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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0405800 |
| Transcript ID | LotjaGi4g1v0405800.1 |
| Related isoforms 6 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 26S proteasome non-ATPase regulatory subunit; TAIR: AT5G09900.2 26S proteasome regulatory subunit, putative (RPN5); Swiss-Prot: sp|Q9FIB6|PS12A_ARATH 26S proteasome non-ATPase regulatory subunit 12 homolog A; TrEMBL-Plants: tr|V7CNL2|V7CNL2_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0405800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:78210282..78216708) extracted from Lotus japonicus Gifu genome v1.2.
TGGATCGCAAGCTGGCAGCACAAAAAGAACGTGTATTTACTGTCTTCACCCTTCTCTTCTCCACTCTCACACTTTTCCTT CCCTTTTCAATTTTCAATAGCTAGCGACTCGACTCGATCTCTCGCCCGCAACTCAACCATGGTATCTTCTTCTCGATCGA TTCAATTCCAGATCTCACTCTGTTCTACTTCGTTTTCGTTAATTTCACTGTCAATTCTGCATAACAATTGCTTCGTTTTG TTTATACTATTAGCATCTAGTTAGGGTTGTTAATTTTGTGTCTTCTCTGAACTGAAATTTCACGATTCCGGTCACCGGAA CTGATTATTCTACTGAAATCCTTTGCAGGCGAATTTAGATTCGGCGATAGAGCAATTGCTGAATGTGGAGAAGCAGATGA GGCTCGCCGGTGACGTTTCCGGCACCAGGAAAGCCGCCACCGACATTCTGAAGCTCTGCTTTGATGCGCGAGCCTGGAAA ACCCTAAACGACCAGATTGTCGTTTTGTCCAAACGTCGTGGTCAGCTTAAGCAGGTAACTCCATTGAAGAACCTATTAGT TTTACTTGAATCGCTTCTGTGTGCATAACGAGGTTGGGGTTTTAGTTCACTGGTTAAAAAATTGGGCGTTCTTTGTTCGT TTGGATTGGAAATTTGATTCATGATTATTTACATATGCATAGTAATTTCCTGTTAATGATTGGTAGAAATTTTGCTTAGA AAACCATGGGCATTGTGCTTGATTTGCGGTAACGAGTTAGAAAATGTATAGTTTCTTTATTTGAAATATCCTCACTGGTT TTGATTTCACTATTTCTGAATAGTATGTGAGGACTTTTAGAATGTTACTCCTCTTTGCGTAGAGTTACATGGGATGAGGC TATAGATTCTTCAGTTCGTATATTATTATCTAGTTGCCTCGTAAATGGTAAGAGAAAGTGTGAAACATAGTATCATCTGG TATTAACGAGCCTATTATATGCTCACAGGCTGTAACAGCAATGGTCCAGCAGGCTATGCAATATATTGATGAGACACCGG ACGTTGAAACTCGTGTAGAACTCATCAAAACATTGAACAGTGTATCTGCCGGGAAGGTGAGCTGTTGTGATGTCTGAAGT CTCTGCCCTGTTTTATAATCCTTCAGGGCTGTATATTTGTCTCATATGACGTATGTTTTATATGGTGTTTTCTATGTTAG ATATATGTTGAGATTGAGAGGGCTAGGTTGATCAAGAAACTTGCAAAGATTAAGGAAGAACAAGGGCTTATAGCTGAAGC AGCTGATTTGATGCAAGAAATTGCGGTCAGTGCGCACGCGTCGTATTTTGATGGCTTTTATACTTTTGGTTTTTGGATTT GACAGTTTGTACAAGTTGCTTTCAGTTGACTTAAGTTGGGTGATCTTAACAGGTGGAAACTTTTGGTGCCATGGCAAAAA CTGAAAAGATTGCATTCATCCTTGAACAAGTATGAGTCATTTTTCTCTTTGTTTCAGTTGTAACTGATAGAGATGGTAGA CATTAATTTCTTCTGATGCAATTCAGTTGCTGATACGATAATAACTTCAAATTGTGTAGGTTCGTTTGTGCCTAGACCGA CAGGATTATGTCCGGGCACAAATACTCTCAAAAAAGATTAGTCCAAGAGTGTTTGCTGTTGATGCATCTAAGGAAAAGAA AAAGCCTAAAGATGGCGACAATCTTGTTGAAGAGGCTCCGGCAGATATACCATCTCTGCTAGAGTTGAAGCGGATCTATT ATGAACTAATGATTCGGTAACTAATTCCTGCTTCTCGTTTTAATTGTATTTCTTACTCTATCATAATGTGGCTTACCCTT GTTTATCTGTTACCTCCTTCAATTTATTTGGTATAATAAACTGAGTGTCTAACAGATGCTCAAAATGATTCTAGTCTTGG GGCTTTCCTGTTTCAGTAACATTGAGGATATGTTTTGTTGCTAGCCTAATTATGAAAACCAAACAATGTTTGCAACTGGG TTCACCAGTACCCACACTTGAGAGATGCACAAGAAGACATAATGCTAATGACTGTCTACCTGCAATACGTTCTAAAATGT GTTCATTGTCTATTAATCTCTCTTCTTTGCATTTGTTGAAGTTTTCTTCATCAATCATTTTAGTAATATAAGTGCAATTT TCCAAGTATTTACTTTTAGTTCTTTAATTGGATTGGTGGTCCATAAGGAAAACTAATTTGTTGAAGGGTTGAATTGGCCT TGTCACTGAGTTTAAAACGTGAATAGAAGAGAGTGGATATGTACTAATCTGCTATGCATTGATGGATAGGTAGATTTGAT TATAACAAATATAAGTACTGATTTGCTTATATTTCTATGTGGTATATATTATGATACCCCTCTTTATAACACTTCCATAT CATTGTGAAGAGTCTAGAGGCAAGCATGTGATTTGCAATTAGATGAAATGTGAAATGTTCAAATCCTACCACTGTTGAAT TGAAAAGCTTGGGCCTAGGCTTGAAGGATTTTCCCTAGGAACACTTTAGTCTCGGTATTCATGCCTCATCTTTCACCAAA CCAGCGAGGCGGACCAGTCAAGTTTCCTGCAAGCTGGTCTGAAAAAGATTTGACATGATATCAAATGAATATATGGATAA GGATGTGTATTATAGTTGGAGTATTAATGCATTGTCAGTGTAAAACAGTTGTCTGACATCCAATCATGCTATGCCATGTA GGACCACATTATAGGAGCAGTTATCTTTCTATTTATATAAATTAAAATAACAAATTATTTACTGTTTTGGGACTTTAAAT CCTTAAAGTTGTTAATTTATTTAAAATGTGATATCTAACTGTCAATTATTAACTGGTAACCTCTTTTTGGTTCAGGTCAA ATACATCCTATTCTCTTACATACATTTTACATCTTAATCACCTATTTTCTTTCCAATTAAACTGATATTATGTTTTGTGT GTGTTCCCTTGCTTTATATTCTTTAACTAATTGACATCCCATTTCTTTACAATCATGAAATTAATCATTATGTTCTGCAC AGTTTATAGTTCAAACATTTTGACATGATGCGAACTTTGATTGCCTCTTGGAATCGTATGAAATATGAATGCTAAAATCA CATGAACTAGCTTGCAGTTTTTAGTTATCCTTCCTGAATTGTAGATTCTTGTGTTTTTTCAACTGCAAAGTCAAGACCTT TTTTTTTCTTTGCTAGTTCTGTAACTCCCATCTAGGTTCACACTATTGCATACCATGTACAGTGCTTATTCATCAATTGT CATTCATGCTGCCTTTGTAGCTGGGTCCTACTTTCCTTGGTCATTTCAATTGTATGTATTTGATATTTTTCTGTGTGTTT ATGGGGATTGGTTTGTGATATGTGACTATAATAAAATGTAGTAAAACTTCATAATGGAGTCAAATATATTATGCACTGCT TTTCAAATTTGGTGCTATGCTTATTTACCACTTTCACAAATGGGGATTGATGTAGTCGAGTGCTTGTTTATTTTTACCTT CATGCTATATGTTTTTCAAATACCTAATTGCTGCTAATCTTAAAATATTCATTGTCTAATGCTAATTTTTGTTTTTTTTT GGAAGGTATTATTCCCATAACAATGATTATCTTGAAATTTGCCGTTGCTATAAGTCAATATATGAGATTCCATCTGTCAG AGAAAACCCTGCCGAGTGGATCCCAGTATGCTTTCTCTGTCTTTATTTGCACTTTCTGTTACTGCTAGGTTCTATTGTTC TATGATATAGTGTTTTTCTAAAAATTATCTTTACTTATAGATCCTGAGGAAAATATGTTGGTACTTGGTTCTATCGCCAC ATGATCCAATGCAATCAAGCCTCCTTAATTCCACCTTGGAGGATAAGAATCTATCTGAGATTCCAAACTTCAAGTATGTT AATCCTATTTATATCTGATGTTTTCTTGGTGATGTTCAAGTATTTTGTTTGTAATTTCTTTTTTACTCGGTGTACCTGTT ATATTCTGTGCTTAGGCTACTTTTGAAACAACTGGTCACAATGGAGGTCATCCAATGGACTACTCTTTGGGATACATATA AGAGTGAGTTTGAGAACGAGAAGGTCTCTGGGAAATCTTTGGATGAAAAAGCAGCCGAAGATTTAAAGCAAAGAATAATT GAACATGTAATTGACTGATGTCTTTATATTTCTTTGTTCTCCTGACATCAATTTGGTTGTATTGTGGGATATGCTTTTAT GTTGCACACTTCTTTATGTGAGTATTTATAAGCATTATTTTTGTTTCTTTTCAGAATATTCTTGTCGTATCAAAATACTA CGCCAGGATTACAGTGAAGAGACTTGCCCAGCTTTTGTGTCTTAGTGTACAGGTTTGTAAAGCTAGTTGTGATATATGCT TTTTTGAAGTGCTTGTGTGGTAACTTTTAAATGGCTCATGGGCATATCCCCTAGTATCTGTCACTGGAGACTAGTGTTTC AAATAAAAAATCTAGTTGGGGAGTTGTAGTTGACAGCGTATGTCTATGCTGTTGTGCTGCAGCAGTTCACTTGCCTCCTC CCATGGTTTATTTTGTGGGTTATCATTGTGGATGTTGTAACTAAATTTATTTTACTTTGCTTCTTAAAATCATCTTAGTG ATAATCCCAACTAATTCTCCATATCTCCTTACAAAATTCAGGAAGCTGAGAAGCATCTATCAGATATGGTTGTGTCGAAG GCACTGATAGCAAAGATTGATAGGCCAAAGGGAATAGTGTGTTTCCAAACAGCGAAGGATAGCAATGATATTCTTAACTC ATGGGCAGCAAACTTGGAGAAATTGCTTGATCTTGTGGAGAAAAGTTGTCATCAAATACACAAGGAAACCATGGTCCATA AAGCTGTCTTAAAGGTTTAAGGTCCATGTCAGCAATTACAGTCATAGGTATAACTTTTATACTTTTCCTCTTGCATTTTT CTCAATTTTTCGTTAAAGAGAGAGAGTTGGAGAAGCGAAGGGAAATCTGATTATGGGAAATGTTAGAATCATGGCTGTTA AATCTGAAGCGTTTCCTATTTTATCATAATGCTTCTTTCTGGTTATTGCAGGGGCATTTCGATATAGATGTTATTTTGGA CCTGAAGTTGCTTTATTAGGAATGTTCATTCGAATTGTCACCGACTGGGTTGGTGAAGGAATTGCATCAAACGACGGTCC CGTTTTCATTTTATATTTTGCCATTCATGCGAGCTGGATATATATGCTTTTCTTAGAACTGAAAGTAGCCATGTTGTATA CTACTGGTAGATACCTCACCACTGATTTATAACAGGATCCTAAATGGTCTTGTTTGTTGCAGTGGTAAGAAATTCAGTGC GTGTTCATTTTATATTCTTTGGTATGGTTAAATTTCTCTTGTACTTTTGATTACTATTTCCTTTTCCTGCGCAAATTGGA TGTCTCTTGTAGAAGCATCTATTTTGGGTACATGAATTTGAAGAATCTAGCTTTGTTGGATGGATGATTTAGAAAGGAAA AGGAGGGGGAAGAGTAATTTTTCATTTCAATTAACATTCTTATTTGAGAAATGGTTAAGTGATCTTAATAATTGTCATGC TTGATTTTCTCTATTCAGAAATGAAAAATTCCCCCTCCTATTCGTACCCTGATACTGTAGGAGATTTTTCCCGTTTATGT TCAATTTTGTCATAGGTTTGATACTCCTGGTTCCGATGTTGCATGTTAACTATTTTGCAAGGCAGTGATTGGTAAATGGA ATATCGCTGGGATTATAGACTTTACTGAATATTTTTATGGAAAAAGTTTGAAATAAATTTGTGAGCGAAGATGTTAACAT GATTAGTTTGAGTTGATGTCTTTATACAGATGGCAAACTCTTGATTCAAGCCGAATATTCTAGTCACGAGCCATGTCTAA ATTGGAACTCTTTTTCAAACTGGGTCCAAAATACATCAATGGGATAGTATATAGAAGACCCGCGAAATGCATTAAGTTAC AAACGAGTTCAGGATATATGGAGGAAGTGGGCAAAAAGTAATATTAAGCAAGTAAAGTGAATGGCACACTTAGTCATCTC ATCTCTACTTCGTTCACGTCTTTTATGTGAGAATGTTTGACTTTGAAAGGAGATTTTATTTGCACACGATGATGTATGAC TAAAATAACATAGTTCAAACTCACTTTTATTTGGGGCTGACAGCACTTCCAAGTTCTAAAATGGCGCTGACTTAAGTCAA GTTGGATAGGGGTCTTATAGGATCCAACTAGAGGTCTTTAAGAAAATGACCTTTACAAAGGTGTTATTCACTAATGTGAA CCTTTACCATGCGACTTTAAGATTCCTTTAATATATAATATCATTTTAGTGTCCTTGAAGAAATGAAGAAAGTTTTGTTC TGTTCTCCTAATCAAATTATTTTGGAT
CDS sequence (LotjaGi4g1v0405800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGAATTTAGATTCGGCGATAGAGCAATTGCTGAATGTGGAGAAGCAGATGAGGCTCGCCGGTGACGTTTCCGGCAC CAGGAAAGCCGCCACCGACATTCTGAAGCTCTGCTTTGATGCGCGAGCCTGGAAAACCCTAAACGACCAGATTGTCGTTT TGTCCAAACGTCGTGGTCAGCTTAAGCAGGCTGTAACAGCAATGGTCCAGCAGGCTATGCAATATATTGATGAGACACCG GACGTTGAAACTCGTGTAGAACTCATCAAAACATTGAACAGTGTATCTGCCGGGAAGATATATGTTGAGATTGAGAGGGC TAGGTTGATCAAGAAACTTGCAAAGATTAAGGAAGAACAAGGGCTTATAGCTGAAGCAGCTGATTTGATGCAAGAAATTG CGGTGGAAACTTTTGGTGCCATGGCAAAAACTGAAAAGATTGCATTCATCCTTGAACAAGTTCGTTTGTGCCTAGACCGA CAGGATTATGTCCGGGCACAAATACTCTCAAAAAAGATTAGTCCAAGAGTGTTTGCTGTTGATGCATCTAAGGAAAAGAA AAAGCCTAAAGATGGCGACAATCTTGTTGAAGAGGCTCCGGCAGATATACCATCTCTGCTAGAGTTGAAGCGGATCTATT ATGAACTAATGATTCGGTATTATTCCCATAACAATGATTATCTTGAAATTTGCCGTTGCTATAAGTCAATATATGAGATT CCATCTGTCAGAGAAAACCCTGCCGAGTGGATCCCAATCCTGAGGAAAATATGTTGGTACTTGGTTCTATCGCCACATGA TCCAATGCAATCAAGCCTCCTTAATTCCACCTTGGAGGATAAGAATCTATCTGAGATTCCAAACTTCAAGCTACTTTTGA AACAACTGGTCACAATGGAGGTCATCCAATGGACTACTCTTTGGGATACATATAAGAGTGAGTTTGAGAACGAGAAGGTC TCTGGGAAATCTTTGGATGAAAAAGCAGCCGAAGATTTAAAGCAAAGAATAATTGAACATAATATTCTTGTCGTATCAAA ATACTACGCCAGGATTACAGTGAAGAGACTTGCCCAGCTTTTGTGTCTTAGTGTACAGGAAGCTGAGAAGCATCTATCAG ATATGGTTGTGTCGAAGGCACTGATAGCAAAGATTGATAGGCCAAAGGGAATAGTGTGTTTCCAAACAGCGAAGGATAGC AATGATATTCTTAACTCATGGGCAGCAAACTTGGAGAAATTGCTTGATCTTGTGGAGAAAAGTTGTCATCAAATACACAA GGAAACCATGGTCCATAAAGCTGTCTTAAAGGTTTAA
Protein sequence (LotjaGi4g1v0405800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MANLDSAIEQLLNVEKQMRLAGDVSGTRKAATDILKLCFDARAWKTLNDQIVVLSKRRGQLKQAVTAMVQQAMQYIDETP DVETRVELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEIAVETFGAMAKTEKIAFILEQVRLCLDR QDYVRAQILSKKISPRVFAVDASKEKKKPKDGDNLVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKSIYEI PSVRENPAEWIPILRKICWYLVLSPHDPMQSSLLNSTLEDKNLSEIPNFKLLLKQLVTMEVIQWTTLWDTYKSEFENEKV SGKSLDEKAAEDLKQRIIEHNILVVSKYYARITVKRLAQLLCLSVQEAEKHLSDMVVSKALIAKIDRPKGIVCFQTAKDS NDILNSWAANLEKLLDLVEKSCHQIHKETMVHKAVLKV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 438 | 437 | 2.3E-245 | – | |
| PANTHER | 2 | 438 | 437 | 2.3E-245 | ||
| ProSiteProfiles | 229 | 399 | 171 | 21.056 | ||
| Pfam | 287 | 395 | 109 | 3.3E-20 | ||
| Gene3D | 323 | 403 | 81 | 3.8E-21 | ||
| SMART | 328 | 414 | 87 | 7.3E-16 | – | |
| SMART | 328 | 414 | 87 | 7.3E-16 | ||
| SUPERFAMILY | 328 | 404 | 77 | 2.72E-19 | ||
| Pfam | 401 | 433 | 33 | 1.1E-14 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0405800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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