTGAGTTT CATTTCCCTTTCATGCTTAGATTTATCATCTATTAGTTCCATGTGCTAAGAGTACTTCTTGCATGTCATTATTATACTTT CGACTTAACTATGAATTTCTTTGGGGAGTTCATTTGCTTTCAAGTTGTAGATTTTCAGTCTGCAATTTTTATTTGTAACA GAAACTGCACATCATTGATTATTATGTTGTGACGCATTAAGTAGTATATGGTTGACAAATAAATAAGTGTACTTTTTTAA AAAAATAGTGCAACACAGAATTCAAGCTTGTTCTAATATAAAAGACCAAATCATGCCGCTAATTTTGTTATAACGAGGAC CGGATGGAGGAGGGAGTAGTTTATGCAGTACACAATTTTTTATTTCAGATGGAAGTGACAACCGCATCCAGCATTGTTTG TTAATTTCATTAAACAATAATTTGTGAAGTTAAATGATGATCATGGTTGTTCGAAACTTAACTAACCACTTCATTTTGCA TCAACCATTTCTACAAACAAGACTACAGAGGTTAAAAGTAGACTCTGACGACATTTTATGACTTTGATGTTGGTTGTGTG AGCCTAACACATATAGTTGAGGAGGAAAATATTAGAGGATGCTTATCATTATTTTTGAATTATGGGTTCTAACAAAATGT ATTAAGATATGAAGAAATTGTATTTATGGGAAATGATGAAGAAAGACCTAGAAACTTGATCCCGAATGTTTAGCATGTCT ACAAGTGAAGGTTGAGCATTAAAGCAAGTAATGTTGCTTCAAGTTATTGAGATACCTTAGGGGAAGTGAGAAGCTGTTGT AATGAACTTGGTGAGAGATTTGTTTAGGAATTTAATGCGTTATGATTTTATATCGGTGATTATGGATCAAATGGCTGAGG ATGAACATTTCTTGCCTATGCTGCTATGTCTACTAAGATTTACCTTGGATGAGATTGTTGTTTGCTTGGTATAAGCAAGT CTATGATTTCAAATCAAGGAGCTCAATTGAGTGCACAATTTTAGAAGACTTTTCAAAATTGTTGTGGGTATCAATCAAAT TTGGGTACAACTTTCTATGTAAACTGATAGCTAATTTGAGAGGACTATCAAGGTATTCGAGAATATATTTCATGCTTGTG TTTTATAATTTATAGGGAGTTTGAATTTGTACTTGTTTTATTGGAATTCGTTTATACTAACAACTATCAGTCATGCATAC AAACGACACCATTTGAGGTCTTGTTTGGTGAGGTAGATCACTAATAGGAAGTTTTGAAGTTAGGGAGAGCTAAGTCCAAG ATTCATTGAACCGTTTGAGATCTTAGAGGGAGTTGACCTTGCAGATTATGGATTAGCACATCCCCTAGATCTTTCAGCAG CTCATCAATTTTTTCATATTCCTATGCTTCGAAAATACCTATATGATCCATCCCACACCGTTCGTAATTAGATAAACATT GATCTCATATGGAATGTCTGGTGGTCATAATTGATAGAAGAGTGAAGCGTCTGTTATAAGATTATTGGTTCAGTTAAAGT GTTTGGACGATAATTATATGGCAAAGGGATGATTTGGGAACCATGATAATCATGCGTGAGAAGTATCCCCTCTTATTTGA AACCCAAGGTTAGTTAAAGCTTCAAAATTTGAGGACGAATTTTCCTTAAGGGGGAAGATTGAAACGATATGTGTTTCTCT TATAAAAAATAATAATATATAATAATAGTAGTAATTAAAGCAAAACAAAGGGAAATAGAAAAAAAACTAAAACTTACCTA CAAAAAAGAATAAACCCACGACAGCACCACCCCACCCATTACATTACATATTTCCTAATTCAAAAACCCATTCCCATAAC CATGTGCGAGACATTACGGGC
CDS sequence (LotjaGi4g1v0349000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGCCGCCCAATGGAGGAAGATGCACCAGGTAAGAATGAGGAAGAGGAATTCAACACTGGACCACTATCTGTCCTCAT GATGAGTGTTAAAAATAACACCCAGGTACTCATAAATTGTCGGAACAACAAAAAGCTTCTGGGTCGTGTCAGGGCTTTTG ATAGGCACTGCAACATGGTTCTTGAAAATGTCAGAGAAATGTGGACCGAGGTGCCTAAGACTGGTAAAGGAAAGAAAAAG GCTCAGCCTGTCAACAAGGATAGATTCATCAGTAAAATGTTCCTCCGCGGAGATTCTGTCATCATCGTCCTCAGGAACCC AAAATAA
Protein sequence (LotjaGi4g1v0349000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSRPMEEDAPGKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKK AQPVNKDRFISKMFLRGDSVIIVLRNPK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 20 | 20 | - | – | |
| PANTHER | 4 | 108 | 105 | 8.7E-73 | – | |
| PANTHER | 4 | 108 | 105 | 8.7E-73 | ||
| Gene3D | 16 | 108 | 93 | 4.1E-40 | – | |
| CDD | 18 | 107 | 90 | 3.12771E-62 | ||
| SUPERFAMILY | 21 | 106 | 86 | 1.02E-25 | ||
| SMART | 26 | 105 | 80 | 5.1E-20 | ||
| Pfam | 29 | 103 | 75 | 6.4E-19 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | RNA splicing | The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA. | ||
| Cellular component | Small nuclear ribonucleoprotein complex | A complex composed of RNA of the small nuclear RNA (snRNA) class and protein, found in the nucleus of a eukaryotic cell. These are typically named after the snRNA(s) they contain, e.g. U1 snRNP or U4/U6 snRNP. Many, but not all, of these complexes are involved in splicing of nuclear mRNAs. |
Expression pattern of LotjaGi4g1v0349000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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