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LotjaGi4g1v0351800.2

Overview

Field Value
Gene ID LotjaGi4g1v0351800
Transcript ID LotjaGi4g1v0351800.2
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description 26S protease regulatory subunit; TAIR: AT5G58290.1 regulatory particle triple-A ATPase 3; Swiss-Prot: sp|P54778|PRS6B_SOLTU 26S protease regulatory subunit 6B homolog; TrEMBL-Plants: tr|V7BPD9|V7BPD9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0351800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:73047931..73051590) extracted from Lotus japonicus Gifu genome v1.2.

GAAATTCTTTAATTTGCTTTATCTCATGCAATACGGCGTCGTTTTCGGTATTATAGAGCCTAGAATCGATTCTAATCCCA CACGAAGAACCAAACCCTTTTCCCCATCGATTTTCACTCTTCATCGACGAAAATGGGATCTTCAGCGATGGTTTTGGACC CAAAACCCGTATCGGAACCGCCACCGTCGTTTCCATCGACGAAATCCGGCTACCTCTACGGCGGCGATATTGCCTCCGAC GAAGACGACCTCTACAGCCGCCTGAAATCGCTGCAGCGGCAGCTGGAGTTCATCGATATCCAGGAGGAGTACGTTAAGGA TGAACAGAAGAATCTGAAGCGGGAGCTTCTTCGTGCTCAGGAGGAGGTTAAAAGGATCCAGTCGGTTCCTCTGGTTATTG GCCAGTTCATGGAGATGGTGGATCAGAACAATGGTATCGTTGGATCCACTACTGGATCCAACTACTATGTTCGGATTCTT AGTACTATCAATCGCGAGCTTCTCAAGCCTTCCGCCTCCGTCGCCCTCCACCGCCATTCCAATGCTCTCGTCGATGTTCT TCCACCGGAGGCAGATTCCAGCATCTCTCTTCTCAGCCAGTCTGAGAAGCCAGATGTTACTTACAATGTTAGTTAGGGTT TTGCTTTCAATTTTCCCTAATTTCGGCTTAATTTTTTAATTGGAGATTGCTTGATTGATTATTAGGCTTAGTTGTTGTGG AAATTAAAATTTAGGTCTTGTGTTTGTTGTTTGAACTATTTGGGTATAATCAGAATCATGATAGGAAGAGGGCATTTTGC TTTGAGGGAAAGGGTAATGGTTAGTTTGCTGAGGAGGGTCATGACTGAATTTGTGTTTGTGTTACTTAGGGAGTGTGTTT TTGTTTTTCATTGGTGCAATTTTGGATTGATAGTTAGCCTCTCCCTCAGCAGCATGTGACCGTGGAAAATGTCTACTTTG TTCAGTAGAATTCAAGTGTCATGGGTTAATAATTGCAATATTGCAATACAAGCAAGAGAAGACTATTCCTGTTTCAAAAG TGAGAGTGAGAGCCATAGATAGATAGGGGGCGGGGGTTCCTGAGTTTTCCTGCTTCAGAAGTTATAGTGAGACACTGAGA CCCATAGATGAGCTTGATTGGGGGAGGGGGTTCATTTGGTTCTTTATTGTAGCTTGGAATCCTGAATGCCAGAGGTTACA ACTTACAATTCATTTAGTTACATGTTAAGTGCTGTTGGGTCTACCAGGTTGTAGAGCAGTAAAATAGGAACTTAAATACT AGGTCCATCATTCTGTATGGGCATGAATTTGGCCTTCCAAGAAATGAGATGGAGTGTAACAAGGAAAATGAAACCGATGG TGAAGTGTATATGATACGGGCAGTCAGGCACATTATTTCTGGAGCATAATTGGTTTTGGTCTAGCCAATGATACTGATAC TAACAAGTATAAACATTTGATTTTTGTGGCATACTCCTATATTTGTTAGACCTCCTGTGTTGTGTGAATTCTCTTTCAAT TTAAACTATTTTTTGTATGGCCTGTTGATATGGTTTTGATTTGTTTTAGGACATTGGAGGGTGTGATATCCAAAAGCAGG AAATTCGTGAGGCTGTGGAGCTACCCCTTACACATCATGAGCTATACAAACAAATTGGTATTGATCCTCCTCGTGGTGTA CTACTATATGGTCCCCCTGGCACTGGTAAAACCATGCTGGCTAAGGCTGTTGCTAATCATACCACTGCTGCCTTCATCAG GGTTGTGGGATCTGAGTTTGTGCAGAAGTATCTTGGCGAGGTATCGATTTCATGTCATTTGAATTTGAAGTGATGTTATT AATGTTGTAACTTTCTCTGTTTTATTAGTTTGCTTTTGTAGATTATGCATTTCAGGTTCACAATTATTGATGTTATTGTG CTCTTCATGTTTTGTACTTGTGTTTAAAGATTGTGGATCATCTGTCCACGATCATAACTACGTAGTTCCTGAAATTTGTT GGGAGTTTCAAAAATTTTATTCTCTTCCTAAAAGATGAATTAATTGTTTACTAGTGGTTTGTTGCAACATCTTCTAATAT TATCTACTATCTACGTTTCAGGGTCCAAGGATGGTTCGTGATGTATTTCGGCTTGCGAAAGAGAATGCCCCTGCAATTAT ATTCATTGATGAGGTTGATGCAATAGCTACTGCTAGATTTGATGCACAAACTGGAGCTGACAGAGAAGTACAACGTATCC TCATGGAACTTTTGAATCAGGTATCTTCAAAAAGTTATTTCTATCAGGTTCTTTGAATGTGTTTAACAATGCATTAATAT GTGCTAAGCTATACTGAGTAACATTGATTTAGTCTTCCCTTATATTCTTTGATTTGACTACTCAGCACTTCCTCTTTGGT TTTAGATATTCTCTGAAGTGCTGGTTTAACAGACTTTTCTTTGCTTCAGATGGATGGTTTTGACCAAACAGTGAATGTTA AAGTGATTATGGCAACTAATCGGGCAGACACTTTGGATCCTGCTCTTTTGCGTCCTGGAAGGCTTGATCGCAAAATCGAG TTCCCTTTGCCTGATAGACGCCAAAAGAGGCTTGTGTTTCAGGCAAGTCTTTCACATTTCTTTCTGTTATAATTTCTTAC TGAGTCAGTATTCCATGTTTATGCTCAACTATCATATTTTGAGAAGTTCCAGTTTGATTTGCAAACTTTCATTTGTTTTT ATATTGAATATCGAATTATCTAATATTTTATTTTCAGCTGCTTTTCAATCTATTATTTAATGGTTTATTTTTTAACAGGT TTGCACAGCCAAGATGAACTTAGGTGATGAGGTGGACCTGGAAGATTATGTTTCTCGACCTGACAAAATTAGTGCTGCGG AGGTTTGTTCATATCTTATCTGATAATTTTCACGATGCTAATCATTTTTTGTACAAAGACTTTGTTACTAATTGCATGAT CAGAAATGGTTGATTAATCTGTCGAATTTGTTTGAACTATTTTTGTTCTTCTCCTCCATCATCTTGCAAGAAGGCTTAAA GCAATTATGAAAGTGTTTTTCTTTAGGAGTTTTTGGCAGATTCATTCAGAATCTCTTTGTTCAACAATTTTCTGATACAT AGTTGAAGACTTGCGTACAAAATATGCTTTGCTTCTTTTGATAGTTTCATTTTGAATTGTTAACTGCTACCTGAAAGACT TGAGCTATTGTTTGTATTATATAAATGACATCAATTATTTCATGATTTTGGTTCCTGCAGATATCTGCCATTTGTCAAGA AGCAGGAATGCATGCTGTTCGTAAAAATAGATATGTCATACTTCCAAAGGACTTTGAGAAGGGTTATAGGACGAACGTGA AGAAACCTGATACTGACTTTGAATTTTACAAGTAATGATGAGGGTTTTCTGAAAGTTTTTTATTTGTGGTAGTTTTTTTA GTTGCAGAACTTATGTAGTTAAAGGGTACATTTCTAGAGTAGTCTGGGTTATGTAATATTCACGAGAAATTATACTATAT GTTTTGTTTTTTTATTTCTCTTCAATTCTGTGTGTTTCATTTTCATATTCCAAAATTGTTATCTGAAATGAATGAATAAA TATCTATCATTTTCATTCTAAGGTCAATGAAACCATGTTAATGAAACCATGAGAGTATTT
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0351800.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGATCTTCAGCGATGGTTTTGGACCCAAAACCCGTATCGGAACCGCCACCGTCGTTTCCATCGACGAAATCCGGCTA CCTCTACGGCGGCGATATTGCCTCCGACGAAGACGACCTCTACAGCCGCCTGAAATCGCTGCAGCGGCAGCTGGAGTTCA TCGATATCCAGGAGGAGTACGTTAAGGATGAACAGAAGAATCTGAAGCGGGAGCTTCTTCGTGCTCAGGAGGAGGTTAAA AGGATCCAGTCGGTTCCTCTGGTTATTGGCCAGTTCATGGAGATGGTGGATCAGAACAATGGTATCGTTGGATCCACTAC TGGATCCAACTACTATGTTCGGATTCTTAGTACTATCAATCGCGAGCTTCTCAAGCCTTCCGCCTCCGTCGCCCTCCACC GCCATTCCAATGCTCTCGTCGATGTTCTTCCACCGGAGGCAGATTCCAGCATCTCTCTTCTCAGCCAGTCTGAGAAGCCA GATGTTACTTACAATGACATTGGAGGGTGTGATATCCAAAAGCAGGAAATTCGTGAGGCTGTGGAGCTACCCCTTACACA TCATGAGCTATACAAACAAATTGGTATTGATCCTCCTCGTGGTGTACTACTATATGGTCCCCCTGGCACTGGTAAAACCA TGCTGGCTAAGGCTGTTGCTAATCATACCACTGCTGCCTTCATCAGGGTTGTGGGATCTGAGTTTGTGCAGAAGTATCTT GGCGAGGGTCCAAGGATGGTTCGTGATGTATTTCGGCTTGCGAAAGAGAATGCCCCTGCAATTATATTCATTGATGAGGT TGATGCAATAGCTACTGCTAGATTTGATGCACAAACTGGAGCTGACAGAGAAGTACAACGTATCCTCATGGAACTTTTGA ATCAGATGGATGGTTTTGACCAAACAGTGAATGTTAAAGTGATTATGGCAACTAATCGGGCAGACACTTTGGATCCTGCT CTTTTGCGTCCTGGAAGGCTTGATCGCAAAATCGAGTTCCCTTTGCCTGATAGACGCCAAAAGAGGCTTGTGTTTCAGGT TTGCACAGCCAAGATGAACTTAGGTGATGAGGTGGACCTGGAAGATTATGTTTCTCGACCTGACAAAATTAGTGCTGCGG AGATATCTGCCATTTGTCAAGAAGCAGGAATGCATGCTGTTCGTAAAAATAGATATGTCATACTTCCAAAGGACTTTGAG AAGGGTTATAGGACGAACGTGAAGAAACCTGATACTGACTTTGAATTTTACAAGTAA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0351800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGSSAMVLDPKPVSEPPPSFPSTKSGYLYGGDIASDEDDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVK RIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKP DVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYL GEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPA LLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLGDEVDLEDYVSRPDKISAAEISAICQEAGMHAVRKNRYVILPKDFE KGYRTNVKKPDTDFEFYK
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 26 26 - –
PANTHER
PTHR23073
27 414 388 8.5E-246 –
PANTHER
PTHR23073:SF8
27 414 388 8.5E-246
IPR035256
Gene3D
G3DSA:2.40.50.140
46 154 109 2.5E-28 –
TIGRFAM
TIGR01242
47 401 355 1.6E-134
IPR005937
Coils
Coil
58 85 28 - –
Pfam
PF16450
89 144 56 5.9E-9
IPR032501
Gene3D
G3DSA:3.40.50.300
155 335 181 1.4E-69 –
SUPERFAMILY
SSF52540
160 404 245 3.31E-65
IPR027417
CDD
cd00009
168 335 168 6.78132E-29 –
SMART
SM00382
198 337 140 1.5E-23
IPR003593
Pfam
PF00004
202 335 134 3.1E-44
IPR003959
ProSitePatterns
PS00674
305 323 19 -
IPR003960
Gene3D
G3DSA:1.10.8.60
339 418 80 2.8E-19 –
Pfam
PF17862
358 400 43 9.9E-8
IPR041569

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0005737
Cellular component Cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
Subterm of
GO:0016787
Molecular function Hydrolase activity Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
Subterm of
GO:0030163
Biological process Protein catabolic process The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds.
Subterm of
GO:0036402
Molecular function Proteasome-activating ATPase activity Catalysis of the reaction: ATP + H2O = ADP + phosphate, which promotes unfolding of protein substrates, and channel opening of the core proteasome.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0351800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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