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LotjaGi4g1v0405800.3

Overview

Field Value
Gene ID LotjaGi4g1v0405800
Transcript ID LotjaGi4g1v0405800.3
Related isoforms 6
Lotus japonicus genome version Gifu v1.2
Description 26S proteasome non-ATPase regulatory subunit; TAIR: AT5G09900.2 26S proteasome regulatory subunit, putative (RPN5); Swiss-Prot: sp|Q9FIB6|PS12A_ARATH 26S proteasome non-ATPase regulatory subunit 12 homolog A; TrEMBL-Plants: tr|I1K4U3|I1K4U3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0405800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:78210349..78215181) extracted from Lotus japonicus Gifu genome v1.2.

CACACTTTTCCTTCCCTTTTCAATTTTCAATAGCTAGCGACTCGACTCGATCTCTCGCCCGCAACTCAACCATGGTATCT TCTTCTCGATCGATTCAATTCCAGATCTCACTCTGTTCTACTTCGTTTTCGTTAATTTCACTGTCAATTCTGCATAACAA TTGCTTCGTTTTGTTTATACTATTAGCATCTAGTTAGGGTTGTTAATTTTGTGTCTTCTCTGAACTGAAATTTCACGATT CCGGTCACCGGAACTGATTATTCTACTGAAATCCTTTGCAGGCGAATTTAGATTCGGCGATAGAGCAATTGCTGAATGTG GAGAAGCAGATGAGGCTCGCCGGTGACGTTTCCGGCACCAGGAAAGCCGCCACCGACATTCTGAAGCTCTGCTTTGATGC GCGAGCCTGGAAAACCCTAAACGACCAGATTGTCGTTTTGTCCAAACGTCGTGGTCAGCTTAAGCAGGTAACTCCATTGA AGAACCTATTAGTTTTACTTGAATCGCTTCTGTGTGCATAACGAGGTTGGGGTTTTAGTTCACTGGTTAAAAAATTGGGC GTTCTTTGTTCGTTTGGATTGGAAATTTGATTCATGATTATTTACATATGCATAGTAATTTCCTGTTAATGATTGGTAGA AATTTTGCTTAGAAAACCATGGGCATTGTGCTTGATTTGCGGTAACGAGTTAGAAAATGTATAGTTTCTTTATTTGAAAT ATCCTCACTGGTTTTGATTTCACTATTTCTGAATAGTATGTGAGGACTTTTAGAATGTTACTCCTCTTTGCGTAGAGTTA CATGGGATGAGGCTATAGATTCTTCAGTTCGTATATTATTATCTAGTTGCCTCGTAAATGGTAAGAGAAAGTGTGAAACA TAGTATCATCTGGTATTAACGAGCCTATTATATGCTCACAGGCTGTAACAGCAATGGTCCAGCAGGCTATGCAATATATT GATGAGACACCGGACGTTGAAACTCGTGTAGAACTCATCAAAACATTGAACAGTGTATCTGCCGGGAAGGTGAGCTGTTG TGATGTCTGAAGTCTCTGCCCTGTTTTATAATCCTTCAGGGCTGTATATTTGTCTCATATGACGTATGTTTTATATGGTG TTTTCTATGTTAGATATATGTTGAGATTGAGAGGGCTAGGTTGATCAAGAAACTTGCAAAGATTAAGGAAGAACAAGGGC TTATAGCTGAAGCAGCTGATTTGATGCAAGAAATTGCGGTCAGTGCGCACGCGTCGTATTTTGATGGCTTTTATACTTTT GGTTTTTGGATTTGACAGTTTGTACAAGTTGCTTTCAGTTGACTTAAGTTGGGTGATCTTAACAGGTGGAAACTTTTGGT GCCATGGCAAAAACTGAAAAGATTGCATTCATCCTTGAACAAGTATGAGTCATTTTTCTCTTTGTTTCAGTTGTAACTGA TAGAGATGGTAGACATTAATTTCTTCTGATGCAATTCAGTTGCTGATACGATAATAACTTCAAATTGTGTAGGTTCGTTT GTGCCTAGACCGACAGGATTATGTCCGGGCACAAATACTCTCAAAAAAGATTAGTCCAAGAGTGTTTGCTGTTGATGCAT CTAAGGAAAAGAAAAAGCCTAAAGATGGCGACAATCTTGTTGAAGAGGCTCCGGCAGATATACCATCTCTGCTAGAGTTG AAGCGGATCTATTATGAACTAATGATTCGGTAACTAATTCCTGCTTCTCGTTTTAATTGTATTTCTTACTCTATCATAAT GTGGCTTACCCTTGTTTATCTGTTACCTCCTTCAATTTATTTGGTATAATAAACTGAGTGTCTAACAGATGCTCAAAATG ATTCTAGTCTTGGGGCTTTCCTGTTTCAGTAACATTGAGGATATGTTTTGTTGCTAGCCTAATTATGAAAACCAAACAAT GTTTGCAACTGGGTTCACCAGTACCCACACTTGAGAGATGCACAAGAAGACATAATGCTAATGACTGTCTACCTGCAATA CGTTCTAAAATGTGTTCATTGTCTATTAATCTCTCTTCTTTGCATTTGTTGAAGTTTTCTTCATCAATCATTTTAGTAAT ATAAGTGCAATTTTCCAAGTATTTACTTTTAGTTCTTTAATTGGATTGGTGGTCCATAAGGAAAACTAATTTGTTGAAGG GTTGAATTGGCCTTGTCACTGAGTTTAAAACGTGAATAGAAGAGAGTGGATATGTACTAATCTGCTATGCATTGATGGAT AGGTAGATTTGATTATAACAAATATAAGTACTGATTTGCTTATATTTCTATGTGGTATATATTATGATACCCCTCTTTAT AACACTTCCATATCATTGTGAAGAGTCTAGAGGCAAGCATGTGATTTGCAATTAGATGAAATGTGAAATGTTCAAATCCT ACCACTGTTGAATTGAAAAGCTTGGGCCTAGGCTTGAAGGATTTTCCCTAGGAACACTTTAGTCTCGGTATTCATGCCTC ATCTTTCACCAAACCAGCGAGGCGGACCAGTCAAGTTTCCTGCAAGCTGGTCTGAAAAAGATTTGACATGATATCAAATG AATATATGGATAAGGATGTGTATTATAGTTGGAGTATTAATGCATTGTCAGTGTAAAACAGTTGTCTGACATCCAATCAT GCTATGCCATGTAGGACCACATTATAGGAGCAGTTATCTTTCTATTTATATAAATTAAAATAACAAATTATTTACTGTTT TGGGACTTTAAATCCTTAAAGTTGTTAATTTATTTAAAATGTGATATCTAACTGTCAATTATTAACTGGTAACCTCTTTT TGGTTCAGGTCAAATACATCCTATTCTCTTACATACATTTTACATCTTAATCACCTATTTTCTTTCCAATTAAACTGATA TTATGTTTTGTGTGTGTTCCCTTGCTTTATATTCTTTAACTAATTGACATCCCATTTCTTTACAATCATGAAATTAATCA TTATGTTCTGCACAGTTTATAGTTCAAACATTTTGACATGATGCGAACTTTGATTGCCTCTTGGAATCGTATGAAATATG AATGCTAAAATCACATGAACTAGCTTGCAGTTTTTAGTTATCCTTCCTGAATTGTAGATTCTTGTGTTTTTTCAACTGCA AAGTCAAGACCTTTTTTTTTCTTTGCTAGTTCTGTAACTCCCATCTAGGTTCACACTATTGCATACCATGTACAGTGCTT ATTCATCAATTGTCATTCATGCTGCCTTTGTAGCTGGGTCCTACTTTCCTTGGTCATTTCAATTGTATGTATTTGATATT TTTCTGTGTGTTTATGGGGATTGGTTTGTGATATGTGACTATAATAAAATGTAGTAAAACTTCATAATGGAGTCAAATAT ATTATGCACTGCTTTTCAAATTTGGTGCTATGCTTATTTACCACTTTCACAAATGGGGATTGATGTAGTCGAGTGCTTGT TTATTTTTACCTTCATGCTATATGTTTTTCAAATACCTAATTGCTGCTAATCTTAAAATATTCATTGTCTAATGCTAATT TTTGTTTTTTTTTGGAAGGTATTATTCCCATAACAATGATTATCTTGAAATTTGCCGTTGCTATAAGTCAATATATGAGA TTCCATCTGTCAGAGAAAACCCTGCCGAGTGGATCCCAGTATGCTTTCTCTGTCTTTATTTGCACTTTCTGTTACTGCTA GGTTCTATTGTTCTATGATATAGTGTTTTTCTAAAAATTATCTTTACTTATAGATCCTGAGGAAAATATGTTGGTACTTG GTTCTATCGCCACATGATCCAATGCAATCAAGCCTCCTTAATTCCACCTTGGAGGATAAGAATCTATCTGAGATTCCAAA CTTCAAGTATGTTAATCCTATTTATATCTGATGTTTTCTTGGTGATGTTCAAGTATTTTGTTTGTAATTTCTTTTTTACT CGGTGTACCTGTTATATTCTGTGCTTAGGCTACTTTTGAAACAACTGGTCACAATGGAGGTCATCCAATGGACTACTCTT TGGGATACATATAAGAGTGAGTTTGAGAACGAGAAGGTCTCTGGGAAATCTTTGGATGAAAAAGCAGCCGAAGATTTAAA GCAAAGAATAATTGAACATGTAATTGACTGATGTCTTTATATTTCTTTGTTCTCCTGACATCAATTTGGTTGTATTGTGG GATATGCTTTTATGTTGCACACTTCTTTATGTGAGTATTTATAAGCATTATTTTTGTTTCTTTTCAGAATATTCTTGTCG TATCAAAATACTACGCCAGGATTACAGTGAAGAGACTTGCCCAGCTTTTGTGTCTTAGTGTACAGGTTTGTAAAGCTAGT TGTGATATATGCTTTTTTGAAGTGCTTGTGTGGTAACTTTTAAATGGCTCATGGGCATATCCCCTAGTATCTGTCACTGG AGACTAGTGTTTCAAATAAAAAATCTAGTTGGGGAGTTGTAGTTGACAGCGTATGTCTATGCTGTTGTGCTGCAGCAGTT CACTTGCCTCCTCCCATGGTTTATTTTGTGGGTTATCATTGTGGATGTTGTAACTAAATTTATTTTACTTTGCTTCTTAA AATCATCTTAGTGATAATCCCAACTAATTCTCCATATCTCCTTACAAAATTCAGGAAGCTGAGAAGCATCTATCAGATAT GGTTGTGTCGAAGGCACTGATAGCAAAGATTGATAGGCCAAAGGGAATAGTGTGTTTCCAAACAGCGAAGGATAGCAATG ATATTCTTAACTCATGGGCAGCAAACTTGGAGAAATTGCTTGATCTTGTGGAGAAAAGTTGTCATCAAATACACAAGGAA ACCATGGTCCATAAAGCTGTCTTAAAGGTTTAA
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0405800.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAGGCTCGCCGGTGACGTTTCCGGCACCAGGAAAGCCGCCACCGACATTCTGAAGCTCTGCTTTGATGCGCGAGCCTG GAAAACCCTAAACGACCAGATTGTCGTTTTGTCCAAACGTCGTGGTCAGCTTAAGCAGGCTGTAACAGCAATGGTCCAGC AGGCTATGCAATATATTGATGAGACACCGGACGTTGAAACTCGTGTAGAACTCATCAAAACATTGAACAGTGTATCTGCC GGGAAGATATATGTTGAGATTGAGAGGGCTAGGTTGATCAAGAAACTTGCAAAGATTAAGGAAGAACAAGGGCTTATAGC TGAAGCAGCTGATTTGATGCAAGAAATTGCGGTGGAAACTTTTGGTGCCATGGCAAAAACTGAAAAGATTGCATTCATCC TTGAACAAGTTCGTTTGTGCCTAGACCGACAGGATTATGTCCGGGCACAAATACTCTCAAAAAAGATTAGTCCAAGAGTG TTTGCTGTTGATGCATCTAAGGAAAAGAAAAAGCCTAAAGATGGCGACAATCTTGTTGAAGAGGCTCCGGCAGATATACC ATCTCTGCTAGAGTTGAAGCGGATCTATTATGAACTAATGATTCGGTATTATTCCCATAACAATGATTATCTTGAAATTT GCCGTTGCTATAAGTCAATATATGAGATTCCATCTGTCAGAGAAAACCCTGCCGAGTGGATCCCAATCCTGAGGAAAATA TGTTGGTACTTGGTTCTATCGCCACATGATCCAATGCAATCAAGCCTCCTTAATTCCACCTTGGAGGATAAGAATCTATC TGAGATTCCAAACTTCAAGCTACTTTTGAAACAACTGGTCACAATGGAGGTCATCCAATGGACTACTCTTTGGGATACAT ATAAGAGTGAGTTTGAGAACGAGAAGGTCTCTGGGAAATCTTTGGATGAAAAAGCAGCCGAAGATTTAAAGCAAAGAATA ATTGAACATAATATTCTTGTCGTATCAAAATACTACGCCAGGATTACAGTGAAGAGACTTGCCCAGCTTTTGTGTCTTAG TGTACAGGAAGCTGAGAAGCATCTATCAGATATGGTTGTGTCGAAGGCACTGATAGCAAAGATTGATAGGCCAAAGGGAA TAGTGTGTTTCCAAACAGCGAAGGATAGCAATGATATTCTTAACTCATGGGCAGCAAACTTGGAGAAATTGCTTGATCTT GTGGAGAAAAGTTGTCATCAAATACACAAGGAAACCATGGTCCATAAAGCTGTCTTAAAGGTTTAA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0405800.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MRLAGDVSGTRKAATDILKLCFDARAWKTLNDQIVVLSKRRGQLKQAVTAMVQQAMQYIDETPDVETRVELIKTLNSVSA GKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEIAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSKKISPRV FAVDASKEKKKPKDGDNLVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKSIYEIPSVRENPAEWIPILRKI CWYLVLSPHDPMQSSLLNSTLEDKNLSEIPNFKLLLKQLVTMEVIQWTTLWDTYKSEFENEKVSGKSLDEKAAEDLKQRI IEHNILVVSKYYARITVKRLAQLLCLSVQEAEKHLSDMVVSKALIAKIDRPKGIVCFQTAKDSNDILNSWAANLEKLLDL VEKSCHQIHKETMVHKAVLKV
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10855:SF3
1 421 421 2.4E-236 –
PANTHER
PTHR10855
1 421 421 2.4E-236
IPR040134
ProSiteProfiles
PS50250
212 382 171 21.056
IPR000717
Pfam
PF01399
270 378 109 3.1E-20
IPR000717
Gene3D
G3DSA:1.10.10.10
306 386 81 3.6E-21
IPR036388
SMART
SM00753
311 397 87 7.3E-16 –
SMART
SM00088
311 397 87 7.3E-16
IPR000717
SUPERFAMILY
SSF46785
311 387 77 2.58E-19
IPR036390
Pfam
PF18098
384 416 33 1.1E-14
IPR040896

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0405800.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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