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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0405800 |
| Transcript ID | LotjaGi4g1v0405800.5 |
| Related isoforms 6 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 26S proteasome non-ATPase regulatory subunit; TAIR: AT5G09900.2 26S proteasome regulatory subunit, putative (RPN5); Swiss-Prot: sp|Q9FIB6|PS12A_ARATH 26S proteasome non-ATPase regulatory subunit 12 homolog A; TrEMBL-Plants: tr|I1K4U3|I1K4U3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0405800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:78210605..78215181) extracted from Lotus japonicus Gifu genome v1.2.
ATTATTCTACTGAAATCCTTTGCAGGCGAATTTAGATTCGGCGATAGAGCAATTGCTGAATGTGGAGAAGCAGATGAGGC TCGCCGGTGACGTTTCCGGCACCAGGAAAGCCGCCACCGACATTCTGAAGCTCTGCTTTGATGCGCGAGCCTGGAAAACC CTAAACGACCAGATTGTCGTTTTGTCCAAACGTCGTGGTCAGCTTAAGCAGGTAACTCCATTGAAGAACCTATTAGTTTT ACTTGAATCGCTTCTGTGTGCATAACGAGGTTGGGGTTTTAGTTCACTGGTTAAAAAATTGGGCGTTCTTTGTTCGTTTG GATTGGAAATTTGATTCATGATTATTTACATATGCATAGTAATTTCCTGTTAATGATTGGTAGAAATTTTGCTTAGAAAA CCATGGGCATTGTGCTTGATTTGCGGTAACGAGTTAGAAAATGTATAGTTTCTTTATTTGAAATATCCTCACTGGTTTTG ATTTCACTATTTCTGAATAGTATGTGAGGACTTTTAGAATGTTACTCCTCTTTGCGTAGAGTTACATGGGATGAGGCTAT AGATTCTTCAGTTCGTATATTATTATCTAGTTGCCTCGTAAATGGTAAGAGAAAGTGTGAAACATAGTATCATCTGGTAT TAACGAGCCTATTATATGCTCACAGGCTGTAACAGCAATGGTCCAGCAGGCTATGCAATATATTGATGAGACACCGGACG TTGAAACTCGTGTAGAACTCATCAAAACATTGAACAGTGTATCTGCCGGGAAGGTGAGCTGTTGTGATGTCTGAAGTCTC TGCCCTGTTTTATAATCCTTCAGGGCTGTATATTTGTCTCATATGACGTATGTTTTATATGGTGTTTTCTATGTTAGATA TATGTTGAGATTGAGAGGGCTAGGTTGATCAAGAAACTTGCAAAGATTAAGGAAGAACAAGGGCTTATAGCTGAAGCAGC TGATTTGATGCAAGAAATTGCGGTCAGTGCGCACGCGTCGTATTTTGATGGCTTTTATACTTTTGGTTTTTGGATTTGAC AGTTTGTACAAGTTGCTTTCAGTTGACTTAAGTTGGGTGATCTTAACAGGTGGAAACTTTTGGTGCCATGGCAAAAACTG AAAAGATTGCATTCATCCTTGAACAAGTATGAGTCATTTTTCTCTTTGTTTCAGTTGTAACTGATAGAGATGGTAGACAT TAATTTCTTCTGATGCAATTCAGTTGCTGATACGATAATAACTTCAAATTGTGTAGGTTCGTTTGTGCCTAGACCGACAG GATTATGTCCGGGCACAAATACTCTCAAAAAAGATTAGTCCAAGAGTGTTTGCTGTTGATGCATCTAAGGAAAAGAAAAA GCCTAAAGATGGCGACAATCTTGTTGAAGAGGCTCCGGCAGATATACCATCTCTGCTAGAGTTGAAGCGGATCTATTATG AACTAATGATTCGGTAACTAATTCCTGCTTCTCGTTTTAATTGTATTTCTTACTCTATCATAATGTGGCTTACCCTTGTT TATCTGTTACCTCCTTCAATTTATTTGGTATAATAAACTGAGTGTCTAACAGATGCTCAAAATGATTCTAGTCTTGGGGC TTTCCTGTTTCAGTAACATTGAGGATATGTTTTGTTGCTAGCCTAATTATGAAAACCAAACAATGTTTGCAACTGGGTTC ACCAGTACCCACACTTGAGAGATGCACAAGAAGACATAATGCTAATGACTGTCTACCTGCAATACGTTCTAAAATGTGTT CATTGTCTATTAATCTCTCTTCTTTGCATTTGTTGAAGTTTTCTTCATCAATCATTTTAGTAATATAAGTGCAATTTTCC AAGTATTTACTTTTAGTTCTTTAATTGGATTGGTGGTCCATAAGGAAAACTAATTTGTTGAAGGGTTGAATTGGCCTTGT CACTGAGTTTAAAACGTGAATAGAAGAGAGTGGATATGTACTAATCTGCTATGCATTGATGGATAGGTAGATTTGATTAT AACAAATATAAGTACTGATTTGCTTATATTTCTATGTGGTATATATTATGATACCCCTCTTTATAACACTTCCATATCAT TGTGAAGAGTCTAGAGGCAAGCATGTGATTTGCAATTAGATGAAATGTGAAATGTTCAAATCCTACCACTGTTGAATTGA AAAGCTTGGGCCTAGGCTTGAAGGATTTTCCCTAGGAACACTTTAGTCTCGGTATTCATGCCTCATCTTTCACCAAACCA GCGAGGCGGACCAGTCAAGTTTCCTGCAAGCTGGTCTGAAAAAGATTTGACATGATATCAAATGAATATATGGATAAGGA TGTGTATTATAGTTGGAGTATTAATGCATTGTCAGTGTAAAACAGTTGTCTGACATCCAATCATGCTATGCCATGTAGGA CCACATTATAGGAGCAGTTATCTTTCTATTTATATAAATTAAAATAACAAATTATTTACTGTTTTGGGACTTTAAATCCT TAAAGTTGTTAATTTATTTAAAATGTGATATCTAACTGTCAATTATTAACTGGTAACCTCTTTTTGGTTCAGGTCAAATA CATCCTATTCTCTTACATACATTTTACATCTTAATCACCTATTTTCTTTCCAATTAAACTGATATTATGTTTTGTGTGTG TTCCCTTGCTTTATATTCTTTAACTAATTGACATCCCATTTCTTTACAATCATGAAATTAATCATTATGTTCTGCACAGT TTATAGTTCAAACATTTTGACATGATGCGAACTTTGATTGCCTCTTGGAATCGTATGAAATATGAATGCTAAAATCACAT GAACTAGCTTGCAGTTTTTAGTTATCCTTCCTGAATTGTAGATTCTTGTGTTTTTTCAACTGCAAAGTCAAGACCTTTTT TTTTCTTTGCTAGTTCTGTAACTCCCATCTAGGTTCACACTATTGCATACCATGTACAGTGCTTATTCATCAATTGTCAT TCATGCTGCCTTTGTAGCTGGGTCCTACTTTCCTTGGTCATTTCAATTGTATGTATTTGATATTTTTCTGTGTGTTTATG GGGATTGGTTTGTGATATGTGACTATAATAAAATGTAGTAAAACTTCATAATGGAGTCAAATATATTATGCACTGCTTTT CAAATTTGGTGCTATGCTTATTTACCACTTTCACAAATGGGGATTGATGTAGTCGAGTGCTTGTTTATTTTTACCTTCAT GCTATATGTTTTTCAAATACCTAATTGCTGCTAATCTTAAAATATTCATTGTCTAATGCTAATTTTTGTTTTTTTTTGGA AGGTATTATTCCCATAACAATGATTATCTTGAAATTTGCCGTTGCTATAAGTCAATATATGAGATTCCATCTGTCAGAGA AAACCCTGCCGAGTGGATCCCAGTATGCTTTCTCTGTCTTTATTTGCACTTTCTGTTACTGCTAGGTTCTATTGTTCTAT GATATAGTGTTTTTCTAAAAATTATCTTTACTTATAGATCCTGAGGAAAATATGTTGGTACTTGGTTCTATCGCCACATG ATCCAATGCAATCAAGCCTCCTTAATTCCACCTTGGAGGATAAGAATCTATCTGAGATTCCAAACTTCAAGTATGTTAAT CCTATTTATATCTGATGTTTTCTTGGTGATGTTCAAGTATTTTGTTTGTAATTTCTTTTTTACTCGGTGTACCTGTTATA TTCTGTGCTTAGGCTACTTTTGAAACAACTGGTCACAATGGAGGTCATCCAATGGACTACTCTTTGGGATACATATAAGA GTGAGTTTGAGAACGAGAAGGTCTCTGGGAAATCTTTGGATGAAAAAGCAGCCGAAGATTTAAAGCAAAGAATAATTGAA CATGTAATTGACTGATGTCTTTATATTTCTTTGTTCTCCTGACATCAATTTGGTTGTATTGTGGGATATGCTTTTATGTT GCACACTTCTTTATGTGAGTATTTATAAGCATTATTTTTGTTTCTTTTCAGAATATTCTTGTCGTATCAAAATACTACGC CAGGATTACAGTGAAGAGACTTGCCCAGCTTTTGTGTCTTAGTGTACAGGTTTGTAAAGCTAGTTGTGATATATGCTTTT TTGAAGTGCTTGTGTGGTAACTTTTAAATGGCTCATGGGCATATCCCCTAGTATCTGTCACTGGAGACTAGTGTTTCAAA TAAAAAATCTAGTTGGGGAGTTGTAGTTGACAGCGTATGTCTATGCTGTTGTGCTGCAGCAGTTCACTTGCCTCCTCCCA TGGTTTATTTTGTGGGTTATCATTGTGGATGTTGTAACTAAATTTATTTTACTTTGCTTCTTAAAATCATCTTAGTGATA ATCCCAACTAATTCTCCATATCTCCTTACAAAATTCAGGAAGCTGAGAAGCATCTATCAGATATGGTTGTGTCGAAGGCA CTGATAGCAAAGATTGATAGGCCAAAGGGAATAGTGTGTTTCCAAACAGCGAAGGATAGCAATGATATTCTTAACTCATG GGCAGCAAACTTGGAGAAATTGCTTGATCTTGTGGAGAAAAGTTGTCATCAAATACACAAGGAAACCATGGTCCATAAAG CTGTCTTAAAGGTTTAA
CDS sequence (LotjaGi4g1v0405800.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGGCTCGCCGGTGACGTTTCCGGCACCAGGAAAGCCGCCACCGACATTCTGAAGCTCTGCTTTGATGCGCGAGCCTG GAAAACCCTAAACGACCAGATTGTCGTTTTGTCCAAACGTCGTGGTCAGCTTAAGCAGGCTGTAACAGCAATGGTCCAGC AGGCTATGCAATATATTGATGAGACACCGGACGTTGAAACTCGTGTAGAACTCATCAAAACATTGAACAGTGTATCTGCC GGGAAGATATATGTTGAGATTGAGAGGGCTAGGTTGATCAAGAAACTTGCAAAGATTAAGGAAGAACAAGGGCTTATAGC TGAAGCAGCTGATTTGATGCAAGAAATTGCGGTGGAAACTTTTGGTGCCATGGCAAAAACTGAAAAGATTGCATTCATCC TTGAACAAGTTCGTTTGTGCCTAGACCGACAGGATTATGTCCGGGCACAAATACTCTCAAAAAAGATTAGTCCAAGAGTG TTTGCTGTTGATGCATCTAAGGAAAAGAAAAAGCCTAAAGATGGCGACAATCTTGTTGAAGAGGCTCCGGCAGATATACC ATCTCTGCTAGAGTTGAAGCGGATCTATTATGAACTAATGATTCGGTATTATTCCCATAACAATGATTATCTTGAAATTT GCCGTTGCTATAAGTCAATATATGAGATTCCATCTGTCAGAGAAAACCCTGCCGAGTGGATCCCAATCCTGAGGAAAATA TGTTGGTACTTGGTTCTATCGCCACATGATCCAATGCAATCAAGCCTCCTTAATTCCACCTTGGAGGATAAGAATCTATC TGAGATTCCAAACTTCAAGCTACTTTTGAAACAACTGGTCACAATGGAGGTCATCCAATGGACTACTCTTTGGGATACAT ATAAGAGTGAGTTTGAGAACGAGAAGGTCTCTGGGAAATCTTTGGATGAAAAAGCAGCCGAAGATTTAAAGCAAAGAATA ATTGAACATAATATTCTTGTCGTATCAAAATACTACGCCAGGATTACAGTGAAGAGACTTGCCCAGCTTTTGTGTCTTAG TGTACAGGAAGCTGAGAAGCATCTATCAGATATGGTTGTGTCGAAGGCACTGATAGCAAAGATTGATAGGCCAAAGGGAA TAGTGTGTTTCCAAACAGCGAAGGATAGCAATGATATTCTTAACTCATGGGCAGCAAACTTGGAGAAATTGCTTGATCTT GTGGAGAAAAGTTGTCATCAAATACACAAGGAAACCATGGTCCATAAAGCTGTCTTAAAGGTTTAA
Protein sequence (LotjaGi4g1v0405800.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRLAGDVSGTRKAATDILKLCFDARAWKTLNDQIVVLSKRRGQLKQAVTAMVQQAMQYIDETPDVETRVELIKTLNSVSA GKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEIAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSKKISPRV FAVDASKEKKKPKDGDNLVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKSIYEIPSVRENPAEWIPILRKI CWYLVLSPHDPMQSSLLNSTLEDKNLSEIPNFKLLLKQLVTMEVIQWTTLWDTYKSEFENEKVSGKSLDEKAAEDLKQRI IEHNILVVSKYYARITVKRLAQLLCLSVQEAEKHLSDMVVSKALIAKIDRPKGIVCFQTAKDSNDILNSWAANLEKLLDL VEKSCHQIHKETMVHKAVLKV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 421 | 421 | 2.4E-236 | – | |
| PANTHER | 1 | 421 | 421 | 2.4E-236 | ||
| ProSiteProfiles | 212 | 382 | 171 | 21.056 | ||
| Pfam | 270 | 378 | 109 | 3.1E-20 | ||
| Gene3D | 306 | 386 | 81 | 3.6E-21 | ||
| SMART | 311 | 397 | 87 | 7.3E-16 | – | |
| SMART | 311 | 397 | 87 | 7.3E-16 | ||
| SUPERFAMILY | 311 | 387 | 77 | 2.58E-19 | ||
| Pfam | 384 | 416 | 33 | 1.1E-14 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0405800.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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