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LotjaGi4g1v0387500.1

Overview

Field Value
Gene ID LotjaGi4g1v0387500
Transcript ID LotjaGi4g1v0387500.1
Lotus japonicus genome version Gifu v1.2
Description Ubiquitin-like domain-containing CTD phosphatase; TAIR: AT4G06599.1 ubiquitin family protein; Swiss-Prot: sp|Q8W3M6|UBCP_ARATH Ubiquitin-like domain-containing CTD phosphatase; TrEMBL-Plants: tr|I3SL87|I3SL87_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0387500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:76609750..76613482) extracted from Lotus japonicus Gifu genome v1.2.

AAGTGCACACAACACAACACAATACTCGTCATAAGGGACAGACAGCTACTGTACTCACCGAGGGTTGCAGAAGTGTGTGT GACTGAGGCTGAGGTAGAGGCAGAGAGACATGGCTTCTTCATCTTCAGTGCCATTGCCACCGTCATCGGAGGAGGAGATG ACACTCAAGGTCAAATGGGCCGGCAAGGATTACACCGTCCGAGTCTGCGGCGACGACACCGTCGGCGAACTCAAGCGTCG AATCTGCGAGCTAACCAACGTTTTACCCATTCGCCAGAAGCTCCTGTACCCTAAACTCGGTTCTAAACTCAACGATGACA CACTCTTACTCTCTCAACTCTCCCTCAATTCCGCACTCAAGTTCACCATGATCGGGTTCGCACTTCGCCCTACCCTCCCT TGTTTCTTCGTTTGTTAGGGTTTCATATTAATTTGATTTGATTTGATTTGATTTGTTTTGCATTTCAGGACTACTGAAGA AGATTTGATTGTGGATCCAGTGGAGGCTCCTGAGATTATTGATGATCTTGAGCTTCCTCAAGAAGAAGCTATTGACATCA AAGACATGGAAGTCAACAAGCACAAGTTGACTAGGCGCATTAATCAGTTCAAGGTATGTATTTTCATCATTTTCAATCCA CTCTGCTTAGCATTTTAGGACTTGTATTGTATCTAATCCTGTTATTGTTTTTACCATGTAACTTGCAGGTTGAGCTTCTA AACCCGTGTCGAGAAGGAAAGAAACTCCTTGTTCTGGATATTGATTACACCCTTTTCGATCACCGGTCCACTGCTGAGAA CCCTCTTCAACTTATGAGACCTTGTATTTTACCCTCTTCAACTATCTACTATAATTTTATTTATAATTTCGGGACAAGCT TTAATTTTTACTTCATCCTAATTAACACACCCTTTGGGACGAAGCGGAAGTTTTAGATAATTACAGTGTTGTTAAATAGC GGATATTACGGTGCTATAGCGTAGCCCTCCGAGGGCTCACTGCTATTTTCCGCTCGAGGGCAGCTTGACATAGGGGAATT TTGGCTTTCCACTATTTTGTGTGATCCGCGTTTAACCACACTGGATAATTCCTTGTTTCACTTCTGAGTTTGTTTAGGGT CGTGGTATCGTAGGCTCTTTTACATTTATTCATTAATCAATTATTGTGTATGGGAATGCAATTTTCCTTTTTTTTACCTT TTCATCTTGTTTGTAAAGTTATGATTTTTTTTTTCCTTCTGCAGACCTTCATGAGTTTCTTGCATCAGTTTATTCCGAGT ATGACATTATGATATGGTCTGCGACCAGGTGCGATCATCTACTCTGTTAAATTCTTATTCTTTTGGAAGAATAACCCTTC AAGGCTGCAACTTGAATGGTTTTAATGTTTTTCTGCAGCATGAAATGGATTAACCTTAAGATGGGACAACTTGGGGTTCT GGATAATCCTAACTACAAGATCACAGCGCTTCTTGACCACTTAGCAATGATCACTGTTCAGACGCCTTCTCGTGGGGTCT TTGACTGCAAGCCACTTGGTTTGATCTGGGCTAAGTTCCCTGAGGTATGATGTATAACATGCCATTTGTTTTTCCTTCTT TATGTTTACAAATTGAAAACTAGTTTGGACAAACTTCTCATTGAACACTTGTAGGAAAAGGAGATTGTAATGATCTTGGA ATGAATATGTGCCTTCCAAATAATAGCTTCCTCCATAGGTCGAAATTGATTTCTGCACCTCAACTTTTTTCAAAAGTTTG CTCATTTAACTTGTGTATAAACACCTATAGATTTTTAAGTACTTTTTCCAATGATAGGAACCAAATGCTTACAGCTCCTA TAAACATAGTACTCAAAATCGCGATTCAAATCGCCAAATCACAAATCCCTCTAAATCGGTATGGAATCGGACCAAAATCG TGAAATCAGATCAAAATCGCCATTTAGGTAGTTTTTGCGATTTAGTGTGATTTATTTCCTTACAGGTTTTGACCTGTTTT TTTGCTCGACCCAATTGCTAAAATCCCTATTTTTCAAGGGTTTGAAACACAAACCCTCCCTATTCTAACAAACACTCACT CACCTCAAAGAAACCACAGCGACTTTGACCTTACCAAGGGATCTGCAAGCAGCGACAATGGCCACTAGCGATGACGACGG CATTGGCGATGTGACCGCTCTTCTTCAGTTTTTCCTCCCCTGTTCTCTGTTGAAGCTCCTCTGTTCCCTTGTTCTGTGTT GAAGGTCCCCGTTATGTTTTATGACACTTTACGGCCTATGCACATAAGAATTTATATGCGTATATATAGAAACTGCTAAA TCTCGATTTATGATTTACAAATCCCCTCCTCGATTTAGGCCGTAAGTCCGATTTTGATTACTATGCTTATAGGTTAATCC AAACTAGGCCAAAGTTATGTTATCATATATTATTTTATCATACATATCTACTACTTTGTCGGGCAACTTCATCTTCATGA AAATCCAAAAGATGTTTACTTATTTTGAGTATTACAGTAAGTAACATAAACCTAGGGTGGGTAATGGAGCTTATTCATTG AAGTTAAAAAAAAAGGAAAATGTAACTGTTGACATATCAGTTTTGTTGTAAGCTGAATCTATTTTGAATTTTTGCACTAA TAACTCATGATCTTGTTGTCTTGATGGTGGTTTCTAATTTTGTGTCAGTTCTACAATGCTTCAAATACTATCATGTTTGA TGACCTTCGAAGAAATTTCGTGATGAACCCACAGAATGGTTTGACAATTAGGCCATTCAGGAAGGCTCATGCCAACCGAG ATAGTGATCAGGAACTAGTGAAACTTACCCAGTACTTACTGGCCATTGCAGAGCTTGATGACTTGAGCAAGCTTAACCAT CATAACTGGGAGTCATTTACAGATGAAAATGCTAAAAGGCGTAGGCACAGATAAGTGATAATGGACTTCAATAAGAGGAA TCTGGTATGGAAGATCAGCTTCTATAAGAGACTTTGCTTAGCCGGAGGTTTTCAATTTTTCATTTCAAGTCAGGACGGAG TGAATGACAGAGAAAATGACTCCCTGTGGCAGCTGTGTGGAGCTATCTAAGATGACCAATAATTATTGTGCAATTATTAT GCACTGGTTCCTGGAGACTAGTAATTCTTATGCTTGAGAAAATTATGTGTTTTCATGACTTGTTGAGAAATGAGTACAAA ACTCGGATCAAACCGGTTTTTGTGGTTACTTTCCGAATTTACAGTTGCCAATGAGAAATGACTGGTTGTGACAACTGTAA CTGATATCCAAAGTGTTACAGATTCTAATTCTCGACAATGTATAATTTAAGGTCAATCGTAGTGGTTTTAGTCTGACTCT TATCATTCTTGTTTTTATGCTTCCTGATTTTTGTTGTCAGAAAACCATGTTTGCTTTTGTTTGTAATCCTCTTCTAAATA TAAGAAATTGTAGACGTGAGGGAGAAATGAAAGGATATTAGTGAGAATATCATTTGTTGAGATGAAAAAGGGGTAAAAGG GAAACCGAGAACTATTTTCTTATTTTGAAAGTAAAATATGATATACGTGTAATTGATGCAAGGAACAATAGTAGTGGAAA TTTGAAAGTCAAGAAGCAAGATGATGACATTAATCAATGAGGGAAAATAATCTGCCAACCGTAAAGTCTACAATTGGAGA CACTCTCATAAGTCATAACCATCAACTCACTGCATTTCATACTGATTCTTAAC
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0387500.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTTCTTCATCTTCAGTGCCATTGCCACCGTCATCGGAGGAGGAGATGACACTCAAGGTCAAATGGGCCGGCAAGGA TTACACCGTCCGAGTCTGCGGCGACGACACCGTCGGCGAACTCAAGCGTCGAATCTGCGAGCTAACCAACGTTTTACCCA TTCGCCAGAAGCTCCTGTACCCTAAACTCGGTTCTAAACTCAACGATGACACACTCTTACTCTCTCAACTCTCCCTCAAT TCCGCACTCAAGTTCACCATGATCGGGACTACTGAAGAAGATTTGATTGTGGATCCAGTGGAGGCTCCTGAGATTATTGA TGATCTTGAGCTTCCTCAAGAAGAAGCTATTGACATCAAAGACATGGAAGTCAACAAGCACAAGTTGACTAGGCGCATTA ATCAGTTCAAGGTTGAGCTTCTAAACCCGTGTCGAGAAGGAAAGAAACTCCTTGTTCTGGATATTGATTACACCCTTTTC GATCACCGGTCCACTGCTGAGAACCCTCTTCAACTTATGAGACCTTACCTTCATGAGTTTCTTGCATCAGTTTATTCCGA GTATGACATTATGATATGGTCTGCGACCAGCATGAAATGGATTAACCTTAAGATGGGACAACTTGGGGTTCTGGATAATC CTAACTACAAGATCACAGCGCTTCTTGACCACTTAGCAATGATCACTGTTCAGACGCCTTCTCGTGGGGTCTTTGACTGC AAGCCACTTGGTTTGATCTGGGCTAAGTTCCCTGAGTTCTACAATGCTTCAAATACTATCATGTTTGATGACCTTCGAAG AAATTTCGTGATGAACCCACAGAATGGTTTGACAATTAGGCCATTCAGGAAGGCTCATGCCAACCGAGATAGTGATCAGG AACTAGTGAAACTTACCCAGTACTTACTGGCCATTGCAGAGCTTGATGACTTGAGCAAGCTTAACCATCATAACTGGGAG TCATTTACAGATGAAAATGCTAAAAGGCGTAGGCACAGATAA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0387500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MASSSSVPLPPSSEEEMTLKVKWAGKDYTVRVCGDDTVGELKRRICELTNVLPIRQKLLYPKLGSKLNDDTLLLSQLSLN SALKFTMIGTTEEDLIVDPVEAPEIIDDLELPQEEAIDIKDMEVNKHKLTRRINQFKVELLNPCREGKKLLVLDIDYTLF DHRSTAENPLQLMRPYLHEFLASVYSEYDIMIWSATSMKWINLKMGQLGVLDNPNYKITALLDHLAMITVQTPSRGVFDC KPLGLIWAKFPEFYNASNTIMFDDLRRNFVMNPQNGLTIRPFRKAHANRDSDQELVKLTQYLLAIAELDDLSKLNHHNWE SFTDENAKRRRHR
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.10.20.90
11 94 84 1.0E-21 –
PANTHER
PTHR32054:SF0
11 330 320 5.6E-143 –
PANTHER
PTHR32054
11 330 320 5.6E-143 –
SUPERFAMILY
SSF54236
12 108 97 2.76E-17
IPR029071
ProSiteProfiles
PS50053
15 81 67 10.876
IPR000626
CDD
cd01813
17 90 74 5.03651E-24 –
SMART
SM00213
17 90 74 1.6E-10
IPR000626
Pfam
PF00240
19 60 42 9.9E-7
IPR000626
Gene3D
G3DSA:3.40.50.1000
100 328 229 8.6E-71
IPR023214
Coils
Coil
119 139 21 - –
TIGRFAM
TIGR02245
128 322 195 4.2E-106
IPR011943
SUPERFAMILY
SSF56784
138 316 179 1.87E-28
IPR036412
ProSiteProfiles
PS50969
144 305 162 23.015
IPR004274
SMART
SM00577
147 289 143 7.0E-16
IPR004274
Pfam
PF03031
149 311 163 2.3E-27
IPR004274

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004721
Molecular function Phosphoprotein phosphatase activity Catalysis of the reaction: a phosphoprotein + H2O = a protein + phosphate. Together with protein kinases, these enzymes control the state of phosphorylation of cell proteins and thereby provide an important mechanism for regulating cellular activity.
Subterm of
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of
GO:0005634
Cellular component Nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0387500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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